TCONS_00058458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058458
Unique NameTCONS_00058458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058458 ID=TCONS_00058458|Name=TCONS_00058458|organism=Clytia hemisphaerica|type=transcript|length=492bp
AGGACCTCCTGGACAAGATGGCGAATGCTTAAAGAGTTGGAAAGAATGTT
CTTGGTATGATATCAAGGATGCGAGAGTCAGCGGAACGATCGTGACATGC
GCCTTCAAGAAAAAACGCTCATTTACTCAACTCAAAGTAACTGTTTCAAC
AAATGTTCATGTACCTCATTTATCCGGAAGTCGTTGGTATGTGACATTTC
GATAACCAAATGTGCAGGCCAGTATCGATTGCTACCTATGTTGACCAAAC
AAGTGGATATACTCCATTCCACATAACAGGTATTTGTAAGATTAAACGAT
CCGGTATTGTTAGTGTCGCCCTTAAAGTGGAAAATACATACAATGGAAAA
AATGCATACACAGGACATGGTGGTTCAACAAGTATTTTTATTGAAGAAAT
GAACATGATCTAATCTTAGTCAAATTatattttaacagatttttagatca
ttgttttctttattgATATCAATCAgctatttttgttgaaat
Run BLAST on NCBI

transcript from alignment at scaffold_311:629650..636834+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058458 ID=TCONS_00058458|Name=TCONS_00058458|organism=Clytia hemisphaerica|type=transcript|length=7185bp|location=Sequence derived from alignment at scaffold_311:629650..636834+ (Clytia hemisphaerica)
AGGACCTCCTGGACAAGATGGCGAATGCTTAAAGAGTTGGAAAGAATGTT
CTTGGTATGATATCAAGGATGCGAGAGTCAGCGGAACGATCGTGGTAAGA
TCACATACTCTATAAAATCGTCAAAAAAGTTTAGCCTTtggaaattcttt
atttttttggttttaagcCTCAAAGCATAACGCTAAGCATAACCGAGTGC
ATATCCAGGTGAAATTTACTGACCGAAATttgggtaactctcggacgtga
attttatacacgattaacccccccccccccgacctATATCAGAGGGTATG
CGTATGCGTGCAGCCTAGGCCTGATCCCTTCATTAAaacttcaaagtttt
tttttctttattttctaacGAAACGACAATTTTTGccgtttttattttca
aaaaatattttttgtaaataaagtAATTGAATTTCGGTTGCAAACTGTGA
AGTTAAGATAGTAGCAATATAATTCCACTGGTTTTATTTACTATGCTTAC
CTTTTCGGCCTTTTtcacaccggcccttattggcgttatttttgggctcg
tggcgtaataagggccggtgtaaaaagggcaaagattttacaattttaac
ctaaaagcggcgttaatttttattctcaatttaaaggatttcaGGTATGA
TTCGaaagacgaaaattatccattgttggacctaccccagtggggtggag
gtcctataaattaacccatgttcgttcgttagtgtgttagttaccagctt
ttctcgagattggctcattaattttttctgatttttggcacaaaggtgca
tgaccatactcttaggtgccaaataaacgggggggttcgaataaacgggg
gggttcgaataaacgggggggttggaaaattttNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaggaatcttttga
tttttggtacaaaggtgcaaaatggtggtggccaaaatgtgacggagcct
gattttcgaaaaaaaaatttttgggccaatttgggcctaaaaacggctaa
aaaacgggtttttttagactttgtgaaaaattgggtcattaattttttct
gatttttgtatgaaagtagggtacaatcatagttaaaggatggctcaagc
agatttttgcaaaaaaatgtttttggctcaaaaatcgcatttttatctat
aagaaccacttttaataagaatacatcaatgttctttgccatgttattat
tattatttttattagtttttttacgatgaaaatgtcgcggtggagggtaa
tgatttgagttttctgtaaacacttattatttttttggctgaaaaatgaa
tctttatctataagaatcactatttatgagcatagaTCAATGNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaggaatcttttga
tttttggtacaaaggtgcaaaatggtggtggccaaaatgtgacggagccc
gattttcgaaaaaaaaatttttgggccaatttgggcctaAAAACgggtca
