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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058452 ID=TCONS_00058452|Name=TCONS_00058452|organism=Clytia hemisphaerica|type=transcript|length=966bp
CAAAAAGTGTACGCTCTTGTACGCTTTTGTGCTCTTTTCtacgctgaaaa
ttttcaacttttctgaGCGTACACGAGCGtactttttaaaacaattagTC
ATCAACCAATCAAGTGAGAGAAAAATTGCTgatcatgcaaaaaaaatgta
aacatacagATTGTGCGGGAATTCCAATTGTGAgggaatcaaaaatcaaa
aatcaactaCGAACGAATTCTACAAAAGTTGTTTTCATTCTAcatttgtg
tgtgtgtgtgttgtGTAGAGTTTTATGATGGCAAGTTTTACAGATGAAAC
TCCAGTAAAAACATCTGAAGAAAATTATACTCCGAATGTAAAATTTTTGA
TCAGTGACCAAAGAGTAAATGTCGAGCTTCAATATCAGCAGCAGCAGCAG
CAACAACAGCTATACATGCAATCTTACCTTCACCAATTACAAACGCAACA
ACCAAGTCCAACGTATGCACAAATACAGCAGCCAACCCAATATGATGAGC
AATTAAGTCCGGGAATGATATCATCTAAAAATGAAATAGCGGATTCTGCG
AATTCCATCGCCCGTGGCAATGACGATATCTTCGAGGATCTGGAGGGTGA
TAATGGTGCTGATGATGAAGAATATGACGATGAAGCCGACGACAGGATGA
TAGAAAGGAACAGAAATTTATTGATGAACTCTACCGAAATAGGGGAAGGC
AGCGAAGCAGTAGCTTTACCTGAAATTTCTATCAATAAGGAGTTGCTTAT
AGAATCTGTACGACCCTATCCAATTCTGTGGCAACTAAGTCACCCAGGAT
ATAAAGATACAACAAGAAAGAAGATCATTTGGCAAAGTATCAAAAGTCAT
CAATTCCCTGGCCATGGTGTTGAATCACTCAAGCTACAATGGAAGTATCT
TAAAGACGCATGGACCAGATGCAACACAAAAAGAAGTCGACATTTGCTAA
AGAGTGGTAGTAAAAG Run BLAST on NCBI protein sequence of TCONS_00058452-protein >TCONS_00058452-protein ID=TCONS_00058452-protein|Name=TCONS_00058452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MMASFTDETPVKTSEENYTPNVKFLISDQRVNVELQYQQQQQQQQLYMQS
YLHQLQTQQPSPTYAQIQQPTQYDEQLSPGMISSKNEIADSANSIARGND
DIFEDLEGDNGADDEEYDDEADDRMIERNRNLLMNSTEIGEGSEAVALPE
ISINKELLIESVRPYPILWQLSHPGYKDTTRKKIIWQSIKSHQFPGHGVE
SLKLQWKYLKDAWTRCNTKRSRHLLKSGSK Run BLAST on NCBI transcript from alignment at scaffold_311:592727..593881+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058452 ID=TCONS_00058452|Name=TCONS_00058452|organism=Clytia hemisphaerica|type=transcript|length=1155bp|location=Sequence derived from alignment at scaffold_311:592727..593881+ (Clytia hemisphaerica)
CAAAAAGTGTACGCTCTTGTACGCTTTTGTGCTCTTTTCtacgctgaaaa
ttttcaacttttctgaGCGTACACGAGCGtactttttaaaacaattagTC
ATCAACCAATCAAGTGAGAGAAAAATTGCTgatcatgcaaaaaaaatgta
aacatacagATTGTGCGGGAATTCCAATTGTGAgggaatcaaaaatcaaa
aatcaactaCGAACGAATTCTACAAAAGTTGTTTTCATTCTAcatttgtg
tgtgtgtgtgttgtGTAGAGTTTTATGATGGCAAGTTTTACAGATGAAAC
TCCAGTAAAAACATCTGAAGAAAATTATACTCCGAATGTAAAATTTTTGA
TCAGTGACCAAAGAGTAAATGTCGAGCTTCAATATCAGCAGCAGCAGCAG
CAACAACAGCTATACATGCAATCTTACCTTCACCAATTACAAACGCAACA
ACCAAGTCCAACGTATGCACAAATACAGCAGCCAACCCAATATGATGAGC
AATTAAGTCCGGGAATGATATCATCTAAAAATGAAATAGCGGATTCTGCG
AATTCCATCGCCCGTGGCAATGACGATATCTTCGAGGATCTGGAGGGTGA
TAATGGTGCTGATGATGAAGAATATGACGATGAAGCCGACGACAGGATGA
TAGAAAGGAACAGAAATTTATTGATGAACTCTACCGAAATAGGGGAAGGC
AGCGAAGCAGTAGCTTTACCTGAAATTTCTATCAATAAGGAGTTGCTTAT
AGAATCTGTACGACCCTATCCAATTCTGTGGCAACTAAGTCACCCAGGAT
ATAAAGATACAACAAGAAAGAAGATCATTTGGCAAAGTATCAAAAGTCAT
CAATTCCCTGGCCATGGTGGTGAGTTATTAAAAGTATTTTTACAATTGAA
TTTTAAGCATCATTCTAAATAATTGATCTAAAATATACTTGATGACAAAT
