TCONS_00058519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058519
Unique NameTCONS_00058519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058519 ID=TCONS_00058519|Name=TCONS_00058519|organism=Clytia hemisphaerica|type=transcript|length=1576bp
CTGGAGACGACTCAATTTATTGTTGATATAAACGAAGGAGTGCTCTTGTT
TGTCATATAAGGAAGAACTATCGGAGCATCTACCTCCATCGTATGGCTTA
TTTATCCTAAATATATTGAAGAATAAACGAACGTCAGTCACctatatttt
catttatttggTGTACGAGAGTAAGAAGAAGTGATctagtaaaaaaaaGA
GTTTGACAAAATGAACATGTTACTCCAAACCATGGTGCTTTTGGGTGTTG
TGCTCTATTCAGTCAAGAGTAAAGACAACAGAACACGCATCGCCAAACGT
TCAGCAAGTGTTTACAGTGTAGAAGGTTGCTTCAGGATGTTTCCACCGGG
TTCTTTGGATTCATCAGACATGGGAATTCATCAAAGTTCCAATATCAGAT
GTCAAGAAATTTGTCGTGATAAAGGATACGTGCTCGCCGCTACTAAAGGC
CAGATGTGTCATTGTTCCAATATTTATCCACGAGGAAAAAAAGTAGTCAA
TCAAGAATGTTCTACAAGATGTCGTTCATATACACCATGCCATGATGTCC
AGAGCTGCTGTGGAGGTCCCAACGCATACTCCGTTAGCGTGGTAGGAGAT
ATTGACGTCGCCAAACAAACGTTGAGAAGACTGGCCAATAAATGGCAAAC
GAATATGGGATATCATAATTCAATGTTGAGACATGTTGGATTACTTTACG
ATGCCGATTGGAGATCTTCTATCGAGAATGGAGGCTGGTCGAAATGCAAT
AAGGAACATTACATCAATGGGCTATCAAGAGAAAACCAATACAATGGAAG
ACGAATCAGATCCTTTGACTTCGAAACCCGAACGTGTCAAAAATTATATC
CCTGTTATCTGTATGCCAAGATCTTATGCTTATGAATGCAAAAAGGTTCT
TGCTGTCTCAATATCATCATCCAGTACTTTCACTATCGGCTCTGGTTTCT
CGATGTCAACAACGTTCGGAGTGAAAACATCTTTCGAAGCCAACTTCTTT
GGTCAAAAGTTCACCAACGAAATCTCCTTTCAGCTGTCAATGTCATCATC
GTTCGATATTAGCCGCAGTACTACTAGAACCAGAACGGTAACCGATACAA
CATGGGTGACCGTTAAGGTTCCAGCTAACCAGCAAGTTATGATTGATCTC
CTTCGACAGAAAATCGACATCGTTTACAAATGGAGTGGCGTTTTTCGTCT
TCTTGGTAAATACAAAATGAATTGGCAGACAGCAAAGAAAGAAGAAACGA
AACAAGATATCACAACAGTATTGAGTGGTCCTGATCGTGAGATGTATGCT
TTCGGTAAATGGAAATATCCCAATACTGACGTCTTACAAGTTGTGGTGAC
TGATAAATATGGTGAGAAGAAAGGATGTGAACATGCAACAGGTGTTGATA
AAAACTGTCtcattgattgatttaaaatttgaaattgttttcttttggcA
GTGTGTGTATCGTACCTTTTAACAGAATATATCTTTGAGAAAGTTTTATC
CTATATTTTACCATGTCTTTGAGTAATTCAAGTTTTAAGACGTCACCATC
AATGACCATAAATCGGTTTTCCTGTA
Run BLAST on NCBI

transcript from alignment at scaffold_311:255704..262451-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058519 ID=TCONS_00058519|Name=TCONS_00058519|organism=Clytia hemisphaerica|type=transcript|length=6748bp|location=Sequence derived from alignment at scaffold_311:255704..262451- (Clytia hemisphaerica)
CTGGAGACGACTCAATTTATTGTTGATATAAACGAAGGAGTGCTCTTGTT
TGTCATATAAGGAAGAACTATCGGAGCATCTACCTCCATCGTATGGCTTA
TTTATCCTAAATATATTGAAGAATAAACGAACGTCAGTCACCTATATTTT
CATTTATTTGGTGTACGAGAGTAAGAAGAAGTGATCTAGTAAAAAAAAGT
AGGTAATTTTTCTCTGTATAAAGTTACGACAAAAGTCAAGAAACATCGAT