agttgaacatttacaagaatttttgtcattggattggtcgttaactattc
aaacaaaaacttttattatatttttctaaagaacgcatcatctctattgt
tttgaataaccaattatgtgagcatcttgtaaaaacttcaatacaactgc
taaaaacggctaaaaaacgggtttttttagactttgtgaaaaattgggtc
attaattttttctgatttttgtatgaaagtagggtaccatcatgggtaaa
agatggctctcaagcagatttttgcaaaaaaattttgttggctcaaaaaa
tgcatgtttatctataagaatcactattaataagcatacatcaatgttct
tagtcaaattactcaatttttttatgagatagatgttttttttgctcatg
agggtttacttttagagagtatgtgtgtttaaacatgaaattttggttgc
ttagcgtgtttttatagaaaaactggccgaattcgatatttttttataag
cacattatcaatcacttaggtattagcttttcttgagatcagctctttca
ttctttatgattgtttgcacaaagatgcataactttaaacccttaaatgt
gacggagcccgattttcgaaaaaaaatgtttttgggcaaatttgggccaa
aaaacggctaaaaaaagggttttttgggcTTTGTGAaacattggatcatt
gttttttttctgattttttacatgaaagtaggtaaaagatggctcgagca
gatttttgttaaaaaaagaatttttcagctaaaaaaacgcatctttattt
ataagaatcgctattaataagcatacaacaatgttcttagccaaattact
caattttttaatgagaaagatgttttttttttgctcacgaagtcttgaat
atgaaagattatttcaagagcacgaaattttggtttctaaacgttttttt
tataagaaacaaacgactaattttaatagatcgtcactatttctGTTCTG
AATGatacggtcatgctcacgtagatatcaattatatttgttaaatgcat
aaccaggtaggtccataaaagtatcacttgtttatttctttttcaaaaat
ctttttcaatagtgttgatagtttctctcaatagatatgctttcattttc
tttatttttttgtattttgaccagttatgtcttaaatgtttaattgtttc
aatgttcactgattagtttgataaccaggtaggtccataaaagtatcgct
tgttttactccatatctaaaacttcagtgaaatatttaatataattgaAA
ATCTGCGATTTccgatggaattttcaacagtttacatTCACATTTAATGt
gaattttagtcattttcactaatttgaagcataagcagccatttttacaa
attttagcgTTATTAACACTATTAACTGcagtattcttaatttttgatac
GTAACAGTAATATCCGTGGATATTTGGTTACCTGGACTACGAGTATCCAC
AATGCTATCCCTAAAACTTAGCCATTGCGGATCTGTCAGTAGTTTAGATA
CCTCATAAGTATTTTGTTTTGAGCGGACTTGACCGAAAGCGATTTGAGTG
GCAAGTGTCAGATGACAATGCGTGTCTCGAGAAGTTACTTCCAGTTCATT
AAAAAGCACATTTCCATCTTTGCTACATCATGTCGTGCTTGGATTTATCT
CATTTACATTTAACTTCACTACAAAACATTATGTCAGTCACTAAAAGCGC
GTTGTTGATgtccaaaacaaaatggcgacaaattgaaagtttttcgcAGA
AATCCTACAACATAACCAATGTACAACAACTTTCTAGCTTCCTTAGAGTC
TATtctattgcgaagcgaatttatgagcgaagcagttttgctatattgtg
tgcacgtacctttagcactatcccaagcgaaaatttgctataaaatttgc
tgtataaatcacatcttcaaaccgatcattttatcaaaatgaccttgaat
ggtttgggttgaagccacgaaaactttctcggtttggtagcgactgcgaa
aaatgccgttttaaaatggtctaCCCTAGccgtgaacagcaacaaaatta
ccggaagccgaaacacggactgaagttgatcaaattgccgcgcgggcggc
acgcatctaagcaatctaagcagtggtctttcggttttaaatgtttgttT
TGCTGTTAAATGCAAAAAGattagtttgaacggtgacagaaaggatcttc
atcatcccttgatatttaacagcaagtatcaagtatcaaataaggtcaat
caatgagaggtttttacAAGTCGCGcaggcgggaggagtgctcttttagt
gaacgaaacttaccttgcaaaaccaagtggatattctatgataaagaagt
acggaggtaatcgaattattcgaatttgtcaagaaataaatcaaaactgc
ccaagaaccaacaagccatcgttgtacatttttgtttttgttttattttt
atgttttgatgatttcgacaagactattcgtgattcgaataaataaaaat
gttcgatcgttcgacgaatatcgttcgattttattaaggcaccatttaca
ctagaataactagaaggaaaaaaagagcgatgcacgggcggcggcgggtg
