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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058599 ID=TCONS_00058599|Name=TCONS_00058599|organism=Clytia hemisphaerica|type=transcript|length=1414bp
AAAAAATAAGACAAAGGaaatggataaaaataaaaacgaaaataaaaccg
aaaacaaaaacgaaaacaaaaatgataatgaaaatgaaaataataatgaa
aatgtAACTGGTTCTGATGAGACGAATTCAATTGGAAGTGCAAGTGGCAA
AGATGAAGAAGTTTGCAGTGAATGTGGGAAAAGTTTCATTGGCTTTGGAC
ACAATTCAGCAAATGTCGCCCGACATGTCCAAgcttgtttgaagaaaaaa
gggaGAGTTATCAGCCCTAAAAAACCTGGCAAAAAGAGACCTGCTCAGTC
TTcaatattgaaatttttatccaaaaagacaaaaacaacagaaaaagaaT
CAGATGTAGAGTCAGACCATGAAAGTGAAGGTATCAGCAAACAGAATGAT
CAAAGCCAGGTTGACTTCAATCGAGAACAACATGAGCAAGAAATAATTGA
TAGTACAGTCGGTGAAAATGCTCTATTTGATGATAATGAACTTGTATGTA
AGGTTTCATCTGTCAATGTCAGTGTTTCAACAGAAAAGCTAGTACACTGC
GATGGTTATATACCAGCCCTAATAGGGgatgtttttgaaaactttccgCT
CCATCTTCTGAACGATTCtgatattgtttttgaaaatggcAGATTTCATG
GGAAATTGTGTGCCGAAAACAATTACTTACTTTTCGACTCAGAGTCAGAT
GAAAGCAAAAAGAATCCCTGCTGTTTAGAAATTCAGAGCaatgaaaaatt
ccaaaaaatcgtcACTGATTCAAATGACACTAAGAGACACTTATCAACAG
TAAAcaacaaattcaaaacaattttgggaACATGGTTTgacaaaaagtaa
atatcacaCTCTCGTTTgataggttttaaggggtggTCCTTAGTGAATTT
CCTTTGAAATCACTTAGTATATTTCATACTAACTgtcaaagggtggtggt
gtggcctctttcctccaaagaatcacttagtaggcatgatgtcttgtact
aactgcttgacccccccctgtttaAAAGAAAGCTCTTATAAATATCCTCA
GAAAAAAATGAGGGTTCACTTGTCTCTCAACCTTTAGTAGTTTTtcagat
attccattttgaagctCCATTTTTTGAAGATCTCGGTACAAAAATCTCTC
GCTATCTTGTAACATCTCCACACGGCactaaaatcgaaagtgttAGACAA
AAAAATCCGTGCTGGAAGTTTGGAGCAAGAGTGTTTTTCCATAGCGCTGA
GCTGTAACGGGGGTCACTATATACCCATTAACTTTCTGTTCAGACACTGT
CAAGTTAAATGTATAAAAAGTGCACCACCCTTAAAATGGGCCCAAAACAG
TTTTTTGGgtatacctttttttctggaaatcagggcaaactgaaaatttt
ataTGGCATGGGAA Run BLAST on NCBI protein sequence of TCONS_00058599-protein >TCONS_00058599-protein ID=TCONS_00058599-protein|Name=TCONS_00058599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
KNKTKEMDKNKNENKTENKNENKNDNENENNNENVTGSDETNSIGSASGK
DEEVCSECGKSFIGFGHNSANVARHVQACLKKKGRVISPKKPGKKRPAQS
SILKFLSKKTKTTEKESDVESDHESEGISKQNDQSQVDFNREQHEQEIID
STVGENALFDDNELVCKVSSVNVSVSTEKLVHCDGYIPALIGDVFENFPL
HLLNDSDIVFENGRFHGKLCAENNYLLFDSESDESKKNPCCLEIQSNEKF
QKIVTDSNDTKRHLSTVNNKFKTILGTWFDKK Run BLAST on NCBI transcript from alignment at scaffold_311:358622..360035 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058599 ID=TCONS_00058599|Name=TCONS_00058599|organism=Clytia hemisphaerica|type=transcript|length=1414bp|location=Sequence derived from alignment at scaffold_311:358622..360035 (Clytia hemisphaerica)
TTCCCATGCCAtataaaattttcagtttgccctgatttccagaaaaaaag
gtatacCCAAAAAACTGTTTTGGGCCCATTTTAAGGGTGGTGCACTTTTT
ATACATTTAACTTGACAGTGTCTGAACAGAAAGTTAATGGGTATATAGTG
ACCCCCGTTACAGCTCAGCGCTATGGAAAAACACTCTTGCTCCAAACTTC
CAGCACGGATTTTTTTGTCTaacactttcgattttagtGCCGTGTGGAGA
TGTTACAAGATAGCGAGAGATTTTTGTACCGAGATCTTCAAAAAATGGag
cttcaaaatggaatatctgaAAAACTACTAAAGGTTGAGAGACAAGTGAA
