TCONS_00058513 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058513
Unique NameTCONS_00058513
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3993

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058513 ID=TCONS_00058513|Name=TCONS_00058513|organism=Clytia hemisphaerica|type=transcript|length=3993bp
caaaaacaaaaatcaacaaaagATTGTGCGCTTCTTTAACGACGAAGATA
GCGACCATAGCCCGTTCTCCTTACATGAACTTGTTCGCGTTGGTGAGGCT
AGTGGTAAGAAACCAGGAGACTGGTATGGACCAAACTCAGTCGCTCATAC
GATAAGTCACACAGTCAACAACACATCACATCCGACCCTGGAAACTCTTC
GTGTATATGTTGCTCAAGATTGCACCGTGTACAAAGAGGATGTCATCAAA
GCGTGCACTCGTTGTAAGAATTGTTTCAACCCGGCTTGTCAAGATAAATT
CTGGAGATCCCTTCTTNAAGCGTGCACTCATTGTAAGAATTGTTTCAACC
CGGCTTGTCAAGATAAGTTCTGGAGATCTCTTCTCATACTTGTGCCAGTA
CGACTGGGAAGTGAATCACTCAACCCGATTTATATCCCATGTTTAAAGGC
ATTATTAGCACTGGATTGCTGTGTTGGAATCATAGGAGGACGGCCCAAAC
ATTCGTTATATTTCGTCGGTTTCCAAGGTGACAAACTGATACACTTGGAT
CCTCACTATTTACAAGACAAAGTGGACATGTCAACTAGAGATTTCCCTGT
TGATaGTTTCCACTGTCAATATCCGAAGAAGATGTCATTCGAAAAAATGG
ATCCTTCTTGCGCAATAGGCTTCTACTGTCGAACGCGcgctgattttgaa
aatttttgccaGGAAGCAAAAcagGTATCACCACCACCTAAACAACGTAT
TGAATATCCAAtgtttatcttcgatgaaggaTCTAATCCATCAAACGTAG
ATTTCGATTTTGTGGACAATAGTATAACACAAGGTATTGCCACTGTTACA
CTGAATACAGCTTCAAATAGTGGAcaggaaaaagacaaaaagaaacttaa
gaaattattgaaattgaaacggaaatcgaaatcgaaagaagGCGTTGGAG
AGGAAGGAACTGAAGAGGAAACAGTTGAGGAATATGTCTTGGTAGATTGA
TTCTGATTGGCTCGTCAAGTTTGCTCGACCAATAGAATCGAAGAATTGAA
TAATCACCATAACTGTCTATAGTAGGTTAGCTCTGATTGGCTTCTCTTCT
CGAGTTTGCTCGACCAATAAAATTGAAGGGTGCATCAATCGACATTATGT
CTGATCACCCGTAGATTAGTCCCGATTGTTTGCTCAAGTTGGCTCGACCA
ATAGCATGAAAGGTTACTTCAATCGGGCTAAATTGACCAACTGGATGATT
TGATCGGTACATTCCGAAACCATTCGTTTCAAAAAATCGATTTGGAACGT
ATAGACTTGATGAGTCGAAAATAACGAAACCGTTATCGGCTTTTCGAATT
ACAAAATAGTGAATATTTCGATTGTCGCTTTGTCCTTCTTGGTTATTCCT
TGCTTGGAAGATTTTggtcttttcaagaaaaaaattgaatatgggtatgg
aggatataacattttttgaaattagcccccggacattgtgaattttgacc
ccctGAACATTAACCCTCAAACCGAGCAAAATTACTCCctaacagagcaa
gtttaccccaggacaaggaaaattttgtagatttttcactaccccccccc
catttttagacaaaaaaaatttgattgttTTATTCAGAACCCTACTATGA
ATttagtggggggcgtacgggaaaGCGGTTTTCCGCGGTTTTCCGCGGTt
tgtcggtttatcggtgaagAGCTCAAAATATGTCGGTTTATATCGGTGAA
GGGAAAATATCACGGTGTCGGTGATGGAGCTGTTTTTGTtcggtttatcg
gtgaaaaaataaaaaaatagcgGTTTTTCGGTGATTATCACATACGTCGG
TTTCTGAGAATTAATTACCCTTGTGcataaataatcaaaaatcaagtCAA
GaagtaacattttctttgctcgcttcgctcgcagaAAACACCATTTTCAG
CAATAGCCCATTAGTAAAAGCTCTGATggaaaaaattgtttacatacagt
agcgtggtggcaggggggcaACTTCTCCCTCCCAGTGGAGactttttgaa
ggggcgccaaaagaagGAAGCCTTTCGTATTTGCTCTTTAGTATGTAACT
TTAGCGCCCCTTTCCCTTTAAGGCGCCCTTTTACTAAACTTTTGCTCAAA
TTCAAGctctattttggaaaaaaaatttccctcgcttcgctcgcgtcaAA
CAGAGTCAACTTTTTGCATTGAATCTTTTAGAATAGGCATAACCAATAAT
AGTTCCTCAAGGATCGTATGTGGAATTTTTCATAAGATTTGTCATAtatt
atatgactgattttaaagtttttataattctataaagttattaaaataat
ttaacgtggttttattttgttccTTTTCTACTCGAAAATTTTgtgatcgc
ttcgctcgcatttcaGTATCATTACATATACTCTAATTGACTTTACGCAA
TTCATCTCGATAAACAATGTCGCaaatttttcttgctcgcttcgcttgca
tttcctaaatgtttttgaaatgacCAAAAGTTCAAGTTAAACAAATTTCG
