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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058605 ID=TCONS_00058605|Name=TCONS_00058605|organism=Clytia hemisphaerica|type=transcript|length=1181bp
TGGATTCAGCAGTTACCAGCTTGTCTTTGGCAAGAATCCCAACGTACCAA
ATGTTATGACAGACAACATTGCGGCTTTGCAAGGCACAACATCTGAAACC
CTTGCTACTCACCTAAATGCTTTACATGCATCAAGAAAAGCATTTATTGA
ATCTGAATCCAGTGAGCGTATTCGACGTGCTCTCTACAGCAAGATCCGAG
TATCTGAGCAGATCTTCAACAATGGCGATTGAGTGTTCTACATGCGTGAA
GGTTCAAAGAAATGGCTTGGCCCAGCCAAAGTGGTGTTTCAAGATAGCAA
AGTGATATTTATTCGTCACGGAGGAATAACGGTTCGTGTTTCTCCAAATC
GTCTCATAAAAGCACCAGAGGATCCAACACTTACACCAATGGAAAACAAT
GCCAAATCGCGTGGAGAAGAATTTGAGCAGCCAATACAGACACCAATCAA
TCATAAACCCTTGGTTGGAGTTTTGTCAAAACATGATGGATCCAGATCAA
AAACATTCACTGAGGGAAATGTTAGTATCAATAAAAGAACCGCCAGAGGT
GATAACGATCCACCAAAtccagacaaatcaaaaagACCAGCAACACCAAC
AACAAGACAGGGACAGTCATTATCTGTGTCTCCAACAGTTAATGATGCAA
TCTCAGTTCAATCATCATTCCAGAAAGAAGCCACATCATCTCCACAAACG
CCTATCATCTCTTCCAAAGCTTCACCTAAAGATTCTACATCCAAACGTTC
ATCGAGAAATTCATCAATAACAGCTCCATCACCAAAAGATTCAACACGNC
CTTCCACGTTGTCTATTTCAGTACAAAATTTAATGATGCAACAGTCAACG
ATCTAATACAACTAAAGAAATGTATCAGAAAACTGAAAGAGATTTCCTGT
GAAGTGATGTTTCCAACCCTTGGTCACCCAGGATCCTGGGGTATCACAGT
GTTTTCAGATGCTGTACATGCTAACCTCAATGGTGTGAACAGTACGTCTG
GTCATATTATTGTCTTTCTCACTGGAGAAAACCGACGTTGTGCATCGCTC
TCGTGGAGTTGCAACAAGATCAAACGTGTGGTACGTTCTTCCTTGGCAGC
AGAAGCATTGAGCTTACAAGAAGGACTCGAGGATGGTTTATATCACCAAT
CTATGATACAGGAGCTATTTGGCAAAAATTN Run BLAST on NCBI protein sequence of TCONS_00058605-protein >TCONS_00058605-protein ID=TCONS_00058605-protein|Name=TCONS_00058605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MREGSKKWLGPAKVVFQDSKVIFIRHGGITVRVSPNRLIKAPEDPTLTPM
ENNAKSRGEEFEQPIQTPINHKPLVGVLSKHDGSRSKTFTEGNVSINKRT
ARGDNDPPNPDKSKRPATPTTRQGQSLSVSPTVNDAISVQSSFQKEATSS
PQTPIISSKASPKDSTSKRSSRNSSITAPSPKDSTXPSTLSISVQNLMMQ
QSTI Run BLAST on NCBI transcript from alignment at scaffold_311:522144..523324 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058605 ID=TCONS_00058605|Name=TCONS_00058605|organism=Clytia hemisphaerica|type=transcript|length=1181bp|location=Sequence derived from alignment at scaffold_311:522144..523324 (Clytia hemisphaerica)
NAATTTTTGCCAAATAGCTCCTGTATCATAGATTGGTGATATAAACCATC
CTCGAGTCCTTCTTGTAAGCTCAATGCTTCTGCTGCCAAGGAAGAACGTA
CCACACGTTTGATCTTGTTGCAACTCCACGAGAGCGATGCACAACGTCGG
TTTTCTCCAGTGAGAAAGACAATAATATGACCAGACGTACTGTTCACACC
ATTGAGGTTAGCATGTACAGCATCTGAAAACACTGTGATACCCCAGGATC
CTGGGTGACCAAGGGTTGGAAACATCACTTCACAGGAAATCTCTTTCAGT