CCCTCATTTTTTTCTGAGGATATTTATAAGAGCTTTCTTTtaaacagggg
ggggtcaagcagttagtacaagacatcatgcctactaagtgattctttgg
aggaaagaggccacaccaccaccctttgacAGTTAGTATGAAATATACTA
AGTGATTTCAAAGGAAATTCACTAAGGAccaccccttaaaacctatcAAA
CGAGAGtgtgatatttactttttgtcAAACCATGTtcccaaaattgtttt
gaatttgttgTTTACTGTTGATAAGTGTCTCTTAGTGTCATTTGAATCAG
TgacgattttttggaatttttcattGCTCTGAATTTCTAAACAGCAGGGA
TTCTTTTTGCTTTCATCTGACTCTGAGTCGAAAAGTAAGTAATTGTTTTC
GGCACACAATTTCCCATGAAATCTgccattttcaaaaacaatatcaGAAT
CGTTCAGAAGATGGAGcggaaagttttcaaaaacatcCCCTATTAGGGCT
GGTATATAACCATCGCAGTGTACTAGCTTTTCTGTTGAAACACTGACATT
GACAGATGAAACCTTACATACAAGTTCATTATCATCAAATAGAGCATTTT
CACCGACTGTACTATCAATTATTTCTTGCTCATGTTGTTCTCGATTGAAG
TCAACCTGGCTTTGATCATTCTGTTTGCTGATACCTTCACTTTCATGGTC
TGACTCTACATCTGAttctttttctgttgtttttgtctttttggataaaa
atttcaatattgAAGACTGAGCAGGTCTCTTTTTGCCAGGTTTTTTAGGG
CTGATAACTCtcccttttttcttcaaacaagcTTGGACATGTCGGGCGAC
ATTTGCTGAATTGTGTCCAAAGCCAATGAAACTTTTCCCACATTCACTGC
AAACTTCTTCATCTTTGCCACTTGCACTTCCAATTGAATTCGTCTCATCA
GAACCAGTTacattttcattattattttcattttcattatcatttttgtt
ttcgtttttgttttcggttttattttcgtttttatttttatccatttCCT
TTGTCTTATTTTTT Coding sequence (CDS) from alignment at scaffold_311:358622..360035 >TCONS_00058599 ID=TCONS_00058599|Name=TCONS_00058599|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at scaffold_311:358622..360035 (Clytia hemisphaerica)
ttactttttgtcAAACCATGTtcccaaaattgttttgaatttgttgTTTA
CTGTTGATAAGTGTCTCTTAGTGTCATTTGAATCAGTgacgattttttgg
aatttttcattGCTCTGAATTTCTAAACAGCAGGGATTCTTTTTGCTTTC
ATCTGACTCTGAGTCGAAAAGTAAGTAATTGTTTTCGGCACACAATTTCC
CATGAAATCTgccattttcaaaaacaatatcaGAATCGTTCAGAAGATGG
AGcggaaagttttcaaaaacatcCCCTATTAGGGCTGGTATATAACCATC
GCAGTGTACTAGCTTTTCTGTTGAAACACTGACATTGACAGATGAAACCT
TACATACAAGTTCATTATCATCAAATAGAGCATTTTCACCGACTGTACTA
TCAATTATTTCTTGCTCATGTTGTTCTCGATTGAAGTCAACCTGGCTTTG
ATCATTCTGTTTGCTGATACCTTCACTTTCATGGTCTGACTCTACATCTG
AttctttttctgttgtttttgtctttttggataaaaatttcaatattgAA
GACTGAGCAGGTCTCTTTTTGCCAGGTTTTTTAGGGCTGATAACTCtccc
ttttttcttcaaacaagcTTGGACATGTCGGGCGACATTTGCTGAATTGT
GTCCAAAGCCAATGAAACTTTTCCCACATTCACTGCAAACTTCTTCATCT
TTGCCACTTGCACTTCCAATTGAATTCGTCTCATCAGAACCAGTTacatt
ttcattattattttcattttcattatcatttttgttttcgtttttgtttt
cggttttattttcgtttttatttttatccatttCCTTTGTCTTATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058599-exon-scaffold_311-1491911889:358622..360035 | TCONS_00058599-exon-scaffold_311-1491911889:358622..360035 | Clytia hemisphaerica | exon |
| TCONS_00058599-exon-scaffold_311-1510915933:358622..360035 | TCONS_00058599-exon-scaffold_311-1510915933:358622..360035 | Clytia hemisphaerica | exon |
| TCONS_00058599-exon-scaffold_311-1575043694:358622..360035 | TCONS_00058599-exon-scaffold_311-1575043694:358622..360035 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:358622..360035 . |
Blast
The following BLAST results are available for this feature:
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