TCONS_00058580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058580
Unique NameTCONS_00058580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1087

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058580 ID=TCONS_00058580|Name=TCONS_00058580|organism=Clytia hemisphaerica|type=transcript|length=1087bp
ATTTATTTTTCCCTTCCACTGATTTCTCAAAACCTCGAACCACTTATCCG
TAATTAAAATATCTCATTAAAATTCAAACACGTTGTTTGATAAgttgcca
attttttttgggacagcaaaatatattttttcccaaACATCGTGAACCAA
CTAAATACTGAACAACATTTTcatcaaagaaagaaatcatCATGAAAGAA
TGCATCCTAGCGCTGCTGCTGCTAGCGCGAATCTGTACATCTTGTGCACA
AGATGTAATCGAACCGGGTAGTATCGATCCTACACCAAACATACCACCTG
CTGATGACCATGGTGCTTCTCAACTAATGTCACAACCAATGCAATCATTT
CATCAATCTATTTCACCGTCAGCCTCACAAAGTGCAATGCCAATGTCACA
ACCAATGCAATCATTTCATCAATCTTTTTCACCGTCAGCCTCACAAAGTG
TAATGCCAATGTCACAACCAATGCAATCATTTCGTCAATCTATTTCACCG
TCAGCTTCACAAAGTGTAATGCCAATGTCATCTGCCATTACTACGGCTCC
TCCTACCAGAAAAGTTCTGTTCCAATGTAATTTCGAAAGAGATGCATGTT
CACCTGCAAGCACTGGTGATCATTGGGAACGGAGAAATGGCTCAACACCA
AGTTATGATACCGGACCTTCCGTAGATGCTACCAcagGAACAAGTGCCGG
TCATTACATCCATTACGAATCGTCCAATCCCCCGTCAGACAATATCGATC
TGTTAGAATACATACTACCGCCGACACGCTCACACATTTATTGTATCTCT
TTCGCTTATCATATGTACGGGAGTGATATCGGTACCTTAAGAGTTGGTGT
ACAGAACCCGCTCCCGAACTTTTTTTGGCAGATGAGTGGTAACAAAGGGG
ATCGTTGGCATCGTGTACAAATCAGTCACCTTTCGGTTACGTCACCATTT
TTTCCTTTCTTCCAACCAGCCAGACTTATTTTTGAAGCACGTCGTCCTCG
AGGATGGGAAAGTGACTTTGCAATTGATGACATTGTCGTAACTGAAAGAT
GTGATGATAGTAATACAACGACGACAACCACTTCCNN
Run BLAST on NCBI

protein sequence of TCONS_00058580-protein

>TCONS_00058580-protein ID=TCONS_00058580-protein|Name=TCONS_00058580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MKECILALLLLARICTSCAQDVIEPGSIDPTPNIPPADDHGASQLMSQPM
QSFHQSISPSASQSAMPMSQPMQSFHQSFSPSASQSVMPMSQPMQSFRQS
ISPSASQSVMPMSSAITTAPPTRKVLFQCNFERDACSPASTGDHWERRNG
STPSYDTGPSVDATTGTSAGHYIHYESSNPPSDNIDLLEYILPPTRSHIY
CISFAYHMYGSDIGTLRVGVQNPLPNFFWQMSGNKGDRWHRVQISHLSVT
SPFFPFFQPARLIFEARRPRGWESDFAIDDIVVTERCDDSNTTTTTTS
Run BLAST on NCBI

transcript from alignment at scaffold_311:1362893..1369735-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058580 ID=TCONS_00058580|Name=TCONS_00058580|organism=Clytia hemisphaerica|type=transcript|length=6843bp|location=Sequence derived from alignment at scaffold_311:1362893..1369735- (Clytia hemisphaerica)
ATTTATTTTTCCCTTCCACTGATTTCTCAAAACCTCGAACCACTTATCCG
TAATTAAAATATCTCATTAAAATTCAAACACGTTGTTTGATAAGTTGCCA
ATTTTTTTTGGGACAGCAAAATATATTTTTTCCCAAGTAAGTAATTTCTT
TTTTCCTATTTTTCTTCGAATCTCAATAATTATCTTGTTGATATAGCATT
