TCONS_00058450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058450
Unique NameTCONS_00058450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length933

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058450 ID=TCONS_00058450|Name=TCONS_00058450|organism=Clytia hemisphaerica|type=transcript|length=933bp
gaaatcCAAATCAACTCGGAAGAAACCAAAAACCAAACGGAAACGTATTT
GTATGCCACGCTCAGCTGCTTCCACCAAAACTAAAACGAAAGCCAAAACA
CCTTCATCTAGAGCATCAAAAACAATGACTCCTGGATTGCACGATCGTAC
GTTACCGCGCGCTGAAGCAACAAGTCCACTTGAGTTTGCTAGGAAAAGGT
TGCACGTTTCGGCCGTTCCCGATGCGCTTCCATGCCGCGAAGACGAATAC
GACGAGATTTACACTTTCGTCCAAGAGTGTCTGCAAGAAGGCACTGGAGG
TTGTATGTATATTTCCGGAGTTCCGGGAACCGGAAAAACCGCCACAGTCC
ACGAAATCATCCGGACATTACAGAACTTCTCAGACGAATCCATCGTTCCG
CAATTTAAATTTATCGAGGTGAACGGTATGCGGCTGACAGACCCTAATCA
AACGTTCTGCAAAATACTTAAGGATTTGACAGGTCAGAAAGCCACACCAG
ATCACGCTGCAAGCATCTTGGAGAGAAGGTTTAGCCAACCTGCGCCCAAG
AAAGAAAATACTGTTCTCTTAGTTGATGAgttggaTTTATTATGGACACG
CAAACAAAATGTCATGTATAATCTCTTCGACTGGCCCACCAGGCGCCATT
CGCGACTCATCGTGCTTGCCATCGCCAATACCATGGACCTTCCTGAACGC
ATCATGATGAATCGTGTTTCGTCACGTCTCGGTTTGACTCGATTAACTTT
CCAACCATACACCTTTCGACAGTTACAAGAGATTGTCGTATCGAGGCTAA
GAGGAATGAATGCTTTTGAAGAGGACGCTCTTGAATTAGTGGCCCGTAAG
GTTGCAGCTCTCTCTGGTGACGCTCGTCGTTGTCTTGATATTTGTCGTCG
TGCCGTCGAAATCGCCGAAGAGCAGCAGCAACA
Run BLAST on NCBI

transcript from alignment at scaffold_311:562844..568701+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058450 ID=TCONS_00058450|Name=TCONS_00058450|organism=Clytia hemisphaerica|type=transcript|length=5858bp|location=Sequence derived from alignment at scaffold_311:562844..568701+ (Clytia hemisphaerica)
gaaatcCAAATCAACTCGGAAGAAACCAAAAACCAAACGGAAACGTATTT
GTATGCCACGCTCAGCTGCTTCCACCAAAACTAAAACGAAAGCCAAAACA
CCTTCATCTAGAGCATCAAAAACAATGACTCCTGGATTGCACGATCGTAC
GTTACCGCGCGCTGAAGCAACAAGTCCACTTGAGTTTGCTAGGAAAAGGT
AAGTTGTAGTTTGTGAATGTAAAAACACCTCAAACATTCTAGCCTTAGAG
GTTGTTGGCCTTCTCCCCTTACCAttggaatgcgggtgaaggaaaaaagc
tctcatgcggccggccgggaaaaagttttttctgctatttttgataactt
ttgatagatcattgaaatagaaagataacttttttgtactacaaacagta
tgaagtaagccctgaatactagcGTATCAACTATTAACGAACAAAACTTA
ATTTACAAGCGgaaatatctaaccaaacgacgtttgatagctcgAACGTT
CAACTTaactttctttatgatgaaccatatagatgaacccatagtctgcg
gccgggtcagcgTTTTTTTCAcacggccggtttccggaaacactacattt
ttttaatttttgactaatgaaaatattttgtttgatgTAATATTTCTCTA
CTGACAAAAAAAACTACTCGATCACTATGTATACCGCTGAATAATTCCCT
CTGGAAGATGCTATGCGCCAGTAGCCTGTATCAGCCCATCCACGGGTAAT