GCTTTTGGTTGTAGTGTGACTGGGTGGTTGTCTTATTTCACACCCCTTTT
TCTTACGCCCCTGTGTCACAGACAGAACGGTGGAACTCCCACGCCTCACT
GGAAAATTTCAAAATTTTCTTTTCTGATGGGAAATACTTTACAATTTTAG
GGCCACCGGAAAATTGACTTTATTATCATATACCCATTGAAAATTAAGGA
AATTGATACTTCAATGGATTTTTTCTACAACAGAACTACAAAATATCTGT
CTCCATCAGGCATTCGCTAGAAATTTTAATCGCTACTTTGGGAAAAGGTT
CCATTGGAGCTGTGAGCCAGGATTGTTTCTGTCCTGTGAATTTGGACAAG
AGACAAAAATTTCTATTTCCCCCAGGCAAAATCCTAAGGGCGAAATTTTT
TGAAAATTTCTAACTCACTTTTAGACATTATCAAGTATACCATTCGAAAG
CTCTCGAAAAACTATATATAAGACTTTTAAACGGTTATAGCCGATTTCCT
TACCTAACTCGAGATATTTCATGCGCAAGTTCCACTTTTCGCCACATTTT
GGTCTAAAATGACCATAAATANTTTCATGCGCAAGTTCCACTTTTCGCCA
CATTTTGGTCTAAAATTGACCATCTATAGCATCTTCTGCGTGAATTATCT
TTAGTTAGGTAATGAAATCGGCTTTACCCGTTTAAAAGTCTAGTTTTTCG
AGAGCTTTCGAATGGTATACTTGATAATGTCTGAAAATGAGTTTGAAATT
TTCAAAAAATTTTGCCCTTAGGGTTTTGCCTGGGGAAAAAAGAAATGTTC
CAAAAAAAGGATGTTCCACCAGTGGGATTTTAGGGGATTTTTTCCTGAGG
CATAAAAATCCTATAGAGAAGGTCTGGAGAAAGATTCAGCTGGATCTTAT
TTTTTCCCTTAAATGATGCTAAACAACCCCACTATACAGTTAACTCTGTA
TGTCTCGATTTAGGAGTTTGACAAAATGAACATGTTACTCCAAACCATGG
TGCTTTTGGGTGTTGTGCTCTATTCAGTCAAGAGTAAAGACAACAGAACA
CGCATCGCCAAACGTTCAGCAAGTGTTTACAGTGTAGAAGGTTGCTTCAG
GTAAGGTGGTTTTCCATTTGTCATTGTACTTTGTCTTTGACTTTTTGATA
GTCGGCTTTTCTGAAATTATCAGCTATTTTAGTTAAAAGCAATTTTGCAA
ATTAGAGCTTTGAGAAGCAATTGAGGCAATAAATTTAGTGCTCTCTCTCT
CCTCCATTACTAAAAATAAATCAACAGCATTTTATTTTCTAAGAGACTAT
AGGGCTATAGGCAGTGAAAAAATAACAACATTTGATTGGCTGTGTTTTCA
ACTGTCATTAAGATCTGGGAAATTTAAACTCAAACCATATGCTGTTCATT
TCGCCATAAGTATATAAGATTTTGGTCAAAATATATTGAGATTTTAGTGT
ATTTCAACGTTTTTCAGAATTCAAAGTTCGGGCGAAAATTGCTATTTTGG
CACTTTAACTTTCTTTCATTAAATATTTTGATTTTGGAGGAGTTCGTTGG
CTTCTAGGCTATATTCCAAGCCTTATTAGAGCAAATTTGAGCCTCCTGAG
ATCGTAAGTCTTAAGTCTTAAATCTCTCTCTTATGTTATAATCATCCTAC
CGGTAAACAACGTTGTCTCAACGTCCATCTAATGTTCACAACGTCCATAT
AACGTTCCCGGGGGGGGGGGGGGCTGGGCAAAAGGACCGACGGGTATGGG
CGGGCACTAAGGGTGTCTTTTTCAAGGCACCTCAAATGCACTGTAAGGGT
CGGAAAAACTAGAGATGCACTGTAAGGGTAGAAATTTCAGAAAATTCTTG
AAAAATCTAGATATTTTGACCAAAAATGCTAGAATTTTGACCATTTTTAG
CACGAAAGGGATCGAAAATTTGGGGGAAAATGCACTCTAAGGGTGTGATT
TTCACTGATTTTTGCTGCACTGTAAGGGTGCAATTTTAATTGCCAAGTTT
TGGCCCGCACATACCGTCAGTCCGCAAACCCAGTGCCCCCCTCCCCCCGG
GATAACGTTAGACGAACGTATATGAAACAACGTTGTTTCTGCTGGGTTAT
GTCAAGTCAAAAATGAATACAGTCTACACTATAAAAGCTCAGATCATAAC
TAATTTTCTTTCCCAGGATGTTTCCACCGGGTTCTTTGGATTCATCAGAC
ATGGGAATTCATCAAAGTTCCAATATCAGATGTCAAGAAATTTGTCGTGA
TAAAGGATACGTGCTCGCCGCTACTAAAGGTACCGAATTAATGTACATAA
GATTTTTGAGAACTTTAGGATATTGGGGAATCGCATTTCATTCTCGCTTC