TTCCACTTAATGTGCACATTTTTTGGATAATTGCATTTCTCCATTTCATT
AATTGTTTTTGTTTATTCCCTATTGTGTTTGATAAATCAGGGACTAAATG
TAATTTTGACTATAAAAGGGCGTCCAATTTTCAACTCAATTCATTTCAGA
ATTCTATATTACAGACATCGTGAACCAACTAAATACTGAACAACATTTTC
ATCAAAGAAAGAAATCATCATGAAAGAATGCATCCTAGCGCTGCTGCTGC
TAGCGCGAATCTGTACATCTTGTAAGTGAATATTAGAAATTCCTTAGCGT
CGTGAGTCCATGTGTCGATAGATAACAGTATAATTTTCTTAAAAGCAGCC
GACTCACAGATTTCAAAAATCAAATAAAATTGAAATCTGTGAGTGGGCTA
ATATTCTGTTCCTTTTTTTGACCAATCTTGCTCCACATCCGTGTCAATCC
AATGTGACAAAGCTTGTGAATTAAAAGTGATGAGTAAGCAAACGATATTA
CACTTACTTAAAGACAAAACCTTTAATATTTTAACTTTCCTTCGCCTTAT
TCAGGTGCACAAGATGTAATCGAACCGGGTAGTATCGATCCTACACCAAA
CATACCACCTGCTGATGACCATGGTGCTTCTCAACTAATGTCACAACCAA
TGCAATCATTTCATCAATCTATTTCACCGTCAGCCTCACAAAGTGCAATG
CCAATGTCACAACCAATGCAATCATTTCATCAATCTTTTTCACCGTCAGC
CTCACAAAGTGTAATGCCAATGTCACAACCAATGCAATCATTTCGTCAAT
CTATTTCACCGTCAGCTTCACAAAGTGTAATGCCAATGTCATCTGCCATT
ACTACGGCTCCTCCTACCAGAAAAGGTAACCCTTATCNTGATTTCCCGAT
GATGTAGCGCCATTTGACGTGAAATTTTTAACACATCAATGGCCTTGCAG
GTACAACTAAAAAAAAATCTCCGATTAAAGATGGCGAGTGTAACTTTTTC
CAGAGTTTGTAAAGGTGGTCCGATAGCTTTGAACTTTTTTTACTCCATGT
GGTGTAGGAAAAGATCTACAGAATTAATCTTTCGAATCAAGTATAATGTT
TTATGTGTTAATGTTATAAGGACCGTAAATTTTGGCTGAAGATCGACTGT
TCTTGAATTGTTCTTATTATTGTTATTTTCATTAAGTTAGCTTTTTTTCA
GTGTCATATTCTGGTATTCTGCAATAAAAAAACANGAGGTGACTAAAATT
AAGGGCCGACTAAGTTTTGGCCGATAAGGTACTTTAATAGGATGAATTTA
TGCGAAGCTTAAATATCGATGTTGAGCATATCCGCGAAATTTTAAAAATT
CGTGGGCATAATTTCGCGGATGGTACTATAGGGAGACAATGTTTTCCGAA
TTTTGTACCCTTTAACGCCAAATTATGCATGTTGCTTGTCGAAATACGCA
TTATTAGCGCTTCTTTGATACCAGTAAACATTATAAAAGTATAGTTGATT
TCCCGTTAGTTCTATTTTGAATCCTTGAATACATTTGATGATGTAGCGCC
ATTTGACGTGAAATTTTTAACACATCAATGGCCTTGCAGGTACACCAAAA
AAAAAAAACTCCGATTAAAGATGGCGAGTGTAACTTTTTCCAGAGTTTGT
AAAGGTGGTCCGATAGCTTTGAACTTTTTTTACTCCATGTGGTGTAGGAA
AAGATCTACAGAATTAATCTTTCGAATCAAGTATAATGTTTTATGTGTTA
ATGTTATAAGGACCGTAAATTTTGGCTGAAGATCGACTGTTCTTGAATTG
TTCTTATTATTGTTATTTTCATTAAGTTAGCTTTTTTTCAGTGTCATATT
CTGGTATTCTGCAATAAAAAAACATTACATATACTTTATACATTTTTTAG
TTCTGTTCCAATGTAATTTCGAAAGAGATGCATGTTCACCTGCAAGCACT
GGTGATCATTGGGAACGGAGAAATGGCTCAACACCAAGTTATGATACCGG
ACCTTCCGTAGATGCTACCACAGGTATGTCAAAAATTATTTTCGTTGTCA
GTCAACCAGACTTTGGTAATCAATACTATTAATCGGATAAACTTTCGCGA
GATTAAATTTCGCGATTTTGCGAATTTTTGCCATTCACGCCAAATTAAAA
CTCGCAAAAACGCGTGAGATTTCTGTCTCGCGAAATTAAATCTACCACAA
AATTTTTAAGATTGTATTTTCAGTGGAGAAACCAGTCCAAAGTCTCAATT
TGTAGTAAAAATTGCTATTTTTCAGCCGTTTTCAGGCTTATTCGCGAAAT
TAAATCCACGCGAAATTCTTCAAAACTCTGACTCTAAATCTGACGAAATT
AAATGCAGAAAATAGTTCCATTTATATTGGGACGGGAAAATCGTTTGAGA
CGAGTAGTTTGTAATTAATCGTCTCAGTATAAACAGTGCCGTAGCAACTG