ttgtgccgccttggattatgtggtgtgtttggggcattaaggctcttacg
accctgtctctatagcggctttattagagggatgtttagagtgtctctaa
ttttgctagcaacttgcgaattgagttggagtctggatcgcttcgcaaca
cttatacaatacggctagtttaaatgaaacatttccatcaaagagattaa
gttttgatctaaaacTTGCCAAATATTCTGTAGAATCATGCTTACAGCTC
TGTTTTTCGGTTTGTTTTGGNTTGATGACAATGAGCTGGCTTGACCGAAG
GAAGGCTGTTATGAGTGGCGGGTGTCAGATGAGAATGTGCGTCTCCAGAA
GTTAggtccagttcattataatgcacagttacatcatgttgtgctCGGAA
ATATCTCAGTTAAATTTAAATCCACTACAAAACATTATGTGAGCCACCAA
AAGCACACTGCCtatgctcaaaacaaaatggcggcaacttaaatgttttt
cgtAGAAAAGAGCTTTCTTTTTTGGTGTATCACATTGCTATGTTCCGGCC
AAGATTGAAGAAATAAGTCCTTAGCAACGGGATTTTTTCCGTTGCTAGGG
CAATTTTTCAAGCACCCAGCAGGATTAAAATGCTCACTGCGGCCTGAATG
ATAAAGATATcgctctgaaattttcaggagatgttCAGAAAAACCTAAGG
ATCTCCAAacttccaaaaaccaaaattcgacaattttttcgctgattttc
catttctcagtTAACTACCACCTTAAAACTTGTTAATTTTGCCTAGTGAA
AGTATTACGATTAGCTTTCGCGGtgggtcggaaaatttttttgagaaagc
gAAAGTATTGTCGTCTTGTCGACTTGTTTTCTTTCAGACATGCGCCTTCA
AGAAAAAACGCTCATTTACTCAACTCAAAGTAACTGTTTCAACAAATGTT
CATGTACCTCATTTATCCGGAAGTCGTTGGTATGTGACATTTCGATAACC
AAATGTGCAGGCCAGTATCGATTGCTACCTATGTTGACCAAACAAGTGGA
TATACTCCATTCCACATAACAGGTATTTGTAAGATTAAACGATCCGGTAT
TGTTAGTGTCGCCCTTAAAGTGGAAAATACATACAATGGAAAAAATGCAT
ACACAGGACATGGTGGTTCAACAAGTATTTTTATTGAAGAAATGAACATG
ATCTAATCTTAGTCAAATTatattttaacagatttttagatcattgtttt
ctttattgATATCAATCAgctatttttgttgaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036836XLOC_036836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058458-exon-scaffold_311-1491911889:629650..629743TCONS_00058458-exon-scaffold_311-1491911889:629650..629743Clytia hemisphaericaexon
TCONS_00058458-exon-scaffold_311-1510915933:629650..629743TCONS_00058458-exon-scaffold_311-1510915933:629650..629743Clytia hemisphaericaexon
TCONS_00058458-exon-scaffold_311-1575043694:629650..629743TCONS_00058458-exon-scaffold_311-1575043694:629650..629743Clytia hemisphaericaexon
TCONS_00058458-exon-scaffold_311-1491911889:636437..636834TCONS_00058458-exon-scaffold_311-1491911889:636437..636834Clytia hemisphaericaexon
TCONS_00058458-exon-scaffold_311-1510915933:636437..636834TCONS_00058458-exon-scaffold_311-1510915933:636437..636834Clytia hemisphaericaexon
TCONS_00058458-exon-scaffold_311-1575043694:636437..636834TCONS_00058458-exon-scaffold_311-1575043694:636437..636834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:629650..636834 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.244497	0	0	0.169059	0.534371	0.322348	0.301778	0.105641	0	0	0	0.416875	0.432929	4.05756	6.64617	1.12931	0.771674	0.133264	0	0	0.177363	2.87478	2.74427	3.09573	4.68485	0.343795	0	15.3058	24.5253
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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