TTTCTTTTATTCGGAAGGGTTTTATTGGCTTCCAGGCTATATTCTCAGCA
TTATTGCAACTTTTTTTAAATCATAAAGACCTAAGATTAATCTGTAGTCT
AAGATTAAAACAATACATTCCAGAGGTAAGTTTGAACATTTAAAAATCAA
TTATTTTTAAGCGCATTCCCTTAATCAAATTTAATGACTAGAATTGTGAC
CGTCATGTTATCACAAATACTTATCCTAAGTAGCGTAAGTTGGTCTAATG
TCGACATCCCTCTTCTAATTTCGACACCCTTCTTTAGGGATAGGAATTAT
AGGAAGGTCGGAATCGCTGATGGAAACTGTTTTTCTTTACTTGGCGATCG
ATTGGAAAAAATTTTTTTGTCTATTAGCGATACCGACTTTCCTAATATTC
CTGTCTCTAAAGAAGGGTGTCGAGACTAGTAGAGCGATGTCGACATTAGA
CTAAGTTACGGTAGCCCAGAACTGTTCCATTCTTTTTACAGGCCAGATGT
GTCATTGTTCCAATATTTATCCACGAGGAAAAAAAGTAGTCAATCAAGAA
TGTTCTACAAGATGTCGTTCATATACACCATGCCATGATGTCCAGAGCTG
CTGTGGAGGTCCCAACGCATACTCCGTTAGCGTGGTAGGAGATATTGACG
TCGCCAAACAAACGTTGAGAAGACTGGCCAATAAATGGCAAACGAATATG
GGATATCATAATTCAATGTTGAGACATGTTGGATTACTTTACGATGCCGA
TTGGAGATCTTCTATCGAGAATGGAGGTTAGACTTTTATTAAAAGCATTC
TTTCCCAGCTTGCACACAACGTTGTTTCAACGTTTATCTAACATTCACAA
CGTCCATATAACGTTAAATGAACGTTGAAACAACGTTGTGTGCCAGTATT
CTATCATCTCAACCCTATAATTACTGAAATTGCAGAAATAGCATTCCGAA
ACCATCCCCATTAGATTTTTTAACCTTGGAGCAATAGAATTTTTATCCCC
ATTGAGATTTCAATCGAAATTTTCATCCCCGTTGTAGCTGTAGGAAAAAG
TTTCACCGGGGCTGCGAGACAGGGGTACGTTTATCGGTGAAAATAAAGTC
AGCTTGATAGGCGTATAACATATTTAGGGAGTACTGACTAAAATTGTCTT
TAGTTTTTGCAAAATTTTAAATAAATAACACACTTGTTTAAATAAACAAA
GCATGCTAAAAATATTTAGAATTTTGAAATAATACAGAGTATTAGTGTAG
AAACATGTAGAAACACTATGAGATTCGATCGAGGTAAATCAACTGAAACA
GGCCATTTGTTATAAAAAGTGTTTATCTTGTTTTGATACAGGGCTTCCAA
ATAGACCTTTTTGATTCTAGGGCCAAATATAAGGCCTGGGGGGGCACTCG
ATTTTGAAAACGACCGTACATTCAGCCAAAAATCAGATCTCTAAAATTAC
AGTGCAGGAAAAATTTGGCTGAAAATCGACCATTATAGTGCAATTTTTTG
AAATTTTGGGCCCTTTTCAGGGCAAAATTGTTTGAAATTTCTCAAATTTC
TCAAATTTCCAAAGTCCAAAAAACCTACCCTTAAGGGCTGCACGTCCGGT
AGGTCACTTACTTGAAGTGCCCACCCCCCCCCCCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCCCCCCCCCCCCGGATATAAGGGGACCATTGGA
CCATTCATTTCTTTCCTTTTTCTACAATGTATATTGGGTTTCGTTATGGT
TAGTCACTAGTTTGTATTTTTTTCAGAGTGTATATAACTTCACTATATAT
CTTTTAGGCTGGTCGAAATGCAATAAGGAACATTACATCAATGGGCTATC
AAGAGAAAACCAATACAGTGGATCGTCGTCTGATCCTCTTGGAAGAATCG
ATTATGCAAGTTGCCAAAAGGAGCCTGGAGATCAAGTTTGCAACTATCAA
TTTGCTTTTCTTTTCACCAGTGGAACGGTTTGGAAAACTTGTAAACAAGG
ATACTTTATGTCTGGTGTCTTCACGCAACCAGGGGCTCAAAAAATCTCCG
ATCTTGCCCAATTCCATTGTTGCCGACCCAAGAAACAAAAAGAACAATGG
GGACAATGTTATAATCACGATGTATCTTCATCCTTAGATAATAAAGGTTG
GTCTACATGTCGATCCGGATATTTCATGGCTGGAATGGAACGAGGTGATT
GTGATGGTTTACACTGCGTCAATCAAATCAAATGTTGTCAAATGGAAAGC
CTGGCTGTCAGTGAAAACCCAAAACTGTCCATCAAGCTCAAGGACACCGC
AAACAAAGGACAATTGAAAGAATGCACCATGGAAGGGAGAGATCTTACAC
