|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058446 ID=TCONS_00058446|Name=TCONS_00058446|organism=Clytia hemisphaerica|type=transcript|length=3653bpRun BLAST on NCBI transcript from alignment at scaffold_311:495886..510466+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058446 ID=TCONS_00058446|Name=TCONS_00058446|organism=Clytia hemisphaerica|type=transcript|length=14581bp|location=Sequence derived from alignment at scaffold_311:495886..510466+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058446 vs. Swiss-Prot (Human)
Match: PTPRD (Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens GN=PTPRD PE=1 SV=2) HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0 Identity = 428/1246 (34.35%), Postives = 645/1246 (51.77%), Query Frame = 1
Query: 7 LGKFKKYKIWMVAHNKLGKSPPSPEYEIVTKEDVPEGAPRSVQGQALNESTIGVTWLPPKNVLQNGRIIGYKVIYSEWENCEGDDSYEIKFDFTIRGSGARDAVIQKEIF-----PNTNYKVRVAALTSVGTGVESLSLCIKTPVKRPTAPRMTVSTDQTDNIVTLKWWQPP----GKIVGYQITYGKTLNKFDSLINVKTKKVDAQVRLSVFDDLDAGVYYSFRLYGILADNGGLTAPNTHWLKTSDGLPRGPPLYFTVTTESSSSIKLKWEQPDAWLRNGEIVGYEIRYKRDKKDIDWSRKRYGLRGEEDIIV-----YLLQDLKSNTDYQIQIKARTIVGSGTGTKILIARTNREVLPT----VHRLRVEEIEAYNTLLRWDKPRNADKFREFTLKYIISIATNQSFRSTGGQVDYKTSNRTFPTHLTTEYYLDDLTPGTTYKVNVKVDLQDAGIGDPVWFTFTTKSEKPKAVVTPSIVEAKDKGKHIPISIPAVSEEFGAVNHCYLFVIVLDSP--------QIPDNLDTARFLHNQAAVSKRRRREIDSNDDVVAPSDPNSQLPDSYIAGFFKNTELPTVFQLGNGSQHGNIVNQPLKDGKYYTTFVRAFVRPSEDQSHYISADSNFSKPILFTASSISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRKRYGSETDRLLSKKRKGS---CDPTDLHRLHSNAPEMAQHPPIPIDFLAQYVEGLRTNNGAKLLKEFDSINPERELS-EASLLPQNKMKNRYPNVLAYDTTRVKLDHT-GVLCSDYINGNFIDGYCKEKAYISTQGPLKATVEDFWRLCWENNVQTIVMMTRLEERGRSKCEQYWPSGGSEVYGTIKVTIKEEKMYCHYCIRAFEVCSNLTNDTRIVKHFQYLQWPDPGVPLHYGPVLAFIRRVRAFDPPGCGPTVVHCSAGVGRSACFIAIDAMLERLKHDSMIDIYGYVTMMRTQRNFMVQTDEQYIFIYDVLVEAIQHGDTEIASSDLAAVYKTLTELRPNGREPLMEIQFNSLNSALNYYDQTVFSNAHLPVNDSKNRCRTIVPFDHNRVLLQPIYRQENSDYINASYIDGFYQKNSFIATQCPMENTTADFWRMIMEQNSSIIVMLANADEKTKEHSVQYWPSTKTSRHYYYVIDPVQEKRFANFVVREFKITDARDSSFRVIRLYHYHNWNPSTSPTSCEGLLELIGQVQKAQSKSDTHGPVVVHGSTGAGRT 3651
L K+ +Y+I + AH +G P S I T EDVP G PR V+ +A+N +++ V+W P Q+G+I GY+V Y EN E +K D + ++ P T+Y + V A T+ G G S + T P PR+ ++ Q + L W PP G + GY++ +G+ + L ++ + + + D+ G Y FRL + G + + +P G P +S+S++L W+ P RNG I Y + Y+ DI+ L E +IV L LK +T Y ++++A T G G + + RT LP V+ + + LL W+ P N + F + Y G++ + R T+ + +L P +Y + AG + T K+ P+ + + I + +P V + Y+ ++ L + PD ++ L + R+RR I +V YIA F LPT F LG+ +G N+ L+ G+ Y FV A + +E + + A S +S P++ + P G++ ++ +A + ++ +V+ IL++ RKR S + + K S DP +L RL+ P MA HPPIPI LA ++E L+ N+ K +E++SI+P ++ + E S L NK KNRY NV+AYD +RV L G+ SDY+N N+IDGY K+ AYI+TQG L T DFWR+ WE T+VMMT+LEER R KC+QYWPS G+E +G ++VT+ + YC+R F + N +++ R V+ FQ+ WPD GVP H P LAF+RRV+ +PP GP VVHCSAGVGR+ CFI IDAMLER+KH+ +DIYG+VT+MR QRN+MVQT++QYIFI+D L+EA+ G+TE+ + +L A + LT++ ME++F L S+ + + F +A+LP N KNR I+P++ RV LQPI E SDYINAS+IDG+ Q+ ++IATQ P+ TT DFWRM+ E NS+I+VML E +E QYWP+ +++R+ Y+V+DP+ E +++REFK+TDARD R +R + + +W P S EG ++ IGQV K + + GP+ VH S G GRT