GTATACTAATGCGACCAAAAAGGGGGCGCCAGAATATGCCTAGGGGGCGC
CTTCagccaaaattctacttttgcctCCCCACCCTTGACCTACCCACCAC
TCTACTGTGTATATATGACCAGCCGAAAATAGAATAGTCCAGTCCAGTAA
TACTTTTAGGGCCTCAAAAGATGCTTTTTCCAAACACGATTTTAGAGATT
ATAATTTTTGAGTTGAAAACCGTGGACAAGTAACTTGCACAAATCTCGGC
ACAAATAAgtccatcaatttttttctcgctcACTTCGCTCGCATGGAGGG
TtgagaaaatacaaaagttttctCCATCGAGGGCAACCAACATAATAAAT
GCAGAAACCCGTATTGAATAGTATTGATTCACTAAGCCAGCTTATTttcg
caaaccatggttgcgcctcctgtTACCTCCTAAACAGAAATTTGAATTCC
TGCCAGCATGCAATGGAGATTATGGGTTAGTTTTGCTACAAAAATTTCGG
GGATACATGCGGTCTACTTTATTAAGAGCTACAGACCTTTTTTGAAGCAA
GAGTAAAAAGTCGGTGTCGGTAGAGAGGATAAATTttgtcggtttatcgg
tgaaagAGCTATTTTTGCGCGGTTTTTCGGTTTTTGGaagtcccgtacgc
cccccccccaatttacAAGTTAAATATCCAAGTTATCTGACTATTTATTC
AAATTGTTTAAGAATTTGGTTAGATATGGATTTGGTTATTGTTTGAAGAA
TTTTAGCCTAGCCTAGATGGTGACCAACGCTGTTTCAACATTAATGTAAC
GTTGTATGCACaaattttatatttgataaaagtaGAGTATagagatattt
ttattttttatgaactttTATACATTTTAATTCCATTTTAATGTTCAGAT
ATTTGACGACTAAAGGTATCTATTAATGATACAGCCTTCCCAAGataagt
cttttttataagaatgtactttataagaatattcatgttgaatttggcaa
aaaaattaagaacatgttaaaaggCCCAAAGAATAATCCGGCAACTGATC
CTAAGATTGCCACTGTTAGAGATTGGTAATACTGTAAATTGGCAATTATC
ACCCACTAAGGCTTGATAGCTTTACCAAAATGTAATTTTATGCTTCAGGC
TTGTATTACATATTAAATTTAGGTTAGATTTTGAACCTAagctaagaata
ccgtaagaatattttaggatgattttccccagaaaagttaagaataacCG
TTCTCTACATATATGACAAAAGCGTTTACGTTAGCCAGCTTCTTGATGGT
CCTAAGACTACTTGAGTCTGTGAAGTTTGAAATGTGTCTTAACCTTTaga
caccgctgtttttaaaaacagcgcgcgctgctgccgctgtttttttcatg
aaaatggaggtttcgcggaaaatgtcataaaatctgaaccgct
Run BLAST on NCBI

transcript from alignment at scaffold_311:163918..178417-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058513 ID=TCONS_00058513|Name=TCONS_00058513|organism=Clytia hemisphaerica|type=transcript|length=14500bp|location=Sequence derived from alignment at scaffold_311:163918..178417- (Clytia hemisphaerica)
CAAAAACAAAAATCAACAAAAGGTATCAAATTACTCTTTTACTGTAGTGG
TACAGTAGACTCCCAGTTATTCAAACCTGCACTTATTTGAATAATTCGGT
TATTCGAAGTGAAATGGCGTACCACTTAGATTTGCTTACCTAACTCAGGC
AAAACACTCTCGGTTATTCGAACTTCAGTTAATCGAAATTTAAGTTAATT
CGAAGCTATTTCTATTCCCCTTGGGCCAATTATAGGCTAAATCGCCCTCA
GTTATTCGAATTTTTCTTATTGGGAGATCGTCGAGTGAGAATATTGATTT
TCTACGATCAAACAGGTTTTTTCTTCAAAAAATCAGGTTTCAATATTCAT
GGCTATTTACTTACTTTAAGTAATTTTCCAAACTTGTATTGGATCCCATA
TAATGTGCATGCGTAAATTGTCCATCCCATTAAGGTTAAGTCGAAAATCT
GGCAGAAAAACTTTTCAGTTGTTCGAACTCTCGGTTATTCGAAGTAAATT
CTTATCCCCCTTGGAGGTATATTTTTTTTTATTAAAACGTCGTGATTTGG
GCTTAGCCTGGATATTTTGATAAATTTGAACCTAAAATGGACGTTTTATG
GGCTTTTTGAAATTAATTGATTTAAATATATAGAAATTGGTGCACAAGTC
GACATTTCCCAAAATTGAACAATATTGAACAAAAATGGGTCATTCGCCAA
AATTAATTCTCGCTTAATTCAGAAATTTTATTAGATTGCAAAAATAAATT
CCGCCAAATTTATTAAATTGGCGAATGGGCTCAATCGCCAAAATTTCTTC
TCTTAAGGTAGTAGAGCGTCGTCGTTCATGAGAGTTTCTCGTTCAATACA
TGTTTTTTTATAAGGAATTGTTAAGGAACTGCTCAGGCTGAGAGTAAGAA
AACAAGTTAAGGAAGAGACAGTTAAACTTGAACTTGCACTTAATTTATAA
AAGCCTAAACAAAAAGATGACAAAATATTGACGTAACAACATTCAATAAA
CGTCCTTTTTATGTACGATAGTCTGTTGTTATGCTTATACATTATTTACG
TACTTAGCAAATCCAACCTTAGCAAATCCAATCTGAGCAGCTAAAGTAAA
