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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058550 ID=TCONS_00058550|Name=TCONS_00058550|organism=Clytia hemisphaerica|type=transcript|length=979bp
AGTCTTTAgagtaaaaaaatacaaatcgaTAAcagaataaaatgaaattt
ttgcagCTTCTACCATTGTAACCTACAATAATGGTCGGGGTATCAACATT
GAAGAAAGTTGCAATTTATGGTGGTGTATTTACTGTTGCTTCCTGTTCAT
TCTTCTACTACAAAATACAAAGTCGTTTTGCATCTGGTGACTATTATCGT
TTGTCCATTGAAGCATTACGTAACGATTCTCGATTAGCCAATGGGCTTGG
ACCACCTGTTCGCTCTTTGTTCTTGAACCTTGGGGATAGTAATAATCGAT
TATCGCCCACAGAAGCACATttgtCAATTCCAGTTAAAGGAACAAAGCAC
AAAGGATTTCTGCACACCAAATGTTCCACAGACGTCCAAGGGGAATGGAA
GATCAATTCCCTTGAATTAGAAGTCAATTCAAAAAGGTTTGAAGTGAATT
ATTCCAAGAGTATAATTGCAAAGGACGAAATTGACAACGAAATTCTAAGA
GattgatgaaattggccaagtTCAATCTTGTAAAATGACTATATAATGGA
ATAGCTTGTCGCGGCTTTTGCAAGTTGTTTTGGAAACAGGACTTAGAGGA
ATGAACTCAAGGCAATCTTCTCACCAAATTACCAATTTTTATGAACTTCC
TAAGAAGGAATTCTGTCTCCTTGAATAGGTAAATAGGAAATCGGTGCTAG
AACGATCcacataaaattatttttttgaatggtGTGACACAGAGAACCAA
CAATAATATTGATTTTACTCTAACTTTGGACGAGGTATATCATTCGATTT
ACATTAGTTTCAGGAATCAGAGCTTATGGAACAAATAAAAAGACGTACAA
ATTATCTGGAAATTCCCTTGCATAATCTTCTTTTAAGCTATACAAAACTA
TTTGGAGTCTTGCTTTAGGTGAAATGCCTTTTATTTCTCCGCTCGAAAAG
cttttatgaattttctatTAAGGCGTCCA Run BLAST on NCBI transcript from alignment at scaffold_311:864393..873448- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058550 ID=TCONS_00058550|Name=TCONS_00058550|organism=Clytia hemisphaerica|type=transcript|length=9056bp|location=Sequence derived from alignment at scaffold_311:864393..873448- (Clytia hemisphaerica)
AGTCTTTAGAGTAAAAAAATACAAATCGATAACAGAATAAAATGAAATTT
TTGCAGCTTCTACCATTGTAACCTACAATAATGGTCGGGGTATCAACATT
GAAGAAAGTTGCAATTTATGGTGGTGTATTTACTGTTGCTTCCTGTTCAT
TCTTCTACTACAAAATACAAAGTAAGTTTATTTCAATACATTTTGCTTGA
TGATGCTTGGTTTCGTACTTAGTCTCCTTTATATCCTGCATTAGTAAGAT
TCTAGCAATTTCATTGGTCAAAAGACATCACGTGGAGGTGGGTTATATAC
TGTGTCTATCTTCCTCGCATTCGATTGAAAAAAAGAAGACATTGCATATT
GACGAATGCTCTTTCGAATGTTTTGTTTTGAAAAGACAGAAAACTCGGCA
AGCCTCACCAATACGGTTTTCGATGACCCTGTATATCCCGTATCCCATCT
CGAGAAGACTGTGTAACTAATATTATTCTCAACTTCAGGGGCAGGCTGGA
GACTTCAAAAATGATCGGGTTTGGCTGAAATTTGGCACACTTGTTCCTTG
GGTGAATATCTGGGGGTGTTTTTTTTCATTTTTTGAAAATTTTCATTTTT