TAATTTGTTTGATAACGTACTTCACCTCATTCCCTTAGCAAATAGTAATT
TGGTAATAAGTAATCTGTGGGGAAATACCTGGGATTCCTGGGTTTTGCTA
TTACAATGgattttctttaatttgaacACGCCCGGGGATCACAAATCTGT
TCGAATTATGGTAATTTCATTGAGTAAAATACATTATGCAAAAGACATTG
TTAACCgaagggaccagaaaacttgttcaagTTTAGGAGACATTCGAATG
ATAGACTCCACTGTAATCACCTGTTTCCTTTACCTGTTTTCCTTAAAGGT
TGCACGTTTCGGCCGTTCCCGATGCGCTTCCATGCCGCGAAGACGAATAC
GACGAGATTTACACTTTCGTCCAAGAGTGTCTGCAAGAAGGCACTGGAGG
GTAAGTTGGGCGAGTTTCTTTAGATGTAAAAGTattttaatcggattaac
tttcgcaagattaaatttcgcgttttCCCTGACTCGCAGAATTAAAtcca
attaaatttttttcgctctcaaaatttaatccaattaaagtaccacattg
cccgatgatgggaaaagaatctctcgaaacgtagccaaacgttaatctcg
tgatccaagccacgataaacttccaatatgaatatcactgggtcgataaa
cGCAAGCTTATTTAGATTAACTGATTAAAGTACGATGCTCTACACCACTC
TTAAGAGTACTTAATCTTTCTTTATGCAGCGTATGTACAAAGAGTCTTGA
AATTCTTTcttcgatttcaaaaaatgatttatCTTGTGCATACGTGAATC
GGCTCTCTCAACTTTAGATATTGCATTCGTAATTCGTAATTtcgctcttc
caagcaaaaaaaagtgaatatcgcaaaaaatattcctgctattgttttcg
aaaacctgcgaagcttcttattggttaagcgctgaaattctattgtaatg
tcatgtGATCTAGGTAGGACTTCCTACCTAacatcggcacacttttcagc
caaagcacgacgtctagcccttcgagctttatAAGTCCATGGTTGATACT
CTTTGACACTCATTGATCGATCCTTAACTCTTATCCTCGTGTTCCTGTTC
ATCCGACGGCCAGTCTCGCATTTTAGTTTATTACGTGTCCTGGTTTTCTT
CGTCAATTACGTTTTAATTACCAATTAATTACGATTTTCAACCAAAAACA
ATGTACTGGCTTTTTAGGGGACTGATGATGAGTTTACAAGGAAAATATGC
TCTTAGAGACTGCCTCTAAAACAAACCAAGCAAACTCCCGCCATAACTTT
ATATGAGAGATGTCTCCCTGAGCCTCTTCGGTGGAGTGCAAAATTCTTTT
AGTATTTGAATAGcccaataaaaatattgaccttATTTTATCACTTCAAT
GCAAGGGAATCTCACATTTTTCACAATCCTCTCCTAAAATTGTGTTTTCG
ATACCGTCGTCGCAAAGGATTTCCTTGTATTTTTGTTACCAGGAAGATAG
GCGTTACACTAAAACAATTACGATGAACAAGTTTTCAGTAAAAGattaat
atatttttcagttgttacatacacgttttttttaagaaactagttttacc
aagcagcctcaatgtttttTAAGAGCCTTAagtgtttctaaactttttga
cataatcagcctattttttaTGCAAAGAAATAAACATATGTTTTTATTGG
AAGGtacttaaaaaaaacgaattaaaaatgttattttctcattctgagcc
tcatgtttcttaaaagtgtttcttaaaaaaaacgtgtattacatCCATTT
TTCTACGCTTATATTCAACTTGATAAAGACAACCGTCGAAACGTTGCATA
CACAACTGTGTTTTTAATGTTCACCTTTTCAGTTGTATGTATATTTCCGG
AGTTCCGGGAACCGGAAAAACCGCCACAGTCCACGAAATCATCCGGACAT
TACAGAACTTCTCAGACGAATCCATCGTTCCGCAATTTAAATTTATCGAG
GTGAACGGTATGCGGCTGACAGACCCTAATCAAACGTTCTGCAAAATACT
TAAGGTGggtttaaagattttgttttgctttgtttgattgatttttaaac
AACATGAAGAGTCGTTTTAATAGCGAGATNAGTTTTTAAGTgctttgttt
gattgatttaaggtataaaatgtttcttttaaCTTTCCACTGAGAAAGGT
GTTTTGAGGTACGATGACACATCATAACTCAATGGAAAACTCATTATGTT
GCACTAAGCCATCCTATAGAATTTGGAAGCAAATTCGGAGATAATTCCAC
GAAATTTAAACAGTAAATCAAGTGAAAACATGAGCAATTTGGTAAATTTC