TTTTAAGAGAAAAAATTCCTTGACTAGGTTCAACTAATTCATTGAAACgg
taagaagaaaaaaactatTCCCTTGTTCCATATCTAAATTGATTGTTCTT
TTTTACAGTTGAATCACTCAAGCTACAATGGAAGTATCTTAAAGACGCAT
GGACCAGATGCAACACAAAAAGAAGTCGACATTTGCTAAAGAGTGGTAGT
AAAAG Coding sequence (CDS) from alignment at scaffold_311:592727..593881+ >TCONS_00058452 ID=TCONS_00058452|Name=TCONS_00058452|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_311:592727..593881+ (Clytia hemisphaerica)
ATGATGGCAAGTTTTACAGATGAAACTCCAGTAAAAACATCTGAAGAAAA
TTATACTCCGAATGTAAAATTTTTGATCAGTGACCAAAGAGTAAATGTCG
AGCTTCAATATCAGCAGCAGCAGCAGCAACAACAGCTATACATGCAATCT
TACCTTCACCAATTACAAACGCAACAACCAAGTCCAACGTATGCACAAAT
ACAGCAGCCAACCCAATATGATGAGCAATTAAGTCCGGGAATGATATCAT
CTAAAAATGAAATAGCGGATTCTGCGAATTCCATCGCCCGTGGCAATGAC
GATATCTTCGAGGATCTGGAGGGTGATAATGGTGCTGATGATGAAGAATA
TGACGATGAAGCCGACGACAGGATGATAGAAAGGAACAGAAATTTATTGA
TGAACTCTACCGAAATAGGGGAAGGCAGCGAAGCAGTAGCTTTACCTGAA
ATTTCTATCAATAAGGAGTTGCTTATAGAATCTGTACGACCCTATCCAAT
TCTGTGGCAACTAAGTCACCCAGGATATAAAGATACAACAAGAAAGAAGA
TCATTTGGCAAAGTATCAAAAGTCATCAATTCCCTGGCCATGGTGTTGAA
TCACTCAAGCTACAATGGAAGTATCTTAAAGACGCATGGACCAGATGCAA
CACAAAAAGAAGTCGACATTTGCTAAAGAGTGGTAGTAAAATGATGGCAA
GTTTTACAGATGAAACTCCAGTAAAAACATCTGAAGAAAATTATACTCCG
AATGTAAAATTTTTGATCAGTGACCAAAGAGTAAATGTCGAGCTTCAATA
TCAGCAGCAGCAGCAGCAACAACAGCTATACATGCAATCTTACCTTCACC
AATTACAAACGCAACAACCAAGTCCAACGTATGCACAAATACAGCAGCCA
ACCCAATATGATGAGCAATTAAGTCCGGGAATGATATCATCTAAAAATGA
AATAGCGGATTCTGCGAATTCCATCGCCCGTGGCAATGACGATATCTTCG
AGGATCTGGAGGGTGATAATGGTGCTGATGATGAAGAATATGACGATGAA
GCCGACGACAGGATGATAGAAAGGAACAGAAATTTATTGATGAACTCTAC
CGAAATAGGGGAAGGCAGCGAAGCAGTAGCTTTACCTGAAATTTCTATCA
ATAAGGAGTTGCTTATAGAATCTGTACGACCCTATCCAATTCTGTGGCAA
CTAAGTCACCCAGGATATAAAGATACAACAAGAAAGAAGATCATTTGGCA
AAGTATCAAAAGTCATCAATTCCCTGGCCATGGTGTTGAATCACTCAAGC
TACAATGGAAGTATCTTAAAGACGCATGGACCAGATGCAACACAAAAAGA
AGTCGACATTTGCTAAAGAGTGGTAGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058452-exon-scaffold_311-1491911889:592727..593595 | TCONS_00058452-exon-scaffold_311-1491911889:592727..593595 | Clytia hemisphaerica | exon |
| TCONS_00058452-exon-scaffold_311-1510915933:592727..593595 | TCONS_00058452-exon-scaffold_311-1510915933:592727..593595 | Clytia hemisphaerica | exon |
| TCONS_00058452-exon-scaffold_311-1575043694:592727..593595 | TCONS_00058452-exon-scaffold_311-1575043694:592727..593595 | Clytia hemisphaerica | exon |
| TCONS_00058452-exon-scaffold_311-1491911889:593785..593881 | TCONS_00058452-exon-scaffold_311-1491911889:593785..593881 | Clytia hemisphaerica | exon |
| TCONS_00058452-exon-scaffold_311-1510915933:593785..593881 | TCONS_00058452-exon-scaffold_311-1510915933:593785..593881 | Clytia hemisphaerica | exon |
| TCONS_00058452-exon-scaffold_311-1575043694:593785..593881 | TCONS_00058452-exon-scaffold_311-1575043694:593785..593881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:592727..593881 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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