TCONS_00058458 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058458
Unique Name	TCONS_00058458
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	492

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_311:629650..636834+

transcript sequence

>TCONS_00058458 ID=TCONS_00058458|Name=TCONS_00058458|organism=Clytia hemisphaerica|type=transcript|length=492bp
AGGACCTCCTGGACAAGATGGCGAATGCTTAAAGAGTTGGAAAGAATGTT
CTTGGTATGATATCAAGGATGCGAGAGTCAGCGGAACGATCGTGACATGC
GCCTTCAAGAAAAAACGCTCATTTACTCAACTCAAAGTAACTGTTTCAAC
AAATGTTCATGTACCTCATTTATCCGGAAGTCGTTGGTATGTGACATTTC
GATAACCAAATGTGCAGGCCAGTATCGATTGCTACCTATGTTGACCAAAC
AAGTGGATATACTCCATTCCACATAACAGGTATTTGTAAGATTAAACGAT
CCGGTATTGTTAGTGTCGCCCTTAAAGTGGAAAATACATACAATGGAAAA
AATGCATACACAGGACATGGTGGTTCAACAAGTATTTTTATTGAAGAAAT
GAACATGATCTAATCTTAGTCAAATTatattttaacagatttttagatca
ttgttttctttattgATATCAATCAgctatttttgttgaaat