CTGAAAGTAAAACCTACGAATGCAAATCTCTTAATAGTTTAAAAGATGTG
GCAAGTTTGGAATCTGTATCTTTCAAGATGGAAGACGAATCAGATCCTTT
GACTTCGAAACCCGAACGTGTCAAAAATTATATCCCTGTTATCTGTATGC
CAAGATCTTATGCTTATGAATGCAAAAAGGTTAAAATATGTTAATTTTGT
TTTATGTTTTCTCACGAAGGGCAAGATAGATTGATTTAAAAATCTTTAAA
AGTTTAAATATCAGCAACTAGCCGTTTTGAAAAAAAGTTTTCATACTCCT
AGGTTCCAAATAGACGCCCAATCCCCCGCTTGTTGATTTTTCGACAATTT
TCCAAAGACCCTTTGACCTTCTTAGGACCCCCTGTTTATAAATTTTTAAG
AATATTTTCAGCTGCCAAAGGTGTTTATTTTTCTCCAAATAGCCTGATTT
TAGCCTACATTTACCTTATTTTTGGGTTTTCAGGAGTACAATTTCCAATC
CCCCGCAATTAGCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCCCTCCCCCGTTTATTTGGAACCTAAGAGTATACAATTTTCAGTT
TTTCGTTCTCTGACGACATTACGTCAGCCGATAGAAGTGTCAGCACTTAT
ACTTATTAGTCAGTTATTTGGCGATAACCTCAGTTTTCTTGTTAACAAAT
TTGTTTCAGTGTAGCAGGCGATTTTGGTCTTTTCTGTAAGGCATAATCGA
CAATTTTTCGTTTCTGGGGTGTCCGCAGGTGCTTTCCTAGCGACTCTCAA
GGTTATCGTGGGTGTGAATTTTTTTCTTTATTTATAACAATTGTTTTCTT
TTCGTATATCCCATCAGGTTCTTGCTGTCTCAATATCATCATCCAGTACT
TTCACTATCGGCTCTGGTTTCTCGATGTCAACAACGTTCGGAGTGAAAAC
ATCTTTCGAAGCCAACTTCTTTGGTCAAAAGTTCACCAACGAAATCTCCT
TTCAGCTGTCAATGTCATCATCGTTCGATATTAGCCGCAGTACTACTAGA
ACCAGAACGGTAACCGATACAACATGGGTGACCGTTAAGGTTCCAGCTAA
CCAGCAAGTTATGATTGATCTCCTTCGACAGAAAATCGACATCGTTTACA
AATGGAGTGGCGTTTTTCGTCTTCTTGGTAAATACAAAATGAATTGGCAG
ACAGCAAAGAAAGAAGAAACGAAACAAGATATCACAACAGTATTGAGTGG
TCCTGATCGTGAGATGTATGCTTTCGGTAAATGGAAATATCCCAATACTG
ACGTCTTACAAGTTGTGGTGACTGATAAATATGGTGAGAAGAAAGGATGT
GAACATGCAACAGGTGTTGATAAAAACTGTCTCATTGATTGATTTAAAAT
TTGAAATTGTTTTCTTTTGGCAGTGTGTGTATCGTACCTTTTAACAGAAT
ATATCTTTGAGAAAGTTTTATCCTATATTTTACCATGTCTTTGAGTAATT
CAAGTTTTAAGACGTCACCATCAATGACCATAAATCGGTTTTCCTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036866XLOC_036866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058519-exon-scaffold_311-1575043694:262254..262451TCONS_00058519-exon-scaffold_311-1575043694:262254..262451Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1575043694:261102..261238TCONS_00058519-exon-scaffold_311-1575043694:261102..261238Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1575043694:259923..260035TCONS_00058519-exon-scaffold_311-1575043694:259923..260035Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1575043694:259076..259360TCONS_00058519-exon-scaffold_311-1575043694:259076..259360Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1575043694:257885..257944TCONS_00058519-exon-scaffold_311-1575043694:257885..257944Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1575043694:257223..257324TCONS