AAGGGCGTGGTCACAAGTTTTCGCCAAAACGAGGCTAAAACNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCTATGATACAAAAGCAGTACTCAAGCATCTTGAAAGATC
TGAACAAAAAGTTTCTTTTTGACTATATTTTTAGCGCAGCTGGGGCAGCA
GCTGGTTCATTCAAAAACAGCTTTTTTAAGCCTCAGGTCTATTGAAAATT
TGAACCATAAATTTTTTTAGGACACATTTCTGACATTTCTACGATGTTAA
AAATATTGTATCGAAAGGAGTCTTTTTTCACTTCAAATCTCCACATTCTT
CTGGAGAAATGCAAAATTATCTGCTACCCAATCAGACCATACACAGAATG
CAATTTGATATAAAAATTTCCCTTCACTTTTTTAGGGTAATTCAAGATGA
AACGCTGCAATCTTTTAATAATTTACGGTGAAATTTCCGCTAATCATCAA
GTAATTATTGAAAGATTACAGTTTTTCACCGCCAATTCATCTATAGTCAA
GGTAATTGTTTTTTTCTTGTGAAACAGTTTGCAAATTTCATCTAAAAATT
TACAACTATAAATCGTGCGAAAACACAAATTTGGTTTGAATCTTGTAAAA
AACTAAAAAGTTTATCACAATTCCTGAACCAATGATCAAAATTACTTTAA
ATTTGGAATGTAGGGTCACTGTGACGATTGAAATGTATTTGTAAAAAAAA
ATTCCCCAAAAAATCTGTGGTTCAAATTTTCAATTTTAGACCTAAGGCCG
AGAAGGCATTTGACTGCAAACCGAATGCTTTGCAAAAAATAACTTGTCAA
AATAAATTTCTTTACTCAAATATCCTTTTAAATGATCCAAGTGGCATACC
CATAAAATAACACGTAAAAATGAATTGATTTATTCAAAATTGAAAAAAAA
TAAGATAGAAATTTCATACAACATTGATTTTTGCATGACAAAAATAAATA
TTGAATACAATGTCCTTATATAATGCCCATCTTGAATATAGTAGGGCAGA
AAAGCAACTATTACTAACATATAGCAGTCAATAAGAAGATAACTAAATAA
AATTCTTTTCTTAATGACTACCTTGCTAGGAATGGTTGCTACTTTGTCCA
CAATAGCGCTCTGCAACACATACGTCATAATTAATACTTTTCACTTTTTT
TGACATTTGTACAAGTTGCAATCCCACAATTCAACGCAGCTCAATTAAAG
ATACGTGCAAGCTGTTATATATCGAGAGTAGTGATTATATCAAAAATAAA
ATCTATTTTTAGGTTCAGCGCGGTGCCTTATTGAAGTTGGTGTCAACATC
ATTGGAAATGTTTATTATATATACTTTTCTAAAAATAAAAAATTTTAACA
CGCTACTTGTATAATTTTTCATTATTTTGAAACTACCTAGATTATTTATT
TTGAAACTTTTATATTTTTAATAATTATCAAAATTATAATCAGTATATGA
CAACTTCGCACCAGGAAAAAATTTGCTATGTGTGACTAGTAGTATAGTGA
CTAGTAGACTACAGCTTTATTCAAAATTTTAAAAGCTTTCTCAAGTTTTT
CAATAAAACTGCAATTCACCAATAATCTTTAATTTCACAAGTTTGGTATA
ATTACTGATTTTTGCTGTGTATAGACTGCAGATGTTTTCACGGGTATAAT
CATTTACAATATCATTTTTTATATATGAGTATGATTCATTCTTTTTTTTG
CAAACCACACTGATCCTCTTTTTTCGTTAGCTCGCGGCCTGTAAGAAAAT
GACAAATTAAAAAAATTTTGATAAAGAAAAATAATGCATCACACGTACAC
TTGTAAAACTTGTAAAAAAGCTGTGATTGAAAAATGCGGCTCTAATAAAA
TTTTCCAATGAGCAATCAGACAAAATAATCTGCATACACTGGAGAGTGTT
ACAAAAAGATTAGTCTTTCAAAATAAAAGAAAAGAGCCGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAA
AAATAAATTCAAAACAAACCATTTACATAAAACACCTTGTTGCAAAGAAG
TTACAAACTAAAGTACTAACTAATAGGAGGCTAAGAGACTAAAATGCCAA