Run BLAST on NCBI

transcript from alignment at scaffold_311:629650..636834+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058458 ID=TCONS_00058458|Name=TCONS_00058458|organism=Clytia hemisphaerica|type=transcript|length=7185bp|location=Sequence derived from alignment at scaffold_311:629650..636834+ (Clytia hemisphaerica)
AGGACCTCCTGGACAAGATGGCGAATGCTTAAAGAGTTGGAAAGAATGTT
CTTGGTATGATATCAAGGATGCGAGAGTCAGCGGAACGATCGTGGTAAGA
TCACATACTCTATAAAATCGTCAAAAAAGTTTAGCCTTtggaaattcttt
atttttttggttttaagcCTCAAAGCATAACGCTAAGCATAACCGAGTGC
ATATCCAGGTGAAATTTACTGACCGAAATttgggtaactctcggacgtga
attttatacacgattaacccccccccccccgacctATATCAGAGGGTATG
CGTATGCGTGCAGCCTAGGCCTGATCCCTTCATTAAaacttcaaagtttt
tttttctttattttctaacGAAACGACAATTTTTGccgtttttattttca
aaaaatattttttgtaaataaagtAATTGAATTTCGGTTGCAAACTGTGA
AGTTAAGATAGTAGCAATATAATTCCACTGGTTTTATTTACTATGCTTAC
CTTTTCGGCCTTTTtcacaccggcccttattggcgttatttttgggctcg
tggcgtaataagggccggtgtaaaaagggcaaagattttacaattttaac
ctaaaagcggcgttaatttttattctcaatttaaaggatttcaGGTATGA
TTCGaaagacgaaaattatccattgttggacctaccccagtggggtggag
gtcctataaattaacccatgttcgttcgttagtgtgttagttaccagctt
ttctcgagattggctcattaattttttctgatttttggcacaaaggtgca
tgaccatactcttaggtgccaaataaacgggggggttcgaataaacgggg
gggttcgaataaacgggggggttggaaaattttNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaggaatcttttga
tttttggtacaaaggtgcaaaatggtggtggccaaaatgtgacggagcct
gattttcgaaaaaaaaatttttgggccaatttgggcctaaaaacggctaa
aaaacgggtttttttagactttgtgaaaaattgggtcattaattttttct
gatttttgtatgaaagtagggtacaatcatagttaaaggatggctcaagc
agatttttgcaaaaaaatgtttttggctcaaaaatcgcatttttatctat
aagaaccacttttaataagaatacatcaatgttctttgccatgttattat
tattatttttattagtttttttacgatgaaaatgtcgcggtggagggtaa
tgatttgagttttctgtaaacacttattatttttttggctgaaaaatgaa
tctttatctataagaatcactatttatgagcatagaTCAATGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaggaatcttttga
tttttggtacaaaggtgcaaaatggtggtggccaaaatgtgacggagccc
gattttcgaaaaaaaaatttttgggccaatttgggcctaAAAACgggtca
agttgaacatttacaagaatttttgtcattggattggtcgttaactattc
aaacaaaaacttttattatatttttctaaagaacgcatcatctctattgt
tttgaataaccaattatgtgagcatcttgtaaaaacttcaatacaactgc
taaaaacggctaaaaaacgggtttttttagactttgtgaaaaattgggtc
attaattttttctgatttttgtatgaaagtagggtaccatcatgggtaaa
agatggctctcaagcagatttttgcaaaaaaattttgttggctcaaaaaa
tgcatgtttatctataagaatcactattaataagcatacatcaatgttct
tagtcaaattactcaatttttttatgagatagatgttttttttgctcatg
agggtttacttttagagagtatgtgtgtttaaacatgaaattttggttgc
ttagcgtgtttttatagaaaaactggccgaattcgatatttttttataag
cacattatcaatcacttaggtattagcttttcttgagatcagctctttca
ttctttatgattgtttgcacaaagatgcataactttaaacccttaaatgt
gacggagcccgattttcgaaaaaaaatgtttttgggcaaatttgggccaa
aaaacggctaaaaaaagggttttttgggcTTTGTGAaacattggatcatt
gttttttttctgattttttacatgaaagtaggtaaaagatggctcgagca
gatttttgttaaaaaaagaatttttcagctaaaaaaacgcatctttattt
ataagaatcgctattaataagcatacaacaatgttcttagccaaattact
caattttttaatgagaaagatgttttttttttgctcacgaagtcttgaat
atgaaagattatttcaagagcacgaaattttggtttctaaacgttttttt
tataagaaacaaacgactaattttaatagatcgtcactatttctGTTCTG
AATGatacggtcatgctcacgtagatatcaattatatttgttaaatgcat
aaccaggtaggtccataaaagtatcacttgtttatttctttttcaaaaat
ctttttcaatagtgttgatagtttctctcaatagatatgctttcattttc
tttatttttttgtattttgaccagttatgtcttaaatgtttaattgtttc
aatgttcactgattagtttgataaccaggtaggtccataaaagtatcgct
tgttttactccatatctaaaacttcagtgaaatatttaatataattgaAA
ATCTGCGATTTccgatggaattttcaacagtttacatTCACATTTAATGt
gaattttagtcattttcactaatttgaagcataagcagccatttttacaa
attttagcgTTATTAACACTATTAACTGcagtattcttaatttttgatac
GTAACAGTAATATCCGTGGATATTTGGTTACCTGGACTACGAGTATCCAC
AATGCTATCCCTAAAACTTAGCCATTGCGGATCTGTCAGTAGTTTAGATA
CCTCATAAGTATTTTGTTTTGAGCGGACTTGACCGAAAGCGATTTGAGTG
GCAAGTGTCAGATGACAATGCGTGTCTCGAGAAGTTACTTCCAGTTCATT
AAAAAGCACATTTCCATCTTTGCTACATCATGTCGTGCTTGGATTTATCT
CATTTACATTTAACTTCACTACAAAACATTATGTCAGTCACTAAAAGCGC
GTTGTTGATgtccaaaacaaaatggcgacaaattgaaagtttttcgcAGA
AATCCTACAACATAACCAATGTACAACAACTTTCTAGCTTCCTTAGAGTC
TATtctattgcgaagcgaatttatgagcgaagcagttttgctatattgtg
tgcacgtacctttagcactatcccaagcgaaaatttgctataaaatttgc
tgtataaatcacatcttcaaaccgatcattttatcaaaatgaccttgaat
ggtttgggttgaagccacgaaaactttctcggtttggtagcgactgcgaa
aaatgccgttttaaaatggtctaCCCTAGccgtgaacagcaacaaaatta
ccggaagccgaaacacggactgaagttgatcaaattgccgcgcgggcggc
acgcatctaagcaatctaagcagtggtctttcggttttaaatgtttgttT
TGCTGTTAAATGCAAAAAGattagtttgaacggtgacagaaaggatcttc
atcatcccttgatatttaacagcaagtatcaagtatcaaataaggtcaat
caatgagaggtttttacAAGTCGCGcaggcgggaggagtgctcttttagt
gaacgaaacttaccttgcaaaaccaagtggatattctatgataaagaagt
acggaggtaatcgaattattcgaatttgtcaagaaataaatcaaaactgc
ccaagaaccaacaagccatcgttgtacatttttgtttttgttttattttt
atgttttgatgatttcgacaagactattcgtgattcgaataaataaaaat
gttcgatcgttcgacgaatatcgttcgattttattaaggcaccatttaca
ctagaataactagaaggaaaaaaagagcgatgcacgggcggcggcgggtg
ttgtgccgccttggattatgtggtgtgtttggggcattaaggctcttacg
accctgtctctatagcggctttattagagggatgtttagagtgtctctaa
ttttgctagcaacttgcgaattgagttggagtctggatcgcttcgcaaca
cttatacaatacggctagtttaaatgaaacatttccatcaaagagattaa
gttttgatctaaaacTTGCCAAATATTCTGTAGAATCATGCTTACAGCTC
TGTTTTTCGGTTTGTTTTGGNTTGATGACAATGAGCTGGCTTGACCGAAG
GAAGGCTGTTATGAGTGGCGGGTGTCAGATGAGAATGTGCGTCTCCAGAA
GTTAggtccagttcattataatgcacagttacatcatgttgtgctCGGAA
ATATCTCAGTTAAATTTAAATCCACTACAAAACATTATGTGAGCCACCAA
AAGCACACTGCCtatgctcaaaacaaaatggcggcaacttaaatgttttt
cgtAGAAAAGAGCTTTCTTTTTTGGTGTATCACATTGCTATGTTCCGGCC
AAGATTGAAGAAATAAGTCCTTAGCAACGGGATTTTTTCCGTTGCTAGGG
CAATTTTTCAAGCACCCAGCAGGATTAAAATGCTCACTGCGGCCTGAATG
ATAAAGATATcgctctgaaattttcaggagatgttCAGAAAAACCTAAGG
ATCTCCAAacttccaaaaaccaaaattcgacaattttttcgctgattttc
catttctcagtTAACTACCACCTTAAAACTTGTTAATTTTGCCTAGTGAA
AGTATTACGATTAGCTTTCGCGGtgggtcggaaaatttttttgagaaagc
gAAAGTATTGTCGTCTTGTCGACTTGTTTTCTTTCAGACATGCGCCTTCA
AGAAAAAACGCTCATTTACTCAACTCAAAGTAACTGTTTCAACAAATGTT
CATGTACCTCATTTATCCGGAAGTCGTTGGTATGTGACATTTCGATAACC
AAATGTGCAGGCCAGTATCGATTGCTACCTATGTTGACCAAACAAGTGGA
TATACTCCATTCCACATAACAGGTATTTGTAAGATTAAACGATCCGGTAT
TGTTAGTGTCGCCCTTAAAGTGGAAAATACATACAATGGAAAAAATGCAT
ACACAGGACATGGTGGTTCAACAAGTATTTTTATTGAAGAAATGAACATG
ATCTAATCTTAGTCAAATTatattttaacagatttttagatcattgtttt
ctttattgATATCAATCAgctatttttgttgaaat

