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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058493 ID=TCONS_00058493|Name=TCONS_00058493|organism=Clytia hemisphaerica|type=transcript|length=1014bp
tgtcactttcgatttcatttACGGACCTTGTGGACCAATAGATTAGCTCA
TTTTTGACTAATCAGAGCCGTGTATTTTAAGGGCATTGGGCACTACTTTC
GATATTTCACTCCTGTTCAGGGAAAAAAACTGGAAGAAGGAAGCACCACA
CTGACACGAAAAAAGGCAGCAAAGTATTTAACGTTGAATGTTTTTTAGCA
AACATGACAGAGGTATCAACTTCATCAATAAGTTCTGCAGAGGTTCAAAT
TTTAAATAGGTTTCCAGAGGAGTCGTTTAATGAATTTATTCAACTTGTAT
TTGATTTTCTGTTAAATCCGAAAGACGCATCCAAACTTTTGGAtgatttg
catatattttgTGAGAATGCTGGGGCATCAGCTGGAGCTGTTAAGAATCT
AGTAAAATTACTGATCTCATATTTGAGggaaaaactgaagaaaaatgttt
caagtaACTCTATCAATGATCAACTTGAAAAGCTAGgCTTATCTGCTTCT
AAATTGGAGATTATCCTTGAGAAATGGAAGCAATATAATAATGTTCTCAC
ACGATCAATGGCAAATCAAGTTTTCAATATCAATCAACTTGTGGATATGG
ATTGGAAATTTGGAGTAACTGCCGCAACATCAGATGAAGGTCAAGTCGGA
CACTCTTTCATTCAATTAAAACTTGTGATTGACAaaggaaacaaagaaaa
tgaaaacgtttGTTTAGAACTGACTCTACCACAATTTTATGAATTTCTCC
ATGAAATGcaaaaggcaaaaaatagttTAGAGTTACTTGGTTAAAAGGTA
AGTAATTTATATGTAGATAGAGTTATAATACTATGttacttttgtatttt
tcacaatcattatttttttcagtggaACCCAGCTTAGCAGTTTTACAATT
TTATcaacagtttttcttttttgatggaAATAAGAATACCTTTCTCATTA
CCATACCAGCTTCTTTGATTAGTACTGCAACTTAGTTACTGTGTGGCCTG
gtttattttgacat Run BLAST on NCBI protein sequence of TCONS_00058493-protein >TCONS_00058493-protein ID=TCONS_00058493-protein|Name=TCONS_00058493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MTEVSTSSISSAEVQILNRFPEESFNEFIQLVFDFLLNPKDASKLLDDLH
IFCENAGASAGAVKNLVKLLISYLREKLKKNVSSNSINDQLEKLGLSASK
LEIILEKWKQYNNVLTRSMANQVFNINQLVDMDWKFGVTAATSDEGQVGH
SFIQLKLVIDKGNKENENVCLELTLPQFYEFLHEMQKAKNSLELLG Run BLAST on NCBI transcript from alignment at scaffold_311:1255224..1263407+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058493 ID=TCONS_00058493|Name=TCONS_00058493|organism=Clytia hemisphaerica|type=transcript|length=8184bp|location=Sequence derived from alignment at scaffold_311:1255224..1263407+ (Clytia hemisphaerica)
tgtcactttcgatttcatttACGGACCTTGTGGACCAATAGATTAGCTCA
TTTTTGACTAATCAGAGCCGTGTATTTTAAGGGCATTGGGCACTACTTTC
GATATTTCACTCCTGTTCAGGGAAAAAAACTGGAAGAAGGAAGCACCACA
CTGACACGAAAAAAGGCAGCAAAGTATTTAACGTTGAATGTTTTTTAGCA
AACATGACAGAGGTATCAACTTCATCAATAAGTTCTGCAGAGGTTCAAAT
TTTAAATAGGTTTCCAGAGGAGTCGTTTAATGAATTTATTCAACTTGTAT
TTGATTTTCTGTTAAATCCGAAAGACGCATCCAAACTTTTGGAtgatttg
catatattttgTGAGAATGCTGGGGCATCAGCTGGAGCTGTTAAGAATCT
AGTAAAATTACTGATCTCATATTTGAGggaaaaactgaagaaaaatgttt
caagtaACTCTATCAATGATCAACTTGAAAAGCTAGGTAAGATTTTGTAT
CATCATTAGCGGCAATcgcaaatattttcatttcgcgtcctcgttgggtc
taaaaagtgagtcggtcggtcgtaaaaaaTTTCGGGTTTCTATTTTTCCA
TCCATGTTTGGagtgcattcttggaggaaaATGCCatccagccagcagcc
aaaacaaccgcgtgtaatggcagttagtcacactaggaaatcaagctttc
aaaaaaaaacaacaacatcagtcatctacaggatgtatttgcaaaacaag
gatgagagttacctgaatcaagtttgcaagagAATTAtaataattaaaat
ttgaaagtttgaaacaaaatgaaacgtgcagcagccaaaatcacccaatc
aaaatttgtcattcaattcccaagacagcgcttcgatttttaaggccttg
tttatataccctaaagtaaaaacaattccgcacatgtaaatgggtcagtg
tttgaggtccggcaaaatttttgggaaatagcctatccggtaGTGCGCGT
ATCTAGGTGGATTCCGTCTcccctgtagatctttttcttgggaagttgat
cttcaaattagttctcaagaTTGGCTAGGCTCAAATTTTTTATCTATGAC
TCAAACTTTagcagtgcgtcacaaacagccacataaacaaaactcaacat
tctcacaaaagttgtctttttgatttccaaaacatttgtctaaagcgttc
acttccacaataatttatgtaattgcaatttcggtcagtccacagtcggc
ttcaacatatacacgtgtttttatttacgtgaccgaagtgcctactaaaa
caatccgggggtaagtggcaaagaaacacagcagattattcgtaaagtaa
agaaatatcttttggcattgacaatcaaatataatatattatattatatt
tccttaattaaaaaatcaaaaattcatttttcatttgcacaaaaataaaa
ataaaagaataatgaattaatattacatactaagacgcccccgtctttta
ctctcttttaatttccgatctcggaacgtgcaatAATACGCCCGTctgcc
caatatccacccaatcagcttaaattcactttaattgtcctttgactttc
aaaaaatagtacagtatttaaaaattatgaattttaataattacaaaaaa
caaaaagtttgatacttcattagtctgcattagtgaaatattcaataaat
tcctaatttcaattttcagtgggcgtttttctagggcttcgtttatcacg
caatttttgcgtcacgcAAACTTTCTCAGCCggtcgtaataattatgcat
tgccaaatttggttctccattgtcaagtcaggatcgatggtgacaaaaga
aatgattttgtcggttttatgcatatattaatttgcaagGTATTTTATTT
GCTGCGcaagcgcacttttcgtagactagtcggaatactttcttttactc
gctggattgatggtaacttttcatcttcgttatttttaaaatgaagcata
accgaaaaaaaacaaaacttcaggaagttgcgtatttccagtgagtaaac
gattctgacaattaacaaaattgatgatgattattttttttcggtcaggc
aaatgtctcgtattgggggttctagtcttgacccctaagcctacgcaaga
ttgaagcgtttgggtaaacaagacaaaactccaaaaaagctggtgttttt
gaagcgcttccgtgcgatcgaaatatcgctgtttgtgacgcactgtttag
gcaatttctcatagtttttgagaatgttaatttcattaaaaagcgccagg
ttattttttcatgaatccctttagatgttttgccagggggggggggtctt
gcagttactccttgacactatgtggagtaactgcaattttggacattttc
tacagacaccaccacccttgcagttgtTCCaaagtgtactaactgatttt
accctcaaaataggtgtataccacccccaaaaatggcaattttttcactg
aattcctcatttttgataccattttactgggtacgtcttattaacgaccg
ttcaagagttaaatatctcaattatNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaatcctactttgacaa
taatttgcgctgtaccgcaaaatttctaagtccaagtgttgtgattagct
ttagactgtccaatatttcttgtccagaagatttaaaCTGCATTGTTTGC
AGTATCTCATAAATTATCACCCTAGTAATGTTGCTTAGTTATTTAAGAAT
AAACAAGTAAGACTGTTAGTGTACACTATTATAgagatattggacagtct
aaaagCTAATCAtgacacttggacttagaaattttgcggtaaagcgcaaa
ttattgtcaaagtaggatttctgaatgagtctaaaaagtttttgaatagg
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcc
actggtggagtaactgttttcccaaattttggtttatataccaccacggt
agtaattgtcatagtgtttatataataactgcatgaccccccccctggtt
ttgcagcacatttttttgcttgagagtcaggtaaacgatatagcactttc
ccagcattaatctttgatacgcatttcggtggaacgctagtgtgactaac
tgaatgggtggtttaaaattatggactttgaacactgtgacctccgaccc
aaaaatggcgcatgtaatgataaacaaagtcaaaattctGTGAATGCACT
AGAAattggcaataataaaatttttgaacgaaggaaagttaactgacaga
aaaagtccgacaaatttatcgactcaccgactcaattctactcaattttc
gagagtcggtcgggcgacacgaaacaaagatatttgtgattgccttatta
ttattattggcTGTTATgaaattccttataaaaagaagtTCTTCTACAAA
AAGACGCTTAAAAAAACGACATGGAAAAAGTTGTTCAAAAttaaatcatt
ttattttaacaatttCATAAACTACGTCACAACCGCGGAGCGCTGacttt
tttatcactttttctCAGTCATTTCCATTTGGTttccgtaataaaaagaa
agacgtTAATTGTGAACTTAAAACATGCTTAAAGTCAAGGTACTTCTACT
AACTGTCTTTATGTGGGAAAGTTGCAAGATCACCAAAGATCATCTCAAAA
AAAAGATCACCCAGCTTATTTctagaaataagaatttttttggccCTGGT
TTCACAATGAGGCCCTGGTACCAACAATACGTCTACATTAGCACGACAAA
ATAGCAAgccatttattttcaatttccgaTAGATTTGATCTctgccaaat
tttgaaaatccatttttcaagcttttttcACTGAACAACCAACCAACTCA
TATTTTTTACCCAAAAATGATGCCAACACCTGCCAGCACAAGTTTTTTGT
GATCGCAACCTTAACAAAATTTATGCTAgaagtaattagttattcaagaG
ACTGTTGTCAGTATagccctaactcttcatacaaaatttaTGGGAAAGGT
ATATTAGATTTTGTACCAAATGCTGCACACAAGCACTTAGGCTAAAGTCC
TAGAATAGCAGGACAAAAATTAGTCTTTTGAAGTTTTCATTAAATTTCCA
CGTATATATAAGATCTTTcgaattcagtatgtgaatagagcagtaaaaaa
tgcaacttttctatgtttccttttttttgcaaaagtaccaGTGATGAAAA
GAAAGggtaaattaaataattgaatataataaataataaaatgataattg
aatactgaTGATCCACAGCACTATGGCGAAGCTAGAATTGCTTTGTgtac
tctttgcttgagaaaataaaatgattgacagattaattttttcacccgtG
AGGGAGTTTGCAGGTGTTCTGGGGGCATGGCTTTTTTCAACTTGCCCAAA
TTCTTGAACTGTGGCAGGTTGTTACATCTGACAAATTAATGCTTGTTTTA
TACTTTTAtttccattgaagaatcatactCTGGCTTTTATTTTACTAAGT
GCCCTTTATAGTTTTAgagtatatttgttttgttctcCCAAACCACTATT
GACAAACTTTCTCAGGCAGTCTGAACCATATTTTTCTAGATCTTTACCTT
ATCACAATATCACTTTGACTCCAAAAATTTGCTTTTAGTAAATGACTCCA
AAAAGAATTTAAGGCTTCAATGGAAAAAAGATTGAGAAcaagttgagaat
attttaaggctttggggacctTAAACCATCTATTTTATTAGGAAGACAGA
CAATACTCactaaatgttgaaaataaaaacatgttaagaactttttagac
ttaaaactaaaattaagaacataattaattgttaaataaaattgtttttt
attaaggCTTATCTGCTTCTAAATTGGAGATTATCCTTGAGAAATGGAAG
CAATATAATAATGTTCTCACACGATCAATGGCAAATCAAGTTTTCAATAT
CAATCAACTTGTGGATATGGATTGGAAATTTGGAGTAACTGCCGCAACAT
CAGATGAAGGTCAAGTCGGACACTCTTTCATTCAATTAAAACTTGTGATT
GACAaaggaaacaaagaaaatgaaaacgtttGTTTAGAACTGACTCTACC
ACAATTTTATGAATTTCTCCATGAAATGcaaaaggcaaaaaatagttTAG
AGTTACTTGGTTAAAAGGTAAGTAATTTATATGTAGATAGAGTTATAATA
CTATGttacttttgtatttttcacaatcattatttttttcagtggaACCC
AGCTTAGCAGTTTTACAATTTTATcaacagtttttcttttttgatggaAA
TAAGAATACCTTTCTCATTACCATACCAGCTTCTTTGATTAGTACTGCAA
CTTAGTTACTGTGTGGCCTGgtttattttgacat Coding sequence (CDS) from alignment at scaffold_311:1255224..1263407+ >TCONS_00058493 ID=TCONS_00058493|Name=TCONS_00058493|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_311:1255224..1263407+ (Clytia hemisphaerica)
ATGACAGAGGTATCAACTTCATCAATAAGTTCTGCAGAGGTTCAAATTTT
AAATAGGTTTCCAGAGGAGTCGTTTAATGAATTTATTCAACTTGTATTTG
ATTTTCTGTTAAATCCGAAAGACGCATCCAAACTTTTGGAtgatttgcat
atattttgTGAGAATGCTGGGGCATCAGCTGGAGCTGTTAAGAATCTAGT
AAAATTACTGATCTCATATTTGAGggaaaaactgaagaaaaatgtttcaa
gtaACTCTATCAATGATCAACTTGAAAAGCTAGgCTTATCTGCTTCTAAA
TTGGAGATTATCCTTGAGAAATGGAAGCAATATAATAATGTTCTCACACG
ATCAATGGCAAATCAAGTTTTCAATATCAATCAACTTGTGGATATGGATT
GGAAATTTGGAGTAACTGCCGCAACATCAGATGAAGGTCAAGTCGGACAC
TCTTTCATTCAATTAAAACTTGTGATTGACAaaggaaacaaagaaaatga
aaacgtttGTTTAGAACTGACTCTACCACAATTTTATGAATTTCTCCATG
AAATGcaaaaggcaaaaaatagttTAGAGTTACTTGGTTAAATGACAGAG
GTATCAACTTCATCAATAAGTTCTGCAGAGGTTCAAATTTTAAATAGGTT
TCCAGAGGAGTCGTTTAATGAATTTATTCAACTTGTATTTGATTTTCTGT
TAAATCCGAAAGACGCATCCAAACTTTTGGAtgatttgcatatattttgT
GAGAATGCTGGGGCATCAGCTGGAGCTGTTAAGAATCTAGTAAAATTACT
GATCTCATATTTGAGggaaaaactgaagaaaaatgtttcaagtaACTCTA
TCAATGATCAACTTGAAAAGCTAGgCTTATCTGCTTCTAAATTGGAGATT
ATCCTTGAGAAATGGAAGCAATATAATAATGTTCTCACACGATCAATGGC
AAATCAAGTTTTCAATATCAATCAACTTGTGGATATGGATTGGAAATTTG
GAGTAACTGCCGCAACATCAGATGAAGGTCAAGTCGGACACTCTTTCATT
CAATTAAAACTTGTGATTGACAaaggaaacaaagaaaatgaaaacgtttG
TTTAGAACTGACTCTACCACAATTTTATGAATTTCTCCATGAAATGcaaa
aggcaaaaaatagttTAGAGTTACTTGGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058493-exon-scaffold_311-1491911889:1255224..1255709 | TCONS_00058493-exon-scaffold_311-1491911889:1255224..1255709 | Clytia hemisphaerica | exon |
| TCONS_00058493-exon-scaffold_311-1510915933:1255224..1255709 | TCONS_00058493-exon-scaffold_311-1510915933:1255224..1255709 | Clytia hemisphaerica | exon |
| TCONS_00058493-exon-scaffold_311-1575043694:1255224..1255709 | TCONS_00058493-exon-scaffold_311-1575043694:1255224..1255709 | Clytia hemisphaerica | exon |
| TCONS_00058493-exon-scaffold_311-1491911889:1262880..1263407 | TCONS_00058493-exon-scaffold_311-1491911889:1262880..1263407 | Clytia hemisphaerica | exon |
| TCONS_00058493-exon-scaffold_311-1510915933:1262880..1263407 | TCONS_00058493-exon-scaffold_311-1510915933:1262880..1263407 | Clytia hemisphaerica | exon |
| TCONS_00058493-exon-scaffold_311-1575043694:1262880..1263407 | TCONS_00058493-exon-scaffold_311-1575043694:1262880..1263407 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:1255224..1263407 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017920 | COMM |
Blast
BLAST of TCONS_00058493 vs. Swiss-Prot (Human)
Match: COMD7 (COMM domain-containing protein 7 OS=Homo sapiens GN=COMMD7 PE=1 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 1.118e-41 Identity = 77/192 (40.10%), Postives = 112/192 (58.33%), Query Frame = 3
Query: 207 TEVSTSSISSAEVQILNRFPEESFNEFIQLVFDFLLNPKDASKLLDDLHIFCENAGASAGAVKNLVKLLISYLREKLKKNVSSNSINDQLEKLGLSASKLEIILEKWKQYNNVLTRSMANQVFNINQLVDMDWKFGVTAATSDEGQVGHSFIQLKLVIDKGNKENENVCLELTLPQFYEFLHEMQKAKNSLE 782
TE ++Q LN+ + F+ +++F FL PK+ + L L F S G+++++VK L+ LKK++++ + LGLS K EKWKQ L R Q INQL+DM+WKFGVT+ +S+ +VG F+QLKLV+ KGN + ENV +ELTLPQFY FLHEM++ + S+E
Sbjct: 7 TEDPVPEAVGGDMQQLNQLGAQQFSALTEVLFHFLTEPKEVERFLAQLSEFATTNQISLGSLRSIVKSLLLVPNGALKKSLTAKQVQADFITLGLSEEKATYFSEKWKQNAPTLARWAIGQTLMINQLIDMEWKFGVTSGSSELEKVGSIFLQLKLVVKKGN-QTENVYIELTLPQFYSFLHEMERVRTSME 197
The following BLAST results are available for this feature:
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