CGAATTGCATAAAACATTTCCACACATTTAGATCAACTTTCTGTCGCCCT
GTTTTGGTATCAAATTCCAGTCGGGTCAATTTGTATTCACAGCAAGAACT
GCCCCGGGATTTACCAGTCAGACCCGACTGTTTGTTTACATTTGTTCGAA
CCGGGCCGGCCGATCACACCCCTAACCAAAATCCAAAATTTCCGCTTTTC
GACCAAATTGATATAGTCTAAGACAACGGCCTCTCCCGTAAAAAAATTCC
CCTCTTCACGTTTGTTCTTTTTTTAGATGAAACTCGTCTTAGACTATAGC
ATAGTCTAGGCAGGCTGGAGACTTCAAGGGCGAATCCCTGTGGGTGGTTT
TCATTATTTTATAATTTCCATTTTAAGGGGGTGGTCATGAGTTTTTAGTT
GAAATTGGTTACAATCTTACAATTGGGCCTACGAATGATTTAAAAACACT
AAAGTTGATCCCAGTGCGGTTAGCACGTTCGACAGTTTCTCTAAACGTCC
CGTTTATAAATAAGATGTGAATAATTACTTTTTACTCAATTTTCAAAGCA
GTCGGAATTCACACTCCCTTGACATAGGTTCTAATTATAACAAAATCATA
ACGGCCAAGGACTGCTACTAGCCTATATTTATTCCCCTGGACCAATCTTT
GATCGGTGTTTGTTAGAAGCTCGGTACCGTGAAATAGTAGTATTACTCGA
TGTAGGTCAAATTTATGGTGCTGTCCCTTACAAAAATTCTGGCTGGATAG
TGGGATTTTGCCTAAATTTGGCGCACTTGTTCTATGGGTAAATAAATATC
TGCGGTTATTTTTTCTTTCTTTGTAAAAATTGATTTAAAAAAAATTTAAT
TTAGCGAGTTTATGTATTCGAGATCAATCGAGGGGACGGTAAAAAGCAAA
GTTGACATGTCTCCAAAATCACCGTTCACTTTGCTCGACGACGGTAAAAC
CACCAAAATACCGTCGTCTGTTTAGGTGAGCAAAGGTGATATAGAGTCGT
ACATCAACTATCGACTTTATTATGTATCGATTTCACTTACCATCGCCCTC
GACATCCTCCGATACATAAACTCGGTTTTATCTCCAAAACTAAGGAAATA
ACTTTGGAGAAGCCTGGGGTCTTCAAAAATGGTAGGATTTTGCAGAAATT
TTGCACTTGTTCCATTGGTGAAAACTTCCAAAGTATTGATCCTTGCTTCA
ATCAAACCTTCAAATTGTTGGAATACTGAAATAAAACTTCTAAAAACTCC
GATCAGAGTATATCATGGTTTAAAGGGGATGGAAGGTTTTCACATAATCC
TTAAAGTTATTCTTCTGCTCTCTTTTTTAGGTCGTTTTGCATCTGGTGAC
TATTATCGTTTGTCCATTGAAGCATTACGTAACGATTCTCGATTAGCCAA
TGGGCTTGGACCACCTGTTCGCTCTTTGTTCTTGAACCTTGGGGATAGTA
ATAATCGATTATCGCCCACAGAAGCACATGTAAGAAAATAGGGGTATTAT
TGTTATTAAAGGGGTCGCCAATTTTCTTACAAGTTTATCTGGTTAGGTAG
TTTTTAGAGTAGTTTAAGTAAGTTACATGTTAGTTTAGGTATTTTACACA
GGAAAAAATATTCGAATTCCATGCCTGGAAAAATACTATTTTCAGGTGGA
ATTTATTTTCACCCTGGAATTTTTTTGCTTCATTTTCTAAGAAGGCTGGA
ATTTTATAAAAACCGGTGTGAAAATTGTTCCTTTCCAGCCTTTCAACACA
AAAACTCTTGTCTGGAATTTCATAATTTTCCAGGTGGAAATTTTCCAGGC
TGGAAAATATTAAAATTCAGGTATTTTGCCATTATTTTCAAAAAAAATAG
TGACTTGGAAAATCCACCCCTAATTTGATTACTTTCCAGGGTGGTAAATT
TCCGGGTTGGTAAACAGCCATATTCAGGTCTGATTTTTCTTGCCATTATT
TCCCAGGCCTGGGATTTCTTGCCATTATTTCCCAGGCCTGGGATTTCTCG
GGTTGTAAAATGATCATTTTCGGGGTGGGATTTATTTTCCAAAATCAGAG
ATTTGAAAACCCACCCCAAAAATGGGCAATTCCCTGGGATTTCTCGGGAT