_00058519-exon-scaffold_311-1575043694:257223..257324Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1575043694:255704..256384TCONS_00058519-exon-scaffold_311-1575043694:255704..256384Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1510915933:262254..262451TCONS_00058519-exon-scaffold_311-1510915933:262254..262451Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1510915933:261102..261238TCONS_00058519-exon-scaffold_311-1510915933:261102..261238Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1510915933:259923..260035TCONS_00058519-exon-scaffold_311-1510915933:259923..260035Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1510915933:259076..259360TCONS_00058519-exon-scaffold_311-1510915933:259076..259360Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1510915933:257885..257944TCONS_00058519-exon-scaffold_311-1510915933:257885..257944Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1510915933:257223..257324TCONS_00058519-exon-scaffold_311-1510915933:257223..257324Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1510915933:255704..256384TCONS_00058519-exon-scaffold_311-1510915933:255704..256384Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1491911889:262254..262451TCONS_00058519-exon-scaffold_311-1491911889:262254..262451Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1491911889:261102..261238TCONS_00058519-exon-scaffold_311-1491911889:261102..261238Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1491911889:259923..260035TCONS_00058519-exon-scaffold_311-1491911889:259923..260035Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1491911889:259076..259360TCONS_00058519-exon-scaffold_311-1491911889:259076..259360Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1491911889:257885..257944TCONS_00058519-exon-scaffold_311-1491911889:257885..257944Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1491911889:257223..257324TCONS_00058519-exon-scaffold_311-1491911889:257223..257324Clytia hemisphaericaexon
TCONS_00058519-exon-scaffold_311-1491911889:255704..256384TCONS_00058519-exon-scaffold_311-1491911889:255704..256384Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:255704..262451 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.103378	0	0.0598682	0	0	0.178319	1.05058e-09	0	0	0	0	0	5.76804e-08	0	0	0	0	0.0451067	12.7622	17.8787	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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