TTTCTGATACATTTCTTTAGTTGTATTAGATCGTTGACTGTTGCATCATT
AAATTTTGTACTGAAATAGACAACGTGGAAGGNCGTGTTGAATCTTTTGG
TGATGGAGCTGTTATTGATGAATTTCTCGATGAACGTTTGGATGTAGAAT
CTTTAGGTGAAGCTTTGGAAGAGATGATAGGCGTTTGTGGAGATGATGTG
GCTTCTTTCTGGAATGATGATTGAACTGAGATTGCATCATTAACTGTTGG
AGACACAGATAATGACTGTCCCTGTCTTGTTGTTGGTGTTGCTGGTcttt
ttgatttgtctggaTTTGGTGGATCGTTATCACCTCTGGCGGTTCTTTTA
TTGATACTAACATTTCCCTCAGTGAATGTTTTTGATCTGGATCCATCATG
TTTTGACAAAACTCCAACCAAGGGTTTATGATTGATTGGTGTCTGTATTG
GCTGCTCAAATTCTTCTCCACGCGATTTGGCATTGTTTTCCATTGGTGTA
AGTGTTGGATCCTCTGGTGCTTTTATGAGACGATTTGGAGAAACACGAAC
CGTTATTCCTCCGTGACGAATAAATATCACTTTGCTATCTTGAAACACCA
CTTTGGCTGGGCCAAGCCATTTCTTTGAACCTTCACGCATGTAGAACACT
CAATCGCCATTGTTGAAGATCTGCTCAGATACTCGGATCTTGCTGTAGAG
AGCACGTCGAATACGCTCACTGGATTCAGATTCAATAAATGCTTTTCTTG
ATGCATGTAAAGCATTTAGGTGAGTAGCAAGGGTTTCAGATGTTGTGCCT
TGCAAAGCCGCAATGTTGTCTGTCATAACATTTGGTACGTTGGGATTCTT
GCCAAAGACAAGCTGGTAACTGCTGAATCCA Coding sequence (CDS) from alignment at scaffold_311:522144..523324 >TCONS_00058605 ID=TCONS_00058605|Name=TCONS_00058605|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_311:522144..523324 (Clytia hemisphaerica)
TTAGATCGTTGACTGTTGCATCATTAAATTTTGTACTGAAATAGACAACG
TGGAAGGNCGTGTTGAATCTTTTGGTGATGGAGCTGTTATTGATGAATTT
CTCGATGAACGTTTGGATGTAGAATCTTTAGGTGAAGCTTTGGAAGAGAT
GATAGGCGTTTGTGGAGATGATGTGGCTTCTTTCTGGAATGATGATTGAA
CTGAGATTGCATCATTAACTGTTGGAGACACAGATAATGACTGTCCCTGT
CTTGTTGTTGGTGTTGCTGGTctttttgatttgtctggaTTTGGTGGATC
GTTATCACCTCTGGCGGTTCTTTTATTGATACTAACATTTCCCTCAGTGA
ATGTTTTTGATCTGGATCCATCATGTTTTGACAAAACTCCAACCAAGGGT
TTATGATTGATTGGTGTCTGTATTGGCTGCTCAAATTCTTCTCCACGCGA
TTTGGCATTGTTTTCCATTGGTGTAAGTGTTGGATCCTCTGGTGCTTTTA
TGAGACGATTTGGAGAAACACGAACCGTTATTCCTCCGTGACGAATAAAT
ATCACTTTGCTATCTTGAAACACCACTTTGGCTGGGCCAAGCCATTTCTT
TGAACCTTCACGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058605-exon-scaffold_311-1491911889:522144..523324 | TCONS_00058605-exon-scaffold_311-1491911889:522144..523324 | Clytia hemisphaerica | exon |
| TCONS_00058605-exon-scaffold_311-1510915933:522144..523324 | TCONS_00058605-exon-scaffold_311-1510915933:522144..523324 | Clytia hemisphaerica | exon |
| TCONS_00058605-exon-scaffold_311-1575043694:522144..523324 | TCONS_00058605-exon-scaffold_311-1575043694:522144..523324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:522144..523324 . |
Blast
The following BLAST results are available for this feature:
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