GGGGTGGCAATAATGATGAAGTATCTCACTAATATCGATCATTTGAAAGA
AATTTTTTTTCGAAATTCTGATTTCGTCAGCAAAAAATAGGATTTTTCCT
TTTTTCTAAATTTCTGCTGACGTCATGAAAATTTAAAAAAAACTAATTTT
TCAACAGATCGACTTTAGTAAGATACATCTTTGGTGAAAGTTTGAAGACA
ATTTGATAAACCATTCTGGAGAAATTCAATTTTTAGTTTTGTTACACATC
AGGTTAGAAACTACATCATAGTACCCTTGATGTTCAGTCATTTATTTGGT
CGTTTTCTGTCGGCTAGTGCGATCTAAACATTATGGTAATTTTAAGACAT
GCCATAACTTACCCGAGCCCTCAATAAGAAAATGCTTTATACGGCACTGA
AAGGTATTATATATGAATCTTAAATGAACAATATTGCATAAGTACGGTCA
TTCTTTTCACTTCCTACATTCCGACTTCAGCATGGAGTCTTTAAGAGTAA
TCCTCTTAAAAATAATAAAAGCTGATCGATGCTCTATGCCAAGCTCAACC
TTAATTGTCAACATCCACAATAGGTTCAGTTTAGGACGAAATTAAGACTA
ATCTAAATACAGGCAAGACATTTCATTCTGTGAAGGTAATGCAACTGCAC
ACAAAAGGCATGGTTTGCCCTCGCAGTGTCACTAAACTTCAGAAAATGTT
GTGTTTATTTACAAAAACTGCCTAATCCTCGGAGGCTTATTACCCGAAAT
CCGGGTCTCTTTCCGCTTGAAAAGTGGCAAAGGAATCTTAGTGCGGAAAA
TGAGAATCTTTACAAATTTCTTTATCATATAGGAACAAGTGCCGGTCATT
ACATCCATTACGAATCGTCCAATCCCCCGTCAGACAATATCGATCTGTTA
GAATACATACTACCGCCGACACGCTCACACATTTATTGTATCTCTTTCGC
TTATCATATGTACGGGAGTGATATCGGTACCTTAAGAGTTGGTGTACAGA
ACCCGCTCCCGAACTTTTTTTGGCAGATGAGTGGTAACAAAGGGGATCGT
TGGCATCGTGTACAAATCAGTCACCTTTCGGTTACGTCACCATTTTTTCC
TTTCTTCCAACCAGCCAGAGTAAGTGCAGTTTGTTAACAGTTTTGAAAAT
CTTCAAATCTCGTAACTGCTCGTAATGGGCTTTTCCAGAAAAAAATTTTT
AACCCCACTGTTAAGGATATTGATTTTTCGAAGTATCGAACCCCCTGGAT
ATCCACTCTTAAAAATATCCTCAATCCCCTGGATATCCTCTCTTATAAAG
ATGCTTACCCCCTAGATATCGTATTTTTCACTTGAAAAGACACTTTACCC
CTGAATATCTGCTCCCTTGTAGATATTTAACCCCCTGGATATCCGATATC
CTCAACGGACTATTTCTGGAAAAGCCCATTCTGGGTAGCGTATTGAATTT
ATGATCTTTTTAGGATGGGGGCTTATTCGAGGGAGCTTTTAAAAGAGGTC
TAGCGCACATAGAAAAGGGGATAGACTTTTTGACTCTGGGCACCTCCAAC
AGTAGCCAAACAAATGTACTTACTTTGAAAGATGGGTTTTTATTTAATGC
TTCTAAACCAAGTTCATTTTTAAAAAGTTATTCGTAAAGGTAATCGTAAT
ACCTTATCAGCCCTTTTTACGCCGGCTTTTGGTGTTATTTTTGAATAAGG
GCCGGCGTAAAAGGCGTTAACTTAGGGCCGGCGTAAAAAGAGCTGATAAG
GTACGTAAAGTTTAACGTAATTCTTTGTGTACAAATGAGAAATTTTAATG
ATGTTGATGGAGTCAAAATTGGATCAAATACTAAAGTAATGCACGTCCTT
CTTGAAGGCGTTTTTTTAAGGGGCTTTTATTGGAAATCTTTTTTTTAAGG
AGGATATTATAGTATAGTTGATTCTCGCTAATTCGAACCCGAAGAGGGAA
ATTTTTTGTTCAAATTTGAATTCAAATTATAGAAAGTACATTAAGAGGAT
TTCTCCTTGACGGGGGCTGATCTTCTCTTTGTGTTGATGAAAAGTAAAGA
AAAAATTACAGGGGGAGGGTGGAGGAACCTTTTCAAGTCAAAAACATTTT
TTGGAAATTTGTGGATACCCCTGGAAAATGGCAAAATTCACAAAGAAATC
TTGGAAAATTTCTTTTCATACTTTAAATTACGGTGGGAGAGCTAAATCAG
TCTTTTACCCCCTGAAAATTTTAAAATAATTTTTTACCCCCTGGAAAAAT
GACTTATTTAGAATTATCCCTTGGAAATGTTCGTGCAGCATCCATAATAA
TTACTGTTATACATTTGGGGATCATGTAAGAGATTTCTTCTGGAAGATAC
TCATTTCGATAACACTTGGAGGTTTCTGGGGAATTCGCGTAAATAGTAAA