Sbjct: 677 LEKWTEYRITVTAHTDVGPGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYVRMENGEPKGQPMLKDVMLADAQWEFDDTTEHDMIISGLQPETSYSLTVTAYTTKGDGARSKPKLVSTTGAVPGKPRLVINHTQMNT--ALIQWHPPVDTFGPLQGYRLKFGR--KDMEPLTTLEFSEKEDHFTAT---DIHKGASYVFRLSA--RNKVGFGEEMVKEISIPEEVPTGFPQNLHSEGTTSTSVQLSWQPPVLAERNGIITKYTLLYR----DINIP-----LLPMEQLIVPADTTMTLTGLKPDTTYDVKVRAHTSKGPGPYSPSVQFRT----LPVDQVFAKNFHVKAVMKTSVLLSWEIPENYNSAMPFKILY------------DDGKMVEEVDGRA------TQKLIVNLKPEKSYSFVLTNRGNSAG---GLQHRVTAKTAPDVLRTKPAFIGKTNLDGMITVQLPEVPANEN-IKGYYIIIVPLKKSRGKFIKPWESPDEMELDELLKEIS----RKRRSIRYGREVEL---------KPYIAAHFD--VLPTEFTLGDDKHYGGFTNKQLQSGQEYVFFVLAVMEHAESKMY---ATSPYSDPVV-------SMDLDPQPITDEEEGLIWVVGPVLAVVFIICIVIAILLYKRKRAESDSRKSSIPNNKEIPSHHPTDPVELRRLNFQTPGMASHPPIPILELADHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERSRVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTEVPARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSR--FISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRT 1851 HSP 2 Score: 217.238 bits (552), Expect = 5.845e-57 Identity = 110/243 (45.27%), Postives = 147/243 (60.49%), Query Frame = 1
Query: 2224 LPQNKMKNRYPNVLAYDTTRVKLDHT-GVLCSDYINGNFIDGYCKEKAYISTQGPLKATVEDFWRLCWENNVQTIVMMTRLEERGRSKCEQYWPSGGSEVYGTIKVTIKEEKMYCHYCIRAFEVCSNLTNDTRIVKHFQYLQWPDPGVPLHYGPVLAFIRRVRAFDPPGC--GPTVVHCSAGVGRSACFIAIDAMLERLKHDSMIDIYGYVTMMRTQRNFMVQTDEQYIFIYDVLVEAIQHGD 2943
LP NK KNR N++ Y++TRV L GV SDYIN +FIDGY ++KAYI+TQGPL T EDFWR+ WE+N +VM+T+L E GR KC QYWP+ S Y V E Y +R F+V +R V+ FQ+ WP+ GVP + FI +V GP VHCSAGVGR+ FI + +LER++++ ++DI+ V M+RTQR MVQT++QY F Y +E + D
Sbjct: 1666 LPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDQYQFSYRAALEYLGSFD 1908 HSP 3 Score: 120.553 bits (301), Expect = 3.195e-27 Identity = 105/394 (26.65%), Postives = 169/394 (42.89%), Query Frame = 1
Query: 4 GLGKFKKYKIWMVAHNKLGKSPPSPEYEIVTKEDVPEGAPRSVQGQALNESTIGVTWLPPKNVLQNGRIIGYKVIYSEWENCEGDDSYEIKFDFTIRGSGARDAVIQKEIFPNTNYKVRVAALTSVGTGVESLSLCIKTPVKRPTAPRMTVSTDQTDNIVTLKWWQP-PGKIVGYQITYGKTLNKFDSLINVKTKKVDAQVRLSVFDDLDAGVYYSFRL-----YGILADNGGLTAPNTHWLKTSDGLPRGPPLYFTVTTESSSSIKLKWEQPDAWLRNGEIVGYEIRYKRDKKDIDWSRKRYGLRGEEDIIVYLLQDLKSNTDYQIQIKARTIVGSGTGTKILIARTNREVLPTVHR-LRVEEIEAYNTLLRWDKP---RNADKFREFTLKYI 1155
GL + Y+ +VA N +G+ PPS T E P APR VQ + L+ +TI V W P+ NG+I GY+V Y+ D + ++ + P Y V+V A TS+G G S + + T P P + +++ + L W P I Y++ Y + + I ++ RL L Y FRL G+ A ++A +T P PP + T+ SS+SI + W+ P +NG I Y I+Y + D + G+ D YLL+ L+ T+Y+I + A T VG G + ++ RTN +V R + VE + + + + W P + + R + + Y+
Sbjct: 382 GLSPYSDYEFRVVAVNNIGRGPPSEPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEE--PNGQIQGYRVYYTM-------DPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEP---GTSYRL---QGLKPNSLYYFRLAARSPQGLGASTAEISA------RTMQSKPSAPPQDISCTSPSSTSILVSWQPPPVEKQNGIITEYSIKYTAVDGEDDKPHEILGI--PSDTTKYLLEQLEKWTEYRITVTAHTDVGPGPESLSVLIRTNEDVPSGPPRKVEVEAVNSTSVKVSWRSPVPNKQHGQIRGYQVHYV 752 The following BLAST results are available for this feature:
BLAST of TCONS_00058446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.