TAAAGAACTCGATAAGGAACTTTGAGGCTGAAATTCTCTGAAAAAATGAG
GAACTCCAGGCTCGGGAGTAATCCTGGTTGGATACTGGATGATGTGATAT
CTTATAATAAATGACTGCTCAATCGGTGCAGCGTGCCATAACACTTTGTT
AGACAAAGAATAAATAAACTCGATAATTTTTCCCCTTTTTTTGCAGATTG
TGCGCTTCTTTAACGACGAAGATAGCGACCATAGCCCGTTCTCCTTACAT
GAACTTGTTCGCGTTGGTGAGGCTAGTGGTAAGAAACCAGGAGACTGGTA
TGGACCAAACTCAGTCGCTCATACGATAAGGTAAATTTGAATTGATCAAC
TTTTTACGTCTCAGTTTTCTTTTACTTCATTCATATTTATATTTGAATTT
CCTGTTAATTTTAATGCCTTGAATTCATTCACTCGAAATTATCTTTACAG
ACAGCAAGGAACAAAATGTGTGAAAGGTAATTTTTATTTAAGAACATACT
TCACAATTATATGATGAATTGTCTTTCCAATCAATAGAATTTCCATCCAT
TCATAGTTTCTACCCCCCCTACATTTAGGGGGGTCTTTGGTTTTGATGAA
TCAAAAGCAAGGGGGTGTTGAAAGTATGACTTTCCTATGGGGGGTTGCCA
GTTAAAGGGGGGTCTTCTTACCTAAGGGGGTGTCTTCTTAGATAAGGGGA
TCTTCCTTGAATTATGCGAAATTTCAATTTTCTGATTTTCTAAGGGTGGT
GCGAAATTTTATATGAATTTCCTAAGGGGGGGTAGCACTTAATGGGGGGT
CCTCTTACCTAAGGGGGGGTCTTCTTAGATAAGGGGATCTTCCTTGAATT
ATGCGAAATTTCAATTTTCTGATTTTCTAAGGGTGGTGCGAAATTTTATA
TGAATTTCCTAAGGGGGGGTAGCACTTAAGGGGGGGTCCTCTTACCTAAG
GGGGGGTCTTCTTAGATAAGGGGATCTTCCTTGAATTATGCGAAATTTCA
ATTTTCTGATTTTCTAAGGGTGGTGCGAAATTTTATATGAATTTCCTAAG
GGGGGGTAGCACTTAAGGGGGGGTCTTGACCCCTCTAGAAACTATGCCAT
TCCATTCCCAAGATGACTATTGGTTTAGATAAAAAAAGAATTAAGTTATT
TGGCTATAGAAATATGCATAAATTTGGAGGCTTTTATTTATAACTTGCTT
ACAGTTGACACTTTATAATTCGACGCTCTACTATTCGGTACGCTCCATTA
TGAGATAACATTGAAAGTCAACGAGAATCAACGAAATATTCTCCTAAACG
ACGCTCAACTCGCTCTACTATTCGATACGCTCCCTTATTTTATGAAAATC
AAATTCCCCTTGAAAATCGAAGTATCTCAGAGAGCGTCAACTTTTTTTCT
GCTTTCTTTCATTTCTTAGTCACACAGTCAACAACACATCACATCCGACC
CTGGAAACTCTTCGTGTATATGTTGCTCAAGATTGCACCGGTACGTCATT
TGAAAAACATAATATTCCCCGGGGGGGGGGAGACTAAGGCAAATGAGTGT
TGGGTATGTGCGAACCATACGGGTCCCTTTTTGCAACCTAGATATTCCTC
GCATGTGTTTAAAAAGCAAAGAACAGCAAACTCTTGCAAGGTTCCCTATA
AAAAATCGATCACTCCTTGAGAGGTTGGAGCTTAATACTACCCAGCTGAC
GCACAACGTTATTTCAACGTCCATCTAACGTTCCCAACGTCTATATACCG
TCAGATGAACGTCGAAACAACGTTGTATGCCGGCTGGGTAAAGCGTGTAT
ATTAAAGGATCGATTTTTTCAATAATCAAGTCTCTCTTCCTTCTCTATCC
AGTGTACAAAGAGGATGTCATCAAAGCGTGCACTCGTTGTAAGAATTGTT
TCAACCCGGCTTGTCAAGATAAATTCTGGAGATCCCTTCTTNAAGCGTGC
ACTCATTGTAAGAATTGTTTCAACCCGGCTTGTCAAGATAAGTTCTGGAG
ATCTCTTCTCATACTTGTGCCAGTACGACTGGGAAGTGAATCACTCAACC
CGATTTATATCCCATGTTTAAAGGTAAGCATCCATCCTGATTATTTGAGG
ATTAAAATTAAGGATCAAAATTCAATTATATTTTAGACCTTTGTATTACT
CTCGGGTACCTAATAGCCGGTGGGGTTGGAATAAGCAGGGGGGGTTGGAA
AAAATCTCAAAACTTAATAAGCTGGGGCTGGGGGTTGGAATAAAAATGGG
TGGAAAAAAGGAGGCTAATACAACAGAATTAGGACAAAAGAGGGAACTTT
CAAAAACATTTTCCCAAAAATTAATAAGGGGGTTGGAATAAGAATGTCCT
GAGTCTCAATTCAATTATATTTTAGTCCTTTCCATTACTCATAACATGAT
AGGGAGTAATAACCACTCGGTAGATGCTCGACCAATAGATTTTTCTGTCT
CTTGCCAGGGAGCGATGGCCAATAAGTGGTCTAGTGCGTCAGCGTCTCAA
AACAGGGTTTCCCGGTTGGAATCCTTGTTCCTTCCACATTTCCGTTCAGC
ATAGCCGGCTGGCTTTTGACCCCGTGAAAACAATCGAAAGACTGTCTAAT
AGTCCTAGATTACTGGGCTATCCACTTAAAATATCGACTCTATCTATCTA
TTTAGCCAATTACAGCGTTGAAAGCTCCGACGTCTCCAAATTTCTGCATA
ATTAATTTACCAACAATTCAAGAGAGTGTGCTTATTTACTGTGTAAAATC
CATTTTCCCTCTCGGACGAAAAATTTTGCTTTGACCACTGTTAATAACCT
TAGAGCAACCTAGCCAGGTCCTCTTTCGAAGCCAGGTCCATTCGAGTGTA
