TCONS_00058557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058557
Unique NameTCONS_00058557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058557 ID=TCONS_00058557|Name=TCONS_00058557|organism=Clytia hemisphaerica|type=transcript|length=1516bp
ATAGAGAAGaagtcaatttcatttttttttgttttttgatcacatttttt
tggtatttataAATTGTGCTTGATGCGTTGTTGGCATCATTTCATTCTTG
ACTAGTCATATGTTCACATCTTAATACTATTTGTAAACGAAGCAATCTTC
ATCAACAGTTAATTAACAGaaaccTTTGATACAGGTACACCAAAACAACA
ACCGAAATCAAAATCGATCTTCATCCAAACCGAATCGAAAGAATGGCATT
ACCAAATCATAAAAACAGATTTACTTTTATCTTGATAACAATTGCAATGA
TATATTATAGCCAGGCAGTACCCTCAACTCCGAATGAAACtgataagaat
atccaaaaagaTCCCGTAGCTAGTCCTATAATATCAACAGGAAAAGAAAC
ATGTTTTTCTGTGCCGTACAAGCAAGATATCATTGTTCCCGGTTGTGCTG
TCAAGACCATAGACAATCGTTACTGCAACGGTAATTGCGTGTCAGGATAC
GTTCCGGAGAATGGCGTAAATGGCCGGTATAAATGCTCCTCGTGTCAGCC
GTCTAAGACAACTCGAAAAATGATTGAGTTGAATTGTCGTGACGGAAGAA
CGAAGCTTGTGgaagttgaaatttttgaaagttgtaAATGTCAGCAAAGT
AGTTGTCAGGTGTCAGCACGTAAAAATATTAAAGATAGTGAGACAACTAT
GAAGTCGTcaacaaatgaaaagaaatttgatccGGTGCGGCCATGCCGTT
ATATTTGCCGTGAATGTCGGAAATCTCGTCGAGATTATGACGTTTTACAA
ACAAAAAAGGAGAAGAATGAATATTTAGTGAAATCATGTAGAACTGTGGA
ATGCAGAAAACGAATTTTGAACCACGAGGATGTAACTGAGTTAGCTAAAG
TtcaaaagaaacttaaaaaagCTGTTTGTAAGGAGTGTAAACtctgcaaa
aaacgtaaaagagAAAAAGCAAATGCATAGAggatggacttgaaatttgt
gATATTCAAACCGGGGGACTGGCACTTCCATAATGGCTGTCAAAATCTCC
TTTCTCCTAACCACCGGGGGAGATTTTCTATTGTTATTGATTTCATTACG
TATGTGCTGGTCACGTGCNCAACCACCGGAGGAGATTTTCTATTGTTATT
GATTTCATTACGTATGTGCTGGTCACGTGCAATCatagttattttataaa
attttataagatttcccaaaatatttttttgtacatattaaaaagtattt
gttatttataattttgatgagagatttgatattttatttttaaaagaaat
ttcaaaaaaaatatattcttgaAACTATatgattttaaaaagtattcaca
caaaaattcatcagCGATGTGAGCAAGAGATACAATGAATGGTAAAAAAT
GGACCGCGTCACATTTATTTAAAAACtgatgtaaatatttttcattttat
tacaaTGAACCACTGGACTTGTCGTCGATATTTATGAACAGTTTTCTTGT
GTCATATTTTTTCTCT
Run BLAST on NCBI

protein sequence of Cerberus family protein

>TCONS_00058557-protein ID=TCONS_00058557-protein|Name=Cerberus family protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MALPNHKNRFTFILITIAMIYYSQAVPSTPNETDKNIQKDPVASPIISTG
KETCFSVPYKQDIIVPGCAVKTIDNRYCNGNCVSGYVPENGVNGRYKCSS
CQPSKTTRKMIELNCRDGRTKLVEVEIFESCKCQQSSCQVSARKNIKDSE
TTMKSSTNEKKFDPVRPCRYICRECRKSRRDYDVLQTKKEKNEYLVKSCR
TVECRKRILNHEDVTELAKVQKKLKKAVCKECKLCKKRKREKANA
Run BLAST on NCBI