GTAAAATGTACGCATGTGCAAAGTTAAAACCACAAGTGATTTTTCAGTCA
AAAGTGTTCGAGTCGTATGTAAACCAAACCATTTTTAGGGTGTTTTCGAT
CAGTGTGTAACACAACGCTAAAGGTGAGGCGTCCCGCAAGCCAAGGGCGG
CCTCATTCGTTCGCAATGGACTTGCGTCGCAAGGGCTCAGTGGATCGGTG
AGACGGGTTTGAGGTCATTAAGTTGGCTCTCTAGTGCAGCTCCACTGTTG
TAATAAAAGTGCCGGGATTCTCAAAGTAGATGTCAGAACGGATGAGAGCT
ATCGAACCAATGCTCACAGAAAGATCGAATACATTTAAACACCCCTGTCT
CTGTGACCCAGTGGGATCCACCCCACTGCCCACCAAAAATGGCTCATTTT
TCAGCCCCACTGGACAAATCACTCACCCCACTGGAATGTTGTAGTAAAAA
AACACCCCATTGAAAATGATAAAAAGTTTACACATACCCCACTCGAAATG
CCCTCATTTTAACGTACCCCAGTAGAACTTTTCTTTCAAAAAATCACCCC
ACTAGAATTTTCTCCTTCCCCTTCTTTAAAGTTGAAATATCCAAAAGAGC
CAAAATAATCTGCTCGCTTCGCTCCCTCGCCGTCAAATGTTCCACTTCAA
TATATTAACTGTATTTAACCCGATTTCTAATGTCATTGTCATGGTCATTT
TAAAACGTAGAAAATGCCTAACGAGAGGGGTTGAAAATCAAAAATTTCTG
TCAGCGCAAACCACAGTTGTACTTGTACCTTTCTTTCTTTAAAGCTAGGT
TATAGCCTGAAAGATTTTCGATAGAGGCTTTCTCACTTGCGTAGATACTG
AAAGAAAGACCTCTACTTAAATCATGTTGACTAAACATTACTAGGTTCCA
GATTTCATAAAATTTGATGTAACGTACTGCTCCCAGACCTCATTACATTT
CCTGTTACAGTGTAAGAGTAAATCTACCTGATCAAGATGATATTTCTAGT
GATATTTAGTAGCATGTAAGAAGCAGATTTTTACTAGCACTAAACCAAAA
GTTAGCCAACACCTTCTATCTTTAAAACGCGACAAAATTAAGCGGTCTAC
CCAGTCTAACTCACAGGCTAACTAAAATTTAGCCCTTGCAAAAAATTCTT
TCTCACCCCAGTGAATATCAAGGGAAATTTTCGCCACCCCACTCAATATT
TGAAAGAATATTTTTCACCCCAGTGAATTTCAGGTCTTTTGATTCTCACC
CACTGGGTAATCAACACCCACTGGGGCACAGAGACAGGGGTGTATTTAAC
AATTTATTAAACGTAATTCATTTTCGGCATTTTCGCCCCCGAATATGTAA
ATATCCAAATTTCCAACCTGGAAATAAGCTCTTTTCAAACCTGAAAATAC
TGTTTTATGAATTATATCGAGGCTGGAAAGTTATTTTCTCTGGAGTGAAT
AAAGCACTTTTCCTACCCTGGAAAAAGTCACTTTTCCAAGGCTGGAAAAA
GTCACTTTTCCAAGGCTGGAAGAGGCATCAACATTCCAGGGCTGGACCAG
CCCAGGAATTTAGCAATTTTCCAGGTGGGAAAGAGGTCAATTTCCAACCC
TGGAATTCGATAGTTTTTTCATGTCTTAGGGGGTCGTAAAGCCTGCTTCC
CAAAAATGCATTCAGAACCCGGATGTTGAGCAAAAAGCTGGTCTTTAAAT
CCTACTCCTGCTCTTTTAAAGCGATTCTAAATCCAGATTGACACTAAATA
CTGAATAGCTAGGGGGGGAACTAAGCTCTCGAAAACATTGCAGTTGATTG
TTCTTTTTATTTTTGACAATAGAATCTCTACTTCTATACAGACCATCAAT
TTTCAGTTCGAAGTTAAATAAGTTGAATAAGTATTGAAACGAATGGTTTA
AATTTTTATTGGATCAACTGAATATTTAGCATTGATGATTTAGCAAAAAT
AACATCTTCATTCAATCATGGAGGTAGAAATTCTACCTCCATGATTCAAT
GTAGAAGATCGGCTTTAAGCTGTAAATTTTTCACTTTTTTTTTACAGTTG
TCAATTCCAGTTAAAGGAACAAAGCACAAAGGATTTCTGCACACCAAATG
TTCCACAGACGTCCAAGGGGAATGGAAGATCAATTCCCTTGAATTAGAAG