AACGCGGAGTAATCAATAATCTTAGACCATTTTCAGACGTTACGGTTCCG
TTCCGACACGAAACGAAATTAAACAGTTCCGAAACAAGTGTCAAAATTCG
AAATGTCAAAAAAAGACGTTACAAAGCAAAACAGATGGAAACGGTTTTGC
TCCACTTTTTTCATCGGAACGGAACTGCTCCTTCTTCTTGCTCCGAAACG
TTCCGAAATTAATATGAACACTCTCGATCCGTAACGAAAATCACACAGGA
GCGAAAAGGAACCGTGACGTCTGAACATGGTCTTAAGCTTAACCCTTTAT
TTCTAGGCATTATTAGCACTGGATTGCTGTGTTGGAATCATAGGAGGACG
GCCCAAACATTCGTTATATTTCGTCGGTTTCCAAGGTAACTGTATGTTTT
TGTCTTTTCAATAAGCGTGTTCCACGTGTGATGAAGTTTGTGTTTTTTTT
CCTTAAGATTGTTAAAAATTTGTTTGGAATTGTGAAGGTAAAAATTCTCA
TTATCATTATTAGGAAGCTGAAAAAAAGCTTGGCTAGGCTAGGTGATGTG
GGCTGTGGACTTATCGAGATACGTCAAAATACAGTTGAATCTAATTCGAT
TTTCAAAGAGGATTGAGTTTTTAACGAGTGCGGGAGCGTATCGAATGGTA
GAGCATCGTGTGTGGGTGTTGGGCGAGGCCCTGCATCCATCCCATCTGGG
CAATAAGGAAGGTCGTTTTTGTTGACTTTCGATATTGTCGAATATTAGAG
TGTTTCGAATAGTGAAACGTCGAATTAGATAGCGTCAACTGTATATTAGT
TGTTTTTTTCAGTTAGAGAAATATTTTGATAATTTGATAACTCACCGTTT
CTTTTATGTTTGTATTTTTACAGGTGACAAACTGATACACTTGGATCCTC
ACTATTTNTGTTTGTATGTTCACAGGTGACAAACTGATACACTTGGATCC
TCACTATTTACAAGACAAAGTGGACATGTCAACTAGAGATTTCCCTGTTG
ATGTAAGTCAAACATTACCATTTCCCATCTCAAATCAATGCCAATCTTGC
GTGATTGCCGGTCAGGATCACAAAATACACCCCTGTCTCGCAGCCCTCTT
GGAACTTTTTCCCACGGTGGTGATAAAAATTTCTATCGAAATAACAATAG
GGATAGAAATTCTATTGTTCCCGAGCTTAAAATATCCAGTGGGGATGGTT
TTGGACCGCAAACACTGCGCTTGCTAAGAATTCGCCGGCCTAGAATCTAG
AAATCGCCAGAGTTATTTTTCATTTACCAAAAACAAGCAAAACCCCTGTT
TGGTGATAAATATTTGCGAGATAAAATTTCACTTTTTCTCTCTTGATCGT
CCTACCAATGCACTTTCAAAAGCCTAAGTAAAATTATTTACGATTTAAAG
GTAGATTGGTTGTATTATAAGTACACTTTTTTTATAAGAAAATCCAAATT
TCTTACTTAACTTTTTGGGTTTTAAGCATTAAAATGTTCTTAACATGTTC
TTATTCTAACCATTTTGTGACCATTTTCATCTATATTTTCCTAAGAAATC
GGGTGTTTTGGAGTTTTTTTAATTTTGGCCATCGAAACCTTATGTTCTTA
TATAGTTTGTTCTTATAAAAAAACGTATATCTGATTCCATTTCTTTTATT
TCAGAGTTTCCACTGTCAATATCCGAAGAAGATGTCATTCGAAAAAATGG
ATCCTTCTTGCGCAATAGGCTTCTACTGTCGAACGCGCGCTGATTTTGAA
AATTTTTGCCAGGAAGCAAAACAGGTAATTTTTTTCAGTGATTGCCTTTC
CATTATCTGAAGATGCTCTACCATAGAGTAGGGAGAAAATTTATCAATGA
ATAAATAAATTTTTGTTGTTTCTTGCCTGTGACCCATCCAAATACTCAAA
GTTTTAAGGTAATTTTTAACTTCTGTTTTGATAGAAGAGTTAAAGTATAA
GTGTATCTCAGTTGTTACACTTGAAACACAGGACATACTTTTCTTTTAAA
GGTTTTGTTTCTAAATAAGAGTGATATCGTTTGCTTACTCATCAATTTTA
ATTCACAAGCTTTTTCACATTGGATTGACTCGGATGTGAAGAGAGATTGA
TCAGAAAGAGGAAAGGAAAAATATTTTTTGCTTATATCAGCACAATATAA
CAATAGGCAGACACTATCCTGATATGAACATGAGTTTGATATGAAACGGG
AACACTTATGTAAAATGAAAACCTTTAAATGAATATAGCATACTAGGCGA
GACCAATTTAATGTGTTGTTCTACAGGCCCGACCGACCCTATTTTTGCCA
AAATCAAAAAAATAATAATATTGAATTTCCACTACAATATATTTTACACT
AAGATTTTATCATGATCTTCATCGAAGATAAAAAAAGTGAATTTTTGAAC
CAGATATTTTTTGGAAAACATTTTCGTTACCTTAACAAAGTACTTTCAGA
AGCAGCCGGCGGAGAGATTTTTTAGAAATATGTGTTCTTATCTTCTAGAA
GACCACATATCATGACCTTCAATTTTCTTATACAAACGATGTGTTCTGAT
TTCTAGGAAACCTTTATCGCACTATTTGTCTCCCTAAACTTATTACTACT
TTATGGTTGGATGTGTTCTAAAATCTAGGAAAAACATTTTGCCAAGATAT
ATTTGTAAGATATTTGTTTTTTCCACGAAAGATGTGTTCTGGACCTTTCT
AGGGTTACCAAGACAACAAGAACACGTTTGATGACCTTAATTATACCCCT
GTCTCTTCAGAACACATCAAATTTTTAGCTGATTGATTTTTGAAGATCTT
ATCAGAACAGATCGGAATTTCTAGCTGAAACATACTCTCAGAACACATCG
