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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058444 ID=TCONS_00058444|Name=TCONS_00058444|organism=Clytia hemisphaerica|type=transcript|length=716bp
atttaagaacattttaggctgaaaattgctaaaaaaaataagcacatcca
ggctcagccaaattttaggtgttctaaaaaaaaaaaaaacgtgtattact
aaagaagaagaaaaatccaAGAAGAAAAATAGTTTGGTTTGTTTGTTGGC
AAAGAAAGAGATATAAAGAAGAAGTATGGGTAGTCAAGCACCACCATACA
ACCCTGCATCAGCACCACAGTACCCACCCACCTCACAACCCTACCCACCA
ACCTCTCAGCCTCAATATGCACCAACCTCTCAACCCTACTACCCACCCAC
TTCTCAACCGCAGTACCCACCTACCTCTCAACCAGGATATGGGTACCCAC
AAAACCAGCAACCACCACCCAGTGGAAAATACCCCGAGCCTCCACCAGGG
TATACTGCTCAACAACCCATGCCTCAACAACATCATCAACAGAGTAGTAT
GACTACAAATTCAACCACCGTCATCATGGCTGGCGGTATGGCTCCACAAC
CGCAAATTGTGCACCAAGCGGCACCACCAAATTACATGGCTTTATCATGG
ATTGTCTGTCTGTTCTTTTGTTGGCCAATTGGTATCGCCGCCATTATGGC
TTCCTCCGGGGTTGATTCGGCCGTAGCAGTTGGCAACTATGCTGAAGCAC
AAAGTCAATCATCACGAGCAAAGGGTCTGGGAATAGCTGGