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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058472 ID=TCONS_00058472|Name=TCONS_00058472|organism=Clytia hemisphaerica|type=transcript|length=3799bpRun BLAST on NCBI protein sequence of TCONS_00058472-protein >TCONS_00058472-protein ID=TCONS_00058472-protein|Name=TCONS_00058472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp MPQTEPIKAKGNSKDKNENGSTSSSDLMSSILSHMERSNRENLFSASSEARun BLAST on NCBI transcript from alignment at scaffold_311:993266..1008770+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058472 ID=TCONS_00058472|Name=TCONS_00058472|organism=Clytia hemisphaerica|type=transcript|length=15505bp|location=Sequence derived from alignment at scaffold_311:993266..1008770+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_311:993266..1008770+ >TCONS_00058472 ID=TCONS_00058472|Name=TCONS_00058472|organism=Clytia hemisphaerica|type=CDS|length=18282bp|location=Sequence derived from alignment at scaffold_311:993266..1008770+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058472 vs. Swiss-Prot (Human)
Match: NEB1 (Neurabin-1 OS=Homo sapiens GN=PPP1R9A PE=1 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 3.024e-37 Identity = 82/127 (64.57%), Postives = 104/127 (81.89%), Query Frame = 3
Query: 2880 VVYTYGPIEYDRANADIDPLTSSAEWELEKRVDSMDIFSVDLHKDEKXXXXXXXXXXXXTQKGFEKLGIFVKTLTEGGASQKDGRIQVNDQILEVNGVSLVGVTQYFAAQTLKGANGIVRFLMGREK 3260
V TY +YDR N ++DP+ +SAE+ELEKRV+ +++F V+L KDE GLG+SIIG+GVG G EKLGIFVKT+TEGGA+Q+DGRIQVNDQI+EV+G+SLVGVTQ FAA L+ G VRF++GREK
Sbjct: 466 VFNTYSNEDYDRRNDEVDPVAASAEYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK 592 The following BLAST results are available for this feature:
BLAST of TCONS_00058472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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