GAAAAAAAGATCGCCTCGCCGGCTGCTTTCGTACTTTTACCGACCGACCG
ACCCATATTTTGCTAACGATCTGCCCGTAGAACAACAAATTAAATTGGTC
TCGCCCTATCAAGCGTAATATTAGACTATGCTATAGTCTAAGACGAGTTT
CATCTAAGAGGAACAAACGTGAAGACGGGAATTTTTTACGGGAGTAGCTG
TTGTCTTAGACTATATCAATTCGGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTCAAGC
AAGTATATATCATATTTTTTTCAAGAAAGCTATAAAAGAGAGAAGAAGAG
GTAAAGCATTTTTCTCTTTTATTTTTATTTTGAAAGACTCATCTGCATCT
ACCAGGTTTATCTACAGTGTATGTGGTATATGTTTTGTTTAATTGATCTA
GGAAAATTTTACGAAGAGTGGTATCTTTCAAATAGCTTTTTTACAAATTA
ATGCATTTTCATAAAAGGCATAATTGTTGGTTTTGATTTTTTGTCTACAG
ATATAGTTTAGGCAAGCCAATATAATTTGTCGTTTTTTTACATACCGCAA
GCTTTAGGTAAATTTTAGGTTCGGTCGTGTTGTGCCTGTAAAACCTGGTA
AAACAACAAATCAAATTGGTCCCACCTTATAGTCTACCAAAACCAAGTCC
AAGACAGGAAAAATTCAATATAAATCATTGCAGGACTTTTTAGTGAAGCC
GCAATTAATAATTCAAGATGAAAAGGTGAAATTTCACTGTGAATTGTCAA
ATTGCAGCTTTTCACTGTGAATTCACTAAAAAGTCAAGGTGAATTTTATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCAAGATGGCCATTAAGAAAGACTTTTGTTTATTTATCTTCTTATGAACT
GCTATATGTCTGTATGTTAATAGTTGCTATTTTGCCCTTCTGTATTCAAT
ATGAGCATTTAATGTATATAAAAGAAGGCATTATTTACAATTATCATATA
ATTGAATCATATTGAATATTTTAAATTTTGTTTTTTTTTTATACTGTAAA
AGAAAGTAAAAAAGAAAGTCTTAGACACAATCCATATACCATGCAAAAAT
TCTCACTCTTTAAAAAAAAAAATTGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTAAAATTTTGAATAAATC
AATTCATTTTTACGTGGGATTTTATGGAATTGTCACTTGGATGATTTAAA
AGGATATTTGAGTAAAGAAATTTAAAATGTGGTTTTATTTTGACTAGGTA
TTTTTTGCAAAACATCCGGTTCAGTCAAAAACGCCTTCTCGGCCTCAGGT
CTAAAATTGAAAATTTGCACCACAGATTTTTTGGGGAATTTTTCCTTACA
AATACATTTCAATCATCACAGTGACCCTATATTTCAAATCTAANAGCTGT
TTTTGAACGAACCAGCTGCTTGCTAAAAATATAGTCAAAAAGAAACTTTT
TGTTCAGATATTTGAAGATGCTTGAGTACTGCTCTTTATCATAGAAGGTG
TCGTTGTTCAGATATCGTGGAGGGTTATTCATTCGGTCATAATGGAAAGT
GTTGATCAGCCACCGTGGAAAATGTTGTTTAGATATCGCAGAAAGTCTTG
TTTAGACACGGTGGAAGGTGTTGGTCTGATATCGTGAAAGGTGTTGGTTG
AANTATGATAAATTTTTAGTTTTTTACAAAATTCAAACAAAATTTGTGTT
TTCGCAGGATATGGTTGTAAAATTTTAGATGAAATTTGTAAACTATCGTG
AGATCGGGGTAACTTAATACATCAGTGGAGGCTAACATGCATAACCCTTA
AATTAGTGACCTGGCTGGTCATTAAAATACAAAGTTAAATCAAAATAAAA
AATTGTAGAGTAGAGGTGGGAGCGGAGCTGCGTAGTTCATTTGTTTTGAA
ATTTTGCTGTTTTGATTGGTCATTTGATGACTATGCAAGTTACCAGACTT
TACGGTATACAGTATCATAGGAAAAAATCAAAAAAAATTACCTTGACCTT
ACAGATGAATTGGCGGTGAAAAACTGTTAATCTTTCAATAATGACATGGT
GATTAGCTGAAATTTCACCGTAAATNTTGACAGAACTGGAAAAAGTCAAT
ATTTCAGTCTCAACTGACACTGATTCCTGCTACCATAAAAGAAACTACGA
AATCCAGTGAATATAAACCTTACCTTTATGCTACTTCAGGTGTCAGGCAT
CAAGTTGAATAAAATTTCCAAAAAATCAAAGTTAGAATTTGTTTGCCTTG
AGGAAAACAATCCCTTCTAACTAATATTGTCATAAAAGCTAAAGATGAAT
GCGTTTATGTAAGATCTTCAGCCTCCAAATTATCCTACAAGAACATTCTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCTTCTTCACCAGACCCA
GAACCATCATGCTCAAAGAAAACAACCATTTTTTGGATAAAGTTCACTTC
CTACTTGCATCCTTCCCTTCGATTTTGTGTTGTGTTTCTGGTTGTTTTGA
TTTTCTCTACCAAGTTCGTCTATAAATCTGCAGGGATTTTCCGCAAAATT
CACCGACCCTTCTCCAAGGTCGGTAAGGGCAAAGATAAAATCAAGAAAAG
CGCCAAATTGATATCGTCCGTAAACACGGACTATATCCGCCGCGAAACAT
ATTACGTTTTATAATATACAAACTATGATATATCATAATAACATATTATA
CGGACGATAGCATCGTCTAGCGTAATATCAACTCTAAATAAAAAAATATA
ATAGTTTGACCTTAAAACATGGCTAGTATTCTACCTAGCAGCCGTTTTAA
ATCAAAATTTAGTGGAATTTTAATGGTTTTTAAACAAAGGGTACATCTAT
GCCTAAACTTACTCGACCGAAATGGTTGCTATGGAGTCTGCCGCCATCAT
AAATGTAAATAATTTAAAATTATNTGGACTCAGCGTCATCAAAAATTATC
AAAAAGCAAAGTTTAGCCAGAAGTAGACTCTAGTCTAGCCCCCATCCTAC
CTTTAATTTTCAATGAACTTATTCTCAACAGGTATCACCACCACCTAAAC
AACGTATTGAATATCCAATGTTTATCTTCGATGAAGGATCTAATCCATCA
AACGTAGATTTCGATTTTGTGGACAATAGTATAACACAAGGTATTGCCAC
TGTTACACTGAATACAGCTTCAAATAGTGGACAGGAAAAAGACAAAAAGA
AACTTAAGAAATTATTGAAATTGAAACGGAAATCGAAATCGAAAGAAGGC
GTTGGAGAGGAAGGAACTGAAGAGGAAACAGTTGAGGAATATGTCTTGGT
AGATTGATTCTGATTGGCTCGTCAAGTTTGCTCGACCAATAGAATCGAAG
AATTGAATAATCACCATAACTGTCTATAGTAGGTTAGCTCTGATTGGCTT
CTCTTCTCGAGTTTGCTCGACCAATAAAATTGAAGGGTGCATCAATCGAC
ATTATGTCTGATCACCCGTAGATTAGTCCCGATTGTTTGCTCAAGTTGGC
TCGACCAATAGCATGAAAGGTTACTTCAATCGGGCTAAATTGACCAACTG
GATGATTTGATCGGTACATTCCGAAACCATTCGTTTCAAAAAATCGATTT
GGAACGTATAGACTTGATGAGTCGAAAATAACGAAACCGTTATCGGCTTT
TCGAATTACAAAATAGTGAATATTTCGATTGTCGCTTTGTCCTTCTTGGT
TATTCCTTGCTTGGAAGATTTTGGTCTTTTCAAGAAAAAAATTGAATATG
GGTATGGAGGATATAACATTTTTTGAAATTAGCCCCCGGACATTGTGAAT
TTTGACCCCCTGAACATTAACCCTCAAACCGAGCAAAATTACTCCCTAAC
AGAGCAAGTTTACCCCAGGACAAGGAAAATTTTGTAGATTTTTCACTACC
CCCCCCCCATTTTTAGACAAAAAAAATTTGATTGTTTTATTCAGAACCCT
ACTATGAATTTAGTGGGGGGCGTACGGGAAAGCGGTTTTCCGCGGTTTTC
CGCGGTTTGTCGGTTTATCGGTGAAGAGCTCAAAATATGTCGGTTTATAT
CGGTGAAGGGAAAATATCACGGTGTCGGTGATGGAGCTGTTTTTGTTCGG
TTTATCGGTGAAAAAATAAAAAAATAGCGGTTTTTCGGTGATTATCACAT
ACGTCGGTTTCTGAGAATTAATTACCCTTGTGCATAAATAATCAAAAATC
AAGTCAAGAAGTAACATTTTCTTTGCTCGCTTCGCTCGCAGAAAACACCA
TTTTCAGCAATAGCCCATTAGTAAAAGCTCTGATGGAAAAAATTGTTTAC
ATACAGTAGCGTGGTGGCAGGGGGGCAACTTCTCCCTCCCAGTGGAGACT
TTTTGAAGGGGCGCCAAAAGAAGGAAGCCTTTCGTATTTGCTCTTTAGTA
TGTAACTTTAGCGCCCCTTTCCCTTTAAGGCGCCCTTTTACTAAACTTTT
GCTCAAATTCAAGCTCTATTTTGGAAAAAAAATTTCCCTCGCTTCGCTCG
CGTCAAACAGAGTCAACTTTTTGCATTGAATCTTTTAGAATAGGCATAAC
CAATAATAGTTCCTCAAGGATCGTATGTGGAATTTTTCATAAGATTTGTC
ATATATTATATGACTGATTTTAAAGTTTTTATAATTCTATAAAGTTATTA
AAATAATTTAACGTGGTTTTATTTTGTTCCTTTTCTACTCGAAAATTTTG
TGATCGCTTCGCTCGCATTTCAGTATCATTACATATACTCTAATTGACTT
TACGCAATTCATCTCGATAAACAATGTCGCAAATTTTTCTTGCTCGCTTC
GCTTGCATTTCCTAAATGTTTTTGAAATGACCAAAAGTTCAAGTTAAACA
AATTTCGGTATACTAATGCGACCAAAAAGGGGGCGCCAGAATATGCCTAG
GGGGCGCCTTCAGCCAAAATTCTACTTTTGCCTCCCCACCCTTGACCTAC
CCACCACTCTACTGTGTATATATGACCAGCCGAAAATAGAATAGTCCAGT
CCAGTAATACTTTTAGGGCCTCAAAAGATGCTTTTTCCAAACACGATTTT
AGAGATTATAATTTTTGAGTTGAAAACCGTGGACAAGTAACTTGCACAAA
TCTCGGCACAAATAAGTCCATCAATTTTTTTCTCGCTCACTTCGCTCGCA
TGGAGGGTTGAGAAAATACAAAAGTTTTCTCCATCGAGGGCAACCAACAT
AATAAATGCAGAAACCCGTATTGAATAGTATTGATTCACTAAGCCAGCTT
ATTTTCGCAAACCATGGTTGCGCCTCCTGTTACCTCCTAAACAGAAATTT
GAATTCCTGCCAGCATGCAATGGAGATTATGGGTTAGTTTTGCTACAAAA
ATTTCGGGGATACATGCGGTCTACTTTATTAAGAGCTACAGACCTTTTTT
GAAGCAAGAGTAAAAAGTCGGTGTCGGTAGAGAGGATAAATTTTGTCGGT
TTATCGGTGAAAGAGCTATTTTTGCGCGGTTTTTCGGTTTTTGGAAGTCC
CGTACGCCCCCCCCCCAATTTACAAGTTAAATATCCAAGTTATCTGACTA
TTTATTCAAATTGTTTAAGAATTTGGTTAGATATGGATTTGGTTATTGTT
TGAAGAATTTTAGCCTAGCCTAGATGGTGACCAACGCTGTTTCAACATTA