CTTCATACTGATACAGTCTGCTAGACATTAAAATGATAATATTTACTCTT
CATCTTTGATTCTTTCTACAGTGATTAGATTGACACATGCGCGATAAAAT
TTACATTATTGGTCTTCAAAGGTTGATATATTCTATGAAAACTCAACCTC
TGATATTCAGGGTACCTTTATGGATATAAAATTGAATGACCCGATTACTT
AACAATATTGATCTGAAATTTAAAATTTAATAAAATGAAAATTAAATCTT
TATATGTTTTTTGATTTCTACAGCTTATTTTTGAAGCACGTCGTCCTCGA
GGATGGGAAAGTGACTTTGCAATTGATGACATTGTCGTAACTGAAAGATG
TGATGATAGTAGTAAGTATTTTGTAAGGGGCGGCTACCCACTCAGCATTT
TATGGTCGTCGAACAAGGTGCGCGGCTTAATTATTGCATAAATTACATAA
ATCAAGCCTTCAATGTGCAGCATATCTCCCCTTTATTTTGGATCCGTGGA
ATGAGAAAAGCGTTCAGCGACCAAAGTGCCCTAGCTGTGTGTCTTGTTCA
CCGACCATAAAATGCTGAGTGGGTAGCGTCCTTAAGAAGAATAGTCTTAT
AAAAAGCCCTGTTCTGGAAGCTTGTTGTTTTAACTTTTTGTTATCTTTTT
CCTTTTGTTGATATCAAAAGATAGAAATCGGTTTTTGATCGTGTTACCAA
GTTCTCCTCTTGGGATTGGTTTAAGATTTAATCACATAACCGAAAAATAA
AATAACCGTAATGACGGCTGCAAACTCCGGTAATTGCCATTTTTGAATAG
CAAACCATTACAGTATGTAAACATCTTTATCGTGGTCAGCCCTTCTTAAT
ATATCTAACATAAAATTTAAAAGAGTATACAGTCTCGGACACAGAGGGAG
GCTATAACCAATGGAGGAGAGTGCACTTTATCGTATTACCTTATATGGAA
ACTAATTACTCTCCATGAATAAGATAGCCTACCTCCTGTATCCGACCCTG
GTATATCCTAGTAAGTGCGAGCACAAACGCAAACCAAATTTGGAAATCAA
ACCGGAAAGATGGGAAAATCGAACCCGACTATCGCGATTAATCGGATTTA
CGCACAATTACAAATGAATAAAACACTTATTTTAAGAAACTCCTTAACCG
GAGTTTAAAAACAATGGGAAGAAGCAAAAGACTTCCAGCCCGGGGACTGA
TAGAAGGTACTTATCATAAAATGTTAGCAAACTTTGTTGACCTAATTCAG
ACGATTTTCAAATCAAAATTCTTTGTACTATCAAGGGAAGTAAAGAACTT
CGAGTTTAAAGCCCGTAGGGCTGGAGTAGAATCTCTAACCTTTCCCCAGG
CAAGAAAAAGTGAAGCCACTTATTCCCCATCTAGAACGCGCCTAAAACCT
GCCGCAATCATGACGACGGATTGTACCTAGCGATTCCTTTGTTTTTGAGG
ACTGCTTTTTTTGAATTTACATTCAATCTGGCGTTTGTGTAAAAACCACG
CGCGGTCGTTCTGGATGGGAAATAAGTGGCTTCATTTCCCATCTAGGAGT
CTCGCGTCTATAGCCGTTCTGGTTTGGAAATCAATGGTGAAAAAAGCCTA
TAATAATGATGTCATTATTTTACCTTACAGCTAATAAATATTATCATCAT
TGGGTTGTCATCTGTTAAATGTAGAATTAGCTTTTTGGATTACCTTTCAC
GCTGTTTCGCGATATTGCTCCCGCTTATTGTATGTTCGTTTGGAATTTTA
AGATACATTTCCGTTTAGATACAACGACGACAACCACTTCCNN

Coding sequence (CDS) from alignment at scaffold_311:1362893..1369735-

>TCONS_00058580 ID=TCONS_00058580|Name=TCONS_00058580|organism=Clytia hemisphaerica|type=CDS|length=5364bp|location=Sequence derived from alignment at scaffold_311:1362893..1369735- (Clytia hemisphaerica)
ATACAACGACGACAACCACTTCCCTTATTTTTGAAGCACGTCGTCCTCGA
GGATGGGAAAGTGACTTTGCAATTGATGACATTGTCGTAACTGAAAGATG
TGATGATAGTAGAACAAGTGCCGGTCATTACATCCATTACGAATCGTCCA
ATCCCCCGTCAGACAATATCGATCTGTTAGAATACATACTACCGCCGACA
CGCTCACACATTTATTGTATCTCTTTCGCTTATCATATGTACGGGAGTGA
TATCGGTACCTTAAGAGTTGGTGTACAGAACCCGCTCCCGAACTTTTTTT
GGCAGATGAGTGGTAACAAAGGGGATCGTTGGCATCGTGTACAAATCAGT