transcript from alignment at scaffold_311:952928..956872-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058557 ID=TCONS_00058557|Name=TCONS_00058557|organism=Clytia hemisphaerica|type=transcript|length=3945bp|location=Sequence derived from alignment at scaffold_311:952928..956872- (Clytia hemisphaerica)
ATAGAGAAGAAGTCAATTTCATTTTTTTTTGTTTTTTGATCACATTTTTT
TGGTATTTATAAATTGTGCTTGATGCGTTGTTGGCATCATTTCATTCTTG
ACTAGTCATATGTTCACATCTTAATACTATTTGTAAACGAAGCAATCTTC
ATCAACAGTTAATTAACAGGTAAGCAAAAGGTACTTTTAGTTTATAAGAT
TAATTCATTTTATTTGGGATACATAATGATTAATACTTTTCAAAAAGCTA
TAGCTTGGTGCAGCCTAGGATGCTCAGTCCCAGTGGAACAACGGTGTAAA
AGTGAAGAGGCTGAAGGCTCAAATGAGATAAAATTCGCTAGGAATTTAAG
AAAAAATTATCATTTGTTCAAAAGCGAGGAGGTTGACGTCTCCCCAGTCT
TCCCGCTTCCGCTGGGCCTGATGCTGCCCTCCCTCCACTGACGGACTCGT
GATCCTTATGTTCTAGGTCTGCGATTCAAACTAAGTGTAACTGCATCGCA
ACGAGCCAGTTACCACCCGTAGCGTATAGATTATAAGGGAAGGACGCGAT
TATTTTTCGGAGAACAAAAGGGGAATTTTAAATCTTTTAAACGTCTCAGG
CTTGGGGAGTGGGTACGGGCATAAACACTTCAAAGTCGAAAGAACATTTA
AAAAAATACTCTACAAGGTAGACTTAATTTACATTTTGGGAAGATCTAGC
AAATTCTGTCACACAAATGCAAGGCTTAATTTAAATTTTGGCATACTAGA
AAACACTGATTTTAAAATTTTCTTTAACTATAGTCTGCCTATAGTTCCTT
CAAAAGAAGCAAGAAGCAGGACTAAACTTAGAAAGATTACTCATTTCAAT
ATTTTTCACGGCATTGAACGCCTCGCTTTTATTGTTCTGTTTTCTCCGTC
TTTTNATTTCATTTTTTTTTGTTTTTTGATCACATTTTTTTGGTATTTAT
AAATTGTGCTTGATGCGTTGTTGGCATCATTTCATTCTTGACTAGTCATA
TGTTCACATCTTAATACTATTTGTAAACGAAGCAATCTTCATCAACAGTT
AATTAACAGGTAAGCAAAAGGTACTTTTAGTTTATAAGATTAATTCATTT
TATTTGGGATACATAATGATTAATACTTTTCAAAAAGCTATAGCTTGGTG
CAGCCTAGGATGCTCAGTCCCAGTGGAACAACGGTGTAAAAGTGAAGAGG
CTGAAGGCTCAAATGAGATAAAATTCGCTAGGAATTTAAGAAAAAATTAT
CATTTGTTCAAAAGCGAGGAGGTTGACGTCTCCCCAGTCTTCCCGCTTCC
GCTGGGCCTGATGCTGCCCTCCCTCCACTGACGGACTCGTGATCCTTATG
TTCTAGGTCTGCGATTCAAACTAAGTGTAACTGCATCGCAACGAGCCAGT
TACCACCCGTAGCGTATAGATTATAAGGGAAGGACGCGATTATTTTTCGG
AGAACAAAAGGGGAATTTTAAATCTTTTAAACGTCTCAGGCTTGGGGAGT
GGGTACGGGCATAAACACTTCAAAGTCGAAAGAACATTTAAAAAAATACT
CTACAAGGTAGACTTAATTTACATTTTGGGAAGATCTAGCAAATTCTGTC
ACACAAATGCAAGGCTTAATTTAAATTTTGGCATACTAGAAAACACTGAT
TTTAAAATTTTCTTTAACTATAGTCTGCCTATAGTTCCTTCAAAAGAAGC
AAGAAGCAGGACTAAACTTAGAAAGATTACTCATTTCAATATTTTTCACG
GCATTGAACGCCTCGCTTTTATTGTTCTGTTTTCTCCGTCTTTTTCCATC
CTGATTTTACCACGTCCTTGTTTTTTATATTATATGAAAAAAATGGCATA
AGGAATTTCCTTCGAACTTATTTTCGTACCGTAGTTTTCCATTTGATATT