ATGTAACGTTGTATGCACAAATTTTATATTTGATAAAAGTAGAGTATAGA
GATATTTTTATTTTTTATGAACTTTTATACATTTTAATTCCATTTTAATG
TTCAGATATTTGACGACTAAAGGTATCTATTAATGATACAGCCTTCCCAA
GATAAGTCTTTTTTATAAGAATGTACTTTATAAGAATATTCATGTTGAAT
TTGGCAAAAAAATTAAGAACATGTTAAAAGGCCCAAAGAATAATCCGGCA
ACTGATCCTAAGATTGCCACTGTTAGAGATTGGTAATACTGTAAATTGGC
AATTATCACCCACTAAGGCTTGATAGCTTTACCAAAATGTAATTTTATGC
TTCAGGCTTGTATTACATATTAAATTTAGGTTAGATTTTGAACCTAAGCT
AAGAATACCGTAAGAATATTTTAGGATGATTTTCCCCAGAAAAGTTAAGA
ATAACCGTTCTCTACATATATGACAAAAGCGTTTACGTTAGCCAGCTTCT
TGATGGTCCTAAGACTACTTGAGTCTGTGAAGTTTGAAATGTGTCTTAAC
CTTTAGACACCGCTGTTTTTAAAAACAGCGCGCGCTGCTGCCGCTGTTTT
TTTCATGAAAATGGAGGTTTCGCGGAAAATGTCATAAAATCTGAACCGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036864XLOC_036864Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058513-exon-scaffold_311-1575043694:178396..178417TCONS_00058513-exon-scaffold_311-1575043694:178396..178417Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1575043694:176988..177121TCONS_00058513-exon-scaffold_311-1575043694:176988..177121Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1575043694:175828..175898TCONS_00058513-exon-scaffold_311-1575043694:175828..175898Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1575043694:175245..175465TCONS_00058513-exon-scaffold_311-1575043694:175245..175465Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1575043694:174083..174161TCONS_00058513-exon-scaffold_311-1575043694:174083..174161Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1575043694:173466..173542TCONS_00058513-exon-scaffold_311-1575043694:173466..173542Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1575043694:172694..172813TCONS_00058513-exon-scaffold_311-1575043694:172694..172813Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1575043694:163918..167186TCONS_00058513-exon-scaffold_311-1575043694:163918..167186Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1510915933:178396..178417TCONS_00058513-exon-scaffold_311-1510915933:178396..178417Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1510915933:176988..177121TCONS_00058513-exon-scaffold_311-1510915933:176988..177121Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1510915933:175828..175898TCONS_00058513-exon-scaffold_311-1510915933:175828..175898Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1510915933:175245..175465TCONS_00058513-exon-scaffold_311-1510915933:175245..175465Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1510915933:174083..174161TCONS_00058513-exon-scaffold_311-1510915933:174083..174161Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1510915933:173466..173542TCONS_00058513-exon-scaffold_311-1510915933:173466..173542Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1510915933:172694..172813TCONS_00058513-exon-scaffold_311-1510915933:172694..172813Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1510915933:163918..167186TCONS_00058513-exon-scaffold_311