TGTATGATTAACTCCTAATAATTTCCTTTAAGAAAGCCTAATACTGGAGC
ATTTCCACTCATCTACCACTGCTTTTGCCTGTAATGTTTACATTCTATCC
AACACAGTCTCGCTTTCATGTTGAATTTCCCGTGTTTGAGTATTGCGCAA
TCGATATCTGGAAAGGTTGCTGCAAAGTTAAATGATAATGAGTTAAATGC
TACAGGGTAACTTTTTTCCTATTCATCGTATCACCATGAAACTCAAAACC
CTTTTTCCTTAGTAAATTTAGAGCCTTTGTGTGAAATCTGAAAGTTATAC
CATAAATATTTATCAAGAATTCgaagtttgaagaaaaagtaCTGTTTTTA
CAAGCGAACAGGAAGTTTTATTTTGACGTCAGAAATGGAAAAGTACAAGT
TTTTCAGTTTCATAAGAAATACCTTTAAGCATGTTTCATTGAACCTATAG
ATGAACGAATTTGAATGTTGAACGCCTTAACAAATTCAAACCAACGTTTT
CTTCTTCAGGATTTGACAGGTCAGAAAGCCACACCAGATCACGCTGCAAG
CATCTTGGAGAGAAGGTTTAGCCAACCTGCGCCCAAGAAAGAAAATACTG
TTCTCTTAGTTGATGAggtaacccagctggcacacaacattgtttcaacg
tttatttaacgttcacaacgtccatataacgttagatgaacgttaaaaca
acgttgtgtgccagctggtaaACTGTTTAAAGggagggacataaaagtac
tgacgtaATTTGCAagcaaaccgtatgcagcgggatactacaaaatcaaa
acaaatatggctgattttgattgtttcaatattgttttacaagtttgttt
tggacacgtgattttaattgttctatTTAATGACACGTAGgttgcgcaat
gtttacattttgtccCTTTAATCCACAGGAATTTCCTCTTACTTGACGGT
GTACTGGGTAACCAAAGCAAAGGGTTCGATTGCTCGTAAGGGTTTGTAAT
AATGCGAATTTTTACAAAAGcaacttttttttgtaaagaagaaaatgaaa
cttaaaatttgatacATACATTTGACGCCCTTTAATCTTCTATTTGAcgc
gctccattattcgataatatcgtcatcgtcaacaagaaactcttataaat
GACGCTCTACTATTTGATACTCTCGATGAAATAATCTTTTTCTATTCATT
TGACTAAATTTTacaaatgacccatcaaaatttatgttGATCTGTCCTCT
TTCCGATTTGAAAGAATTACTTTTTTTGATATTTGTAGCATTTGAGGAAA
TTGAGTTCAAAGTGTTAAACGTCTTCGTGTTGCACCCGGTAGTTCATTTT
CGACTGCAATTCTTTGAAGGCCTCCGTCTACGGGATGGCCACTTTAGATT
TCTTAATAtccatgatgtaatctttttatTGATTAACACATTGATTCAAA
ACATTGGTCCGCCATTATAGATGGCATAATATTTTCGCACTGCAATCTTT
GTCAAGAAAAAATccctcgaacaaatttgtgtttcccgTCCGTATTCGAG
TTATGCAGACTTAAGTGTATCACGCCTTAAGTTATTAATTGTGCTTTCTT
TTGTGTACACCATcggtttcaaaaaaaatctgttACCTTGTCTGATCTTC
TGCCATCAATAATGGCCGCCAAGTTTTACGTCACATCTTTTGTTTATGCG
TAgtaaagattgcatcatgaatgTCAAGAATTGGTTGATGACACTTACGA
TTCTAAATTTTTGTGAAGACCGCCGTTGATCCACCCATTTTATACTTTTA
ATccatattttgttttagttggaTTTATTATGGACACGCAAACAAAATGT
CATGTATAATCTCTTCGACTGGCCCACCAGGCGCCATTCGCGACTCATCG
TGCTTGCCATCGCCAATACCATGGACCTTCCTGAACGCATCATGATGAAT
CGTGTTTCGTCACGTCTCGGTTTGACTCGATTAACTTTCCAACCATACAC
CTTTCGACAGTTACAAGAGATTGTCGTATCGAGGCTAAGAGGAATGAATG
CTTTTGAAGAGGACGCTCTTGAATTAGTGGCCCGTAAGGTACGTTCTAAA
CACTAGGAATTAACggagaaaaactttttgacacaaaaactttttgacgt
ctttgtaaggtcattggtcggttgaaaaatgaagcaattccattggtcga
aattgacgtaacgaaTGAAAAaatagaacttccttcaacttttttttgtt
cgcgcgaaacttcaggcaaaaaagattaagaacaaAATTGTCGCcctttc