TCAATTCAAAAAGGTTTGAAGTGAATTATTCCAAGAGTATAATTGCAAAG
GACGAAATTGACAACGAAATTCTAAGAGATTGATGAAATTGGCCAAGTTC
AATCTTGTAAAATGACTATATAATGGAATAGCTTGTCGCGGCTTTTGCAA
GTTGTTTTGGAAACAGGACTTAGAGGAATGAACTCAAGGCAATCTTCTCA
CCAAATTACCAATTTTTATGAACTTCCTAAGAAGGAATTCTGTCTCCTTG
AATAGGTAAATAGGAAATCGGTGCTAGAACGATCCACATAAAATTATTTT
TTTGAATGGTGTGACACAGAGAACCAACAATAATATTGATTTTACTCTAA
CTTTGGACGAGGTATATCATTCGATTTACATTAGTTTCAGGAATCAGAGC
TTATGGAACAAATAAAAAGACGTACAAATTATCTGGAAATTCCCTTGCAT
AATCTTCTTTTAAGCTATACAAAACTATTTGGAGTCTTGCTTTAGGTGAA
ATGCCTTTTATTTCTCCGCTCGAAAAGCTTTTATGAATTTTCTATTAAGG
CGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058550-exon-scaffold_311-1575043694:873278..873448 | TCONS_00058550-exon-scaffold_311-1575043694:873278..873448 | Clytia hemisphaerica | exon |
| TCONS_00058550-exon-scaffold_311-1575043694:867720..867868 | TCONS_00058550-exon-scaffold_311-1575043694:867720..867868 | Clytia hemisphaerica | exon |
| TCONS_00058550-exon-scaffold_311-1575043694:864393..865051 | TCONS_00058550-exon-scaffold_311-1575043694:864393..865051 | Clytia hemisphaerica | exon |
| TCONS_00058550-exon-scaffold_311-1510915933:873278..873448 | TCONS_00058550-exon-scaffold_311-1510915933:873278..873448 | Clytia hemisphaerica | exon |
| TCONS_00058550-exon-scaffold_311-1510915933:867720..867868 | TCONS_00058550-exon-scaffold_311-1510915933:867720..867868 | Clytia hemisphaerica | exon |
| TCONS_00058550-exon-scaffold_311-1510915933:864393..865051 | TCONS_00058550-exon-scaffold_311-1510915933:864393..865051 | Clytia hemisphaerica | exon |
| TCONS_00058550-exon-scaffold_311-1491911889:873278..873448 | TCONS_00058550-exon-scaffold_311-1491911889:873278..873448 | Clytia hemisphaerica | exon |
| TCONS_00058550-exon-scaffold_311-1491911889:867720..867868 | TCONS_00058550-exon-scaffold_311-1491911889:867720..867868 | Clytia hemisphaerica | exon |
| TCONS_00058550-exon-scaffold_311-1491911889:864393..865051 | TCONS_00058550-exon-scaffold_311-1491911889:864393..865051 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:864393..873448 - |
Blast
The following BLAST results are available for this feature:
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