-1510915933:163918..167186Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1491911889:178396..178417TCONS_00058513-exon-scaffold_311-1491911889:178396..178417Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1491911889:176988..177121TCONS_00058513-exon-scaffold_311-1491911889:176988..177121Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1491911889:175828..175898TCONS_00058513-exon-scaffold_311-1491911889:175828..175898Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1491911889:175245..175465TCONS_00058513-exon-scaffold_311-1491911889:175245..175465Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1491911889:174083..174161TCONS_00058513-exon-scaffold_311-1491911889:174083..174161Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1491911889:173466..173542TCONS_00058513-exon-scaffold_311-1491911889:173466..173542Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1491911889:172694..172813TCONS_00058513-exon-scaffold_311-1491911889:172694..172813Clytia hemisphaericaexon
TCONS_00058513-exon-scaffold_311-1491911889:163918..167186TCONS_00058513-exon-scaffold_311-1491911889:163918..167186Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:163918..178417 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.607403	0.279981	0	0.000191872	3.31035e-05	1.12369e-05	2.28067e-08	1.34328	0.439256	0.940027	0.404587	3.18949	0.851837	0.0110995	0.692295	0.293822	0.811588	4.70212	2.25241	1.22973e-05	0.0390888	0.022452	0.045168	0.835019	3.65529e-10	1.93876	0.00302511	0.161762	1.65824e-05
Blast
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BLAST of TCONS_00058513 vs. Swiss-Prot (Human)
Match: ATG4D (Cysteine protease ATG4D OS=Homo sapiens GN=ATG4D PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.792e-67
Identity = 118/260 (45.38%), Postives = 158/260 (60.77%), Query Frame = 2 
Query:    2 KNKNQQKIVRFFNDEDSDHSPFSLHELVRVGEASGKKPGDWYGPNSVAHTISHTVNNTSHPTLETLRVYVAQDCTVYKEDVIKACTRCKNCFNPACQDKFWRSLLXACTHCKNCFNPACQDKFWRSLLILVPVRLGSESLNPIYIPCLKALLALDCCVGIIGGRPKHSLYFVGFQGDKLIHLDPHYLQDKVDMSTRDFPVDSFHCQYPKKMSFEKMDPSCAIGFYCRTRADFENFCQEAKQVSPPPKQRIEYPMFIFDEG 781
            + +  ++IV +F D     +PF LH LV +G++SGKK GDWYGP+ VAH +   V + S  T   L VYV+QDCTVYK DV +   R     +P  +                          W+S++ILVPVRLG E+LNP+Y+PC+K LL  + C+GI+GG+P+HSLYF+G+Q D L++LDPHY Q  VD+S  DFP++SFHC  P+KM+F KMDPSC +GFY   R +FE  C E  +V         YPMF   EG
Sbjct:  208 QERRHRQIVSWFADHP--RAPFGLHRLVELGQSSGKKAGDWYGPSLVAHILRKAVESCSDVT--RLVVYVSQDCTVYKADVARLVARP----DPTAE--------------------------WKSVVILVPVRLGGETLNPVYVPCVKELLRCELCLGIMGGKPRHSLYFIGYQDDFLLYLDPHYCQPTVDVSQADFPLESFHCTSPRKMAFAKMDPSCTVGFYAGDRKEFETLCSELTRVLSSSSATERYPMFTLAEG 433
The following BLAST results are available for this feature:
BLAST of TCONS_00058513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATG4D1.792e-6745.38Cysteine protease ATG4D OS=Homo sapiens GN=ATG4D P... [more]
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