CACCTTTCGGTTACGTCACCATTTTTTCCTTTCTTCCAACCAGCCAGATT
CTGTTCCAATGTAATTTCGAAAGAGATGCATGTTCACCTGCAAGCACTGG
TGATCATTGGGAACGGAGAAATGGCTCAACACCAAGTTATGATACCGGAC
CTTCCGTAGATGCTACCACAGGTGCACAAGATGTAATCGAACCGGGTAGT
ATCGATCCTACACCAAACATACCACCTGCTGATGACCATGGTGCTTCTCA
ACTAATGTCACAACCAATGCAATCATTTCATCAATCTATTTCACCGTCAG
CCTCACAAAGTGCAATGCCAATGTCACAACCAATGCAATCATTTCATCAA
TCTTTTTCACCGTCAGCCTCACAAAGTGTAATGCCAATGTCACAACCAAT
GCAATCATTTCGTCAATCTATTTCACCGTCAGCTTCACAAAGTGTAATGC
CAATGTCATCTGCCATTACTACGGCTCCTCCTACCAGAAAAGATGAAAGA
ATGCATCCTAGCGCTGCTGCTGCTAGCGCGAATCTGTACATCTTATACAA
CGACGACAACCACTTCCCTTATTTTTGAAGCACGTCGTCCTCGAGGATGG
GAAAGTGACTTTGCAATTGATGACATTGTCGTAACTGAAAGATGTGATGA
TAGTAGAACAAGTGCCGGTCATTACATCCATTACGAATCGTCCAATCCCC
CGTCAGACAATATCGATCTGTTAGAATACATACTACCGCCGACACGCTCA
CACATTTATTGTATCTCTTTCGCTTATCATATGTACGGGAGTGATATCGG
TACCTTAAGAGTTGGTGTACAGAACCCGCTCCCGAACTTTTTTTGGCAGA
TGAGTGGTAACAAAGGGGATCGTTGGCATCGTGTACAAATCAGTCACCTT
TCGGTTACGTCACCATTTTTTCCTTTCTTCCAACCAGCCAGATTCTGTTC
CAATGTAATTTCGAAAGAGATGCATGTTCACCTGCAAGCACTGGTGATCA
TTGGGAACGGAGAAATGGCTCAACACCAAGTTATGATACCGGACCTTCCG
TAGATGCTACCACAGGTGCACAAGATGTAATCGAACCGGGTAGTATCGAT
CCTACACCAAACATACCACCTGCTGATGACCATGGTGCTTCTCAACTAAT
GTCACAACCAATGCAATCATTTCATCAATCTATTTCACCGTCAGCCTCAC
AAAGTGCAATGCCAATGTCACAACCAATGCAATCATTTCATCAATCTTTT
TCACCGTCAGCCTCACAAAGTGTAATGCCAATGTCACAACCAATGCAATC
ATTTCGTCAATCTATTTCACCGTCAGCTTCACAAAGTGTAATGCCAATGT
CATCTGCCATTACTACGGCTCCTCCTACCAGAAAAGATGAAAGAATGCAT
CCTAGCGCTGCTGCTGCTAGCGCGAATCTGTACATCTTATACAACGACGA
CAACCACTTCCCTTATTTTTGAAGCACGTCGTCCTCGAGGATGGGAAAGT
GACTTTGCAATTGATGACATTGTCGTAACTGAAAGATGTGATGATAGTAG
AACAAGTGCCGGTCATTACATCCATTACGAATCGTCCAATCCCCCGTCAG
ACAATATCGATCTGTTAGAATACATACTACCGCCGACACGCTCACACATT
TATTGTATCTCTTTCGCTTATCATATGTACGGGAGTGATATCGGTACCTT
AAGAGTTGGTGTACAGAACCCGCTCCCGAACTTTTTTTGGCAGATGAGTG
GTAACAAAGGGGATCGTTGGCATCGTGTACAAATCAGTCACCTTTCGGTT
ACGTCACCATTTTTTCCTTTCTTCCAACCAGCCAGATTCTGTTCCAATGT
AATTTCGAAAGAGATGCATGTTCACCTGCAAGCACTGGTGATCATTGGGA
ACGGAGAAATGGCTCAACACCAAGTTATGATACCGGACCTTCCGTAGATG
CTACCACAGGTGCACAAGATGTAATCGAACCGGGTAGTATCGATCCTACA
CCAAACATACCACCTGCTGATGACCATGGTGCTTCTCAACTAATGTCACA
ACCAATGCAATCATTTCATCAATCTATTTCACCGTCAGCCTCACAAAGTG
CAATGCCAATGTCACAACCAATGCAATCATTTCATCAATCTTTTTCACCG
TCAGCCTCACAAAGTGTAATGCCAATGTCACAACCAATGCAATCATTTCG
TCAATCTATTTCACCGTCAGCTTCACAAAGTGTAATGCCAATGTCATCTG
CCATTACTACGGCTCCTCCTACCAGAAAAGATGAAAGAATGCATCCTAGC
GCTGCTGCTGCTAGCGCGAATCTGTACATCTTATACAACGACGACAACCA
CTTCCCTTATTTTTGAAGCACGTCGTCCTCGAGGATGGGAAAGTGACTTT
GCAATTGATGACATTGTCGTAACTGAAAGATGTGATGATAGTAGAACAAG