TTCAAGTAAAGCGCAAAAGTATAGTTTTCTACTTGAAAAATCATGTGTTT
TTTAAAAAACCAGCCCCTTTTCCGAAAGCAAGAAGAACATGCCGACCTTT
CACAGGATGTCTGTAGCACGGCATGTTACGAAACTTATTTCAATAGATTG
ACTGTAATTGCTGACGTGCATTGAAAAATCAATAAATCTTGTTGACACAC
TTTTTGAAAAAACCTCTCAAAGCATTGTCTTGTGAAAGTGAAAGGTAGCC
CTGCCCTAAACCAGAAGTAAAACCACATTAAAATCATTCTGAAGACATAA
CTAGGTCACAGTGTGGATGTAAACCACACTGAAACGACCGCCTTCCATCA
CGCAATCACGCATCACGCTCGCGAAAGAGCGCGTGCACATTATTAACGCT
TACATGTCATGTACCAGATAAACATGTCATCTCCAGTACATTCTAGATTA
TTCATTGAAAACAGATTACAATATAGTCATTTTTCATGTCTCGATTATTC
AATTCCGAATAAAAGACATTCAGGGAAAAAAAAGAGAAACACCTGGGTAA
TCTAGTAATCCGAAAGTAAATGGTAGACAAAGTAATGAGCCAAGGCAAAA
CGAGATTAGCGTACCACTATGAAAGAAACCGCCTCCGGCGGTTGATTATA
CAATTCAAAAGTACAAGAAGTCAATAATTTCATTCATTTATTTTTTAGAA
ACCTTTGATACAGGTACACCAAAACAACAACCGAAATCAAAATCGATCTT
CATCCAAACCGAATCGAAAGAATGGCATTACCAAATCATAAAAACAGATT
TACTTTTATCTTGATAACAATTGCAATGATATATTATAGCCAGGCAGTAC
CCTCAACTCCGAATGAAACTGATAAGAATATCCAAAAAGATCCCGTAGCT
AGTCCTATAATATCAACAGGAAAAGAAACATGTTTTTCTGTGCCGTACAA
GCAAGATATCATTGTTCCCGGTTGTGCTGTCAAGACCATAGACAATCGTT
ACTGCAACGGTAATTGCGTGTCAGGATACGTTCCGGAGAATGGCGTAAAT
GGCCGGTATAAATGCTCCTCGTGTCAGCCGTCTAAGACAACTCGAAAAAT
GATTGAGTTGAATTGTCGTGACGGAAGAACGAAGCTTGTGGAAGTTGAAA
TTTTTGAAAGTTGTAAATGTCAGCAAAGTAGTTGTCAGGTGTCAGCACGT
AAAAATATTAAAGATAGTGAGACAACTATGAAGTCGTCAACAAATGAAAA
GAAATTTGATCCGGTGCGGCCATGCCGTTATATTTGCCGTGAATGTCGGA
AATCTCGTCGAGATTATGACGTTTTACAAACAAAAAAGGAGAAGAATGAA
TATTTAGTGAAATCATGTAGAACTGTGGAATGCAGAAAACGAATTTTGAA
CCACGAGGATGTAACTGAGTTAGCTAAAGTTCAAAAGAAACTTAAAAAAG
CTGTTTGTAAGGAGTGTAAACTCTGCAAAAAACGTAAAAGAGAAAAAGCA
AATGCATAGAGGATGGACTTGAAATTTGTGATATTCAAACCGGGGGACTG
GCACTTCCATAATGGCTGTCAAAATCTCCTTTCTCCTAACCACCGGGGGA
GATTTTCTATTGTTATTGATTTCATTACGTATGTGCTGGTCACGTGCNCA
ACCACCGGAGGAGATTTTCTATTGTTATTGATTTCATTACGTATGTGCTG
GTCACGTGCAATCATAGTTATTTTATAAAATTTTATAAGATTTCCCAAAA
TATTTTTTTGTACATATTAAAAAGTATTTGTTATTTATAATTTTGATGAG
AGATTTGATATTTTATTTTTAAAAGAAATTTCAAAAAAAATATATTCTTG
AAACTATATGATTTTAAAAAGTATTCACACAAAAATTCATCAGCGATGTG
AGCAAGAGATACAATGAATGGTAAAAAATGGACCGCGTCACATTTATTTA
AAAACTGATGTAAATATTTTTCATTTTATTACAATGAACCACTGGACTTG
TCGTCGATATTTATGAACAGTTTTCTTGTGTCATATTTTTTCTCT

Coding sequence (CDS) from alignment at scaffold_311:952928..956872-

>TCONS_00058557 ID=TCONS_00058557|Name=TCONS_00058557|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_311:952928..956872- (Clytia hemisphaerica)
