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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058564 ID=TCONS_00058564|Name=TCONS_00058564|organism=Clytia hemisphaerica|type=transcript|length=2052bpRun BLAST on NCBI protein sequence of TCONS_00058564-protein >TCONS_00058564-protein ID=TCONS_00058564-protein|Name=TCONS_00058564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=550bp MIPPQEKLQGLLYNWTDDLPQCKETGVGYQTNLIYRAGGGMGATTDYEDRRun BLAST on NCBI transcript from alignment at scaffold_311:1041939..1054175- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058564 ID=TCONS_00058564|Name=TCONS_00058564|organism=Clytia hemisphaerica|type=transcript|length=12237bp|location=Sequence derived from alignment at scaffold_311:1041939..1054175- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_311:1041939..1054175- >TCONS_00058564 ID=TCONS_00058564|Name=TCONS_00058564|organism=Clytia hemisphaerica|type=CDS|length=16530bp|location=Sequence derived from alignment at scaffold_311:1041939..1054175- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058564 vs. Swiss-Prot (Human)
Match: TAB1 (TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 OS=Homo sapiens GN=TAB1 PE=1 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 9.738e-86 Identity = 156/383 (40.73%), Postives = 226/383 (59.01%), Query Frame = 3
Query: 180 NWTDDLPQCKETGVGYQTNLIYRAGGGMGATTDYEDRSFHFSCPGECFLYGVLDGNDGPMVADFAGQRLPAELLLGQIKEEYGDREVKQRLREAFDSVSKGFVEDLIDEPLMEKMNLETQLPEGMSKNDAQKRFPALFQRLEQLEKRIKGGCSAAIALIHKSRLFVANVGDARALLCRVDPQNEELGVIQLSTDHTIATNSELQRLANLGLNIERLQQIPIVL--KTTRSLGDWALKGGYTSHPDLKEAREEPILSTPSVHGGEDILKNMKFLVLMSRGVYIAYEQATGIPKDQVNAHIANLIYNEILKQTTIENVAQCVIDHICRIHKEQFTKSGNVT--CLRREDMTLLIRLFNIKVGQTPSPN-VPRRQARPNLTPLKMP 1313
+WTDDLP C +GVG +N Y A G + ED F CFLYGV +G DG V +F QRL AELLLGQ+ E+ + +V++ L +AFD V + F+E ID+ L EK +L++QLPEG+ ++ ++ + +RL+ LE+ I GG A +A++ ++L+VANVG RALLC+ + L V QL+ DHT EL RL+ LGL+ +++Q+ I+ ++TR +GD+ +K GYT L A+ +PI++ P +HG + + FLVLMS G+Y A E A G Q N IA +I E KQT+++ VAQ V+D + RIH + F G C R EDMTLL+R F +G+ P P A + P+ +P
Sbjct: 16 SWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWLKFRSENNCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLES-IDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANVGTNRALLCK--STVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHG--PGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLLVRNFGYPLGEMSQPTPSPAPAAGGRVYPVSVP 393 The following BLAST results are available for this feature:
BLAST of TCONS_00058564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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