gcgcgaaagtggagaccggccttaagatgTGGTCACCTGTATTCCCGTTA
TAAATCTTGATGCAAGTcactaaattgaaaatcaaaattaagttGGCCAA
TTATTGAAGGCCATCGTGTAAGGTTTAAGCTACCATTTGCTTATATGGCA
TtcataaacaaaagaaatacaaaTTTCCACTCCAACCACGCTGCACGAGC
ACAAATTTTGTGCAGATCTTTTGTTTAATCTAGTTTGTCAGCATATTATT
CATAAAAACAGATAAAGAGATGCGTCTGAAATATGAATTTCGCACTAGGT
TTTGTTTTTCGTTAATCTTGTTTTGCACGAACTAAAGACATACTGAAtca
ttgaatattttcaatACTTTACCAGGTTGCAGCTCTCTCTGGTGACGCTC
GTCGTTGTCTTGATATTTGTCGTCGTGCCGTCGAAATCGCCGAAGAGCAG
CAGCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036832XLOC_036832Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058450-exon-scaffold_311-1491911889:562844..563041TCONS_00058450-exon-scaffold_311-1491911889:562844..563041Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1510915933:562844..563041TCONS_00058450-exon-scaffold_311-1510915933:562844..563041Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1575043694:562844..563041TCONS_00058450-exon-scaffold_311-1575043694:562844..563041Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1491911889:563892..563993TCONS_00058450-exon-scaffold_311-1491911889:563892..563993Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1510915933:563892..563993TCONS_00058450-exon-scaffold_311-1510915933:563892..563993Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1575043694:563892..563993TCONS_00058450-exon-scaffold_311-1575043694:563892..563993Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1491911889:565476..565647TCONS_00058450-exon-scaffold_311-1491911889:565476..565647Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1510915933:565476..565647TCONS_00058450-exon-scaffold_311-1510915933:565476..565647Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1575043694:565476..565647TCONS_00058450-exon-scaffold_311-1575043694:565476..565647Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1491911889:566453..566560TCONS_00058450-exon-scaffold_311-1491911889:566453..566560Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1510915933:566453..566560TCONS_00058450-exon-scaffold_311-1510915933:566453..566560Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1575043694:566453..566560TCONS_00058450-exon-scaffold_311-1575043694:566453..566560Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1491911889:567762..568031TCONS_00058450-exon-scaffold_311-1491911889:567762..568031Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1510915933:567762