ATGGCATTACCAAATCATAAAAACAGATTTACTTTTATCTTGATAACAAT
TGCAATGATATATTATAGCCAGGCAGTACCCTCAACTCCGAATGAAACTG
ATAAGAATATCCAAAAAGATCCCGTAGCTAGTCCTATAATATCAACAGGA
AAAGAAACATGTTTTTCTGTGCCGTACAAGCAAGATATCATTGTTCCCGG
TTGTGCTGTCAAGACCATAGACAATCGTTACTGCAACGGTAATTGCGTGT
CAGGATACGTTCCGGAGAATGGCGTAAATGGCCGGTATAAATGCTCCTCG
TGTCAGCCGTCTAAGACAACTCGAAAAATGATTGAGTTGAATTGTCGTGA
CGGAAGAACGAAGCTTGTGGAAGTTGAAATTTTTGAAAGTTGTAAATGTC
AGCAAAGTAGTTGTCAGGTGTCAGCACGTAAAAATATTAAAGATAGTGAG
ACAACTATGAAGTCGTCAACAAATGAAAAGAAATTTGATCCGGTGCGGCC
ATGCCGTTATATTTGCCGTGAATGTCGGAAATCTCGTCGAGATTATGACG
TTTTACAAACAAAAAAGGAGAAGAATGAATATTTAGTGAAATCATGTAGA
ACTGTGGAATGCAGAAAACGAATTTTGAACCACGAGGATGTAACTGAGTT
AGCTAAAGTTCAAAAGAAACTTAAAAAAGCTGTTTGTAAGGAGTGTAAAC
TCTGCAAAAAACGTAAAAGAGAAAAAGCAAATGCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036884XLOC_036884Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Cerberus family proteinTCONS_00058557-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058557-exon-scaffold_311-1575043694:956704..956872TCONS_00058557-exon-scaffold_311-1575043694:956704..956872Clytia hemisphaericaexon
TCONS_00058557-exon-scaffold_311-1575043694:952928..954274TCONS_00058557-exon-scaffold_311-1575043694:952928..954274Clytia hemisphaericaexon
TCONS_00058557-exon-scaffold_311-1510915933:956704..956872TCONS_00058557-exon-scaffold_311-1510915933:956704..956872Clytia hemisphaericaexon
TCONS_00058557-exon-scaffold_311-1510915933:952928..954274TCONS_00058557-exon-scaffold_311-1510915933:952928..954274Clytia hemisphaericaexon
TCONS_00058557-exon-scaffold_311-1491911889:956704..956872TCONS_00058557-exon-scaffold_311-1491911889:956704..956872Clytia hemisphaericaexon
TCONS_00058557-exon-scaffold_311-1491911889:952928..954274TCONS_00058557-exon-scaffold_311-1491911889:952928..954274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:952928..956872 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.841477	1.06816	0	0	0	0	0	0	0	3.47172	0	1.47667	47.6777	51.2713	62.8945	38.7391	0.832281	10.4221	0	0	0	0	1.22115	0	0	0	0	0	15.0049	11.2836
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006207Cys_knot_C
IPR029034Cystine-knot_cytokine
IPR004133DAN
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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