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036836	XLOC_036836	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058458-exon-scaffold_311-1491911889:629650..629743	TCONS_00058458-exon-scaffold_311-1491911889:629650..629743	Clytia hemisphaerica	exon
TCONS_00058458-exon-scaffold_311-1510915933:629650..629743	TCONS_00058458-exon-scaffold_311-1510915933:629650..629743	Clytia hemisphaerica	exon
TCONS_00058458-exon-scaffold_311-1575043694:629650..629743	TCONS_00058458-exon-scaffold_311-1575043694:629650..629743	Clytia hemisphaerica	exon
TCONS_00058458-exon-scaffold_311-1491911889:636437..636834	TCONS_00058458-exon-scaffold_311-1491911889:636437..636834	Clytia hemisphaerica	exon
TCONS_00058458-exon-scaffold_311-1510915933:636437..636834	TCONS_00058458-exon-scaffold_311-1510915933:636437..636834	Clytia hemisphaerica	exon
TCONS_00058458-exon-scaffold_311-1575043694:636437..636834	TCONS_00058458-exon-scaffold_311-1575043694:636437..636834	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_311	supercontig	scaffold_311:629650..636834 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.244497	0	0	0.169059	0.534371	0.322348	0.301778	0.105641	0	0	0	0.416875	0.432929	4.05756	6.64617	1.12931	0.771674	0.133264	0	0	0.177363	2.87478	2.74427	3.09573	4.68485	0.343795	0	15.3058	24.5253

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00058458 vs. Swiss-Prot (Human)

BLAST of TCONS_00058458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00058458 (transcript) - C. hemisphaerica