..568031TCONS_00058450-exon-scaffold_311-1510915933:567762..568031Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1575043694:567762..568031TCONS_00058450-exon-scaffold_311-1575043694:567762..568031Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1491911889:568619..568701TCONS_00058450-exon-scaffold_311-1491911889:568619..568701Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1510915933:568619..568701TCONS_00058450-exon-scaffold_311-1510915933:568619..568701Clytia hemisphaericaexon
TCONS_00058450-exon-scaffold_311-1575043694:568619..568701TCONS_00058450-exon-scaffold_311-1575043694:568619..568701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:562844..568701 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.971507	1.91397	0.808755	0.062959	0.319543	0.723484	0.450116	0.654196	1.01579	1.39742	1.31886	1.39128	1.17011	1.39318	2.15201	2.42637	1.08738	2.69981	1.22662	0.949344	0.970973	0.781735	0.588974	1.17918	0.203737	0.233261	0.863028	0	0.7608	1.48305
Blast
[Close]
BLAST of TCONS_00058450 vs. Swiss-Prot (Human)
Match: ORC1 (Origin recognition complex subunit 1 OS=Homo sapiens GN=ORC1 PE=1 SV=2)

HSP 1 Score: 356.295 bits (913), Expect = 3.036e-115
Identity = 179/267 (67.04%), Postives = 217/267 (81.27%), Query Frame = 2 
Query:  131 PGLHDRTLPRAEATSPLEFARKRLHVSAVPDALPCREDEYDEIYTFVQECLQEGTGGCMYISGVPGTGKTATVHEIIRTLQNFSDESIVPQFKFIEVNGMRLTDPNQTFCKILKDLTGQKATPDHAASILERRFSQPAPKKENTVLLVDELDLLWTRKQNVMYNLFDWPTRRHSRLIVLAIANTMDLPERIMMNRVSSRLGLTRLTFQPYTFRQLQEIVVSRLRGMNAFEEDALELVARKVAALSGDARRCLDICRRAVEIAEEQQQ 931
            P +  R+L   E  S LE AR RLHVSAVP++LPCRE E+ +IY FV+  L + TGGCMYISGVPGTGKTATVHE+IR LQ  +  + VP F++IEVNGM+LT+P+Q + +IL+ LTGQKAT +HAA +L ++F      +E TVLLVDELDLLWT KQ++MYNLFDWPT + +RL+VLAIANTMDLPERIMMNRVSSRLGLTR+ FQPYT+ QLQ+I+ SRL+ + AFE+DA++LVARKVAALSGDARRCLDICRRA EI E  QQ
Sbjct:  472 PQIRSRSLAAQEPASVLEEARLRLHVSAVPESLPCREQEFQDIYNFVESKLLDHTGGCMYISGVPGTGKTATVHEVIRCLQQAAQANDVPPFQYIEVNGMKLTEPHQVYVQILQKLTGQKATANHAAELLAKQFCTRGSPQETTVLLVDELDLLWTHKQDIMYNLFDWPTHKEARLVVLAIANTMDLPERIMMNRVSSRLGLTRMCFQPYTYSQLQQILRSRLKHLKAFEDDAIQLVARKVAALSGDARRCLDICRRATEICEFSQQ 738
The following BLAST results are available for this feature:
BLAST of TCONS_00058450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ORC13.036e-11567.04Origin recognition complex subunit 1 OS=Homo sapie... [more]
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