TGCCGGTCATTACATCCATTACGAATCGTCCAATCCCCCGTCAGACAATA
TCGATCTGTTAGAATACATACTACCGCCGACACGCTCACACATTTATTGT
ATCTCTTTCGCTTATCATATGTACGGGAGTGATATCGGTACCTTAAGAGT
TGGTGTACAGAACCCGCTCCCGAACTTTTTTTGGCAGATGAGTGGTAACA
AAGGGGATCGTTGGCATCGTGTACAAATCAGTCACCTTTCGGTTACGTCA
CCATTTTTTCCTTTCTTCCAACCAGCCAGATTCTGTTCCAATGTAATTTC
GAAAGAGATGCATGTTCACCTGCAAGCACTGGTGATCATTGGGAACGGAG
AAATGGCTCAACACCAAGTTATGATACCGGACCTTCCGTAGATGCTACCA
CAGGTGCACAAGATGTAATCGAACCGGGTAGTATCGATCCTACACCAAAC
ATACCACCTGCTGATGACCATGGTGCTTCTCAACTAATGTCACAACCAAT
GCAATCATTTCATCAATCTATTTCACCGTCAGCCTCACAAAGTGCAATGC
CAATGTCACAACCAATGCAATCATTTCATCAATCTTTTTCACCGTCAGCC
TCACAAAGTGTAATGCCAATGTCACAACCAATGCAATCATTTCGTCAATC
TATTTCACCGTCAGCTTCACAAAGTGTAATGCCAATGTCATCTGCCATTA
CTACGGCTCCTCCTACCAGAAAAGATGAAAGAATGCATCCTAGCGCTGCT
GCTGCTAGCGCGAATCTGTACATCTTATACAACGACGACAACCACTTCCC
TTATTTTTGAAGCACGTCGTCCTCGAGGATGGGAAAGTGACTTTGCAATT
GATGACATTGTCGTAACTGAAAGATGTGATGATAGTAGAACAAGTGCCGG
TCATTACATCCATTACGAATCGTCCAATCCCCCGTCAGACAATATCGATC
TGTTAGAATACATACTACCGCCGACACGCTCACACATTTATTGTATCTCT
TTCGCTTATCATATGTACGGGAGTGATATCGGTACCTTAAGAGTTGGTGT
ACAGAACCCGCTCCCGAACTTTTTTTGGCAGATGAGTGGTAACAAAGGGG
ATCGTTGGCATCGTGTACAAATCAGTCACCTTTCGGTTACGTCACCATTT
TTTCCTTTCTTCCAACCAGCCAGATTCTGTTCCAATGTAATTTCGAAAGA
GATGCATGTTCACCTGCAAGCACTGGTGATCATTGGGAACGGAGAAATGG
CTCAACACCAAGTTATGATACCGGACCTTCCGTAGATGCTACCACAGGTG
CACAAGATGTAATCGAACCGGGTAGTATCGATCCTACACCAAACATACCA
CCTGCTGATGACCATGGTGCTTCTCAACTAATGTCACAACCAATGCAATC
ATTTCATCAATCTATTTCACCGTCAGCCTCACAAAGTGCAATGCCAATGT
CACAACCAATGCAATCATTTCATCAATCTTTTTCACCGTCAGCCTCACAA
AGTGTAATGCCAATGTCACAACCAATGCAATCATTTCGTCAATCTATTTC
ACCGTCAGCTTCACAAAGTGTAATGCCAATGTCATCTGCCATTACTACGG
CTCCTCCTACCAGAAAAGATGAAAGAATGCATCCTAGCGCTGCTGCTGCT
AGCGCGAATCTGTACATCTTATACAACGACGACAACCACTTCCCTTATTT
TTGAAGCACGTCGTCCTCGAGGATGGGAAAGTGACTTTGCAATTGATGAC
ATTGTCGTAACTGAAAGATGTGATGATAGTAGAACAAGTGCCGGTCATTA
CATCCATTACGAATCGTCCAATCCCCCGTCAGACAATATCGATCTGTTAG
AATACATACTACCGCCGACACGCTCACACATTTATTGTATCTCTTTCGCT
TATCATATGTACGGGAGTGATATCGGTACCTTAAGAGTTGGTGTACAGAA
CCCGCTCCCGAACTTTTTTTGGCAGATGAGTGGTAACAAAGGGGATCGTT
GGCATCGTGTACAAATCAGTCACCTTTCGGTTACGTCACCATTTTTTCCT
TTCTTCCAACCAGCCAGATTCTGTTCCAATGTAATTTCGAAAGAGATGCA
TGTTCACCTGCAAGCACTGGTGATCATTGGGAACGGAGAAATGGCTCAAC
ACCAAGTTATGATACCGGACCTTCCGTAGATGCTACCACAGGTGCACAAG
ATGTAATCGAACCGGGTAGTATCGATCCTACACCAAACATACCACCTGCT
GATGACCATGGTGCTTCTCAACTAATGTCACAACCAATGCAATCATTTCA
TCAATCTATTTCACCGTCAGCCTCACAAAGTGCAATGCCAATGTCACAAC
CAATGCAATCATTTCATCAATCTTTTTCACCGTCAGCCTCACAAAGTGTA
ATGCCAATGTCACAACCAATGCAATCATTTCGTCAATCTATTTCACCGTC
AGCTTCACAAAGTGTAATGCCAATGTCATCTGCCATTACTACGGCTCCTC
CTACCAGAAAAGATGAAAGAATGCATCCTAGCGCTGCTGCTGCTAGCGCG
AATCTGTACATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036894XLOC_036894Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058580-proteinTCONS_00058580-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058580-exon-scaffold_311-1575043694:1369600..1369735TCONS_00058580-exon-scaffold_311-1575043694:1369600..1369735Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1575043694:1369265..1369371TCONS_00058580-exon-scaffold_311-1575043694:1369265..1369371Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1575043694:1368661..1368981TCONS_00058580-exon-scaffold_311-1575043694:1368661..1368981Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1575043694:1367513..1367635TCONS_00058580-exon-scaffold_311-1575043694:1367513..1367635Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1575043694:1365967..1366253TCONS_00058580-exon-scaffold_311-1575043694:1365967..1366253Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1575043694:1364325..1364412TCONS_00058580-exon-scaffold_311-1575043694:1364325..1364412Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1575043694:1362893..1362917TCONS_00058580-exon-scaffold_311-1575043694:1362893..1362917Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1510915933:1369600..1369735TCONS_00058580-exon-scaffold_311-1510915933:1369600..1369735Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1510915933:1369265..1369371TCONS_00058580-exon-scaffold_311-1510915933:1369265..1369371Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1510915933:1368661..1368981TCONS_00058580-exon-scaffold_311-1510915933:1368661..1368981Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1510915933:1367513..1367635TCONS_00058580-exon-scaffold_311-1510915933:1367513..1367635Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1510915933:1365967..1366253TCONS_00058580-exon-scaffold_311-1510915933:1365967..1366253Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1510915933:1364325..1364412TCONS_00058580-exon-scaffold_311-1510915933:1364325..1364412Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1510915933:1362893..1362917TCONS_00058580-exon-scaffold_311-1510915933:1362893..1362917Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1491911889:1369600..1369735TCONS_00058580-exon-scaffold_311-1491911889:1369600..1369735Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1491911889:1369265..1369371TCONS_00058580-exon-scaffold_311-1491911889:1369265..1369371Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1491911889:1368661..1368981TCONS_00058580-exon-scaffold_311-1491911889:1368661..1368981Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1491911889:1367513..1367635TCONS_00058580-exon-scaffold_311-1491911889:1367513..1367635Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1491911889:1365967..1366253TCONS_00058580-exon-scaffold_311-1491911889:1365967..1366253Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1491911889:1364325..1364412TCONS_00058580-exon-scaffold_311-1491911889:1364325..1364412Clytia hemisphaericaexon
TCONS_00058580-exon-scaffold_311-1491911889:1362893..1362917TCONS_00058580-exon-scaffold_311-1491911889:1362893..1362917Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1362893..1369735 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.363667	0.412886	0.32026	0.134282	0.513886	0.2153	0.598788	0.61154	0.476708	3.54288	3.93006	0.322934	119.001	95.4222	22.6478	71.678	39.1589	40.9185	1.46044	4.38016	0.195341	0.34301	0.231652	0.42121	2.09112	2.43427	0.110813	0.0591315	0.224246	0.456942
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000998MAM_dom
IPR013320ConA-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
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BLAST of TCONS_00058580 vs. Swiss-Prot (Human)
Match: MALR1 (MAM and LDL-receptor class A domain-containing protein 1 OS=Homo sapiens GN=MALRD1 PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 3.095e-21
Identity = 60/163 (36.81%), Postives = 84/163 (51.53%), Query Frame = 3 
Query:  570 FQCNFERDACS---PASTGDHWERRNGSTPSYDTGPSVDATTGTSAGHYIHYESSNPPS--DNIDLLEYILPPTRSHIYCISFAYHMYGSDIGTLRVGVQ---NPLPNFFWQMSGNKGDRWHRVQISHLSVTSPFFPFFQPARLIFEARRPRGWESDFAIDDI 1034
             QCNFE   C+    A     W R  G TP+ +TGP  D T GT+ GHY++ ESS P +  D+  LL  IL  T +      F YHM+G  I  L +  +   +      WQ+ GN+G+RW R    HL+++S      QP +++ EA    G+  D AIDD+
Sbjct:  863 LQCNFETGICNWEQDAKDDFDWTRSQGPTPTLNTGPMKDNTLGTAKGHYLYIESSEPQAFQDSAALLSPILNATDTKGCTFRFYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIR---KHLNISSR-----QPFQILVEASVGDGFTGDIAIDDL 1017
The following BLAST results are available for this feature:
BLAST of TCONS_00058580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MALR13.095e-2136.81MAM and LDL-receptor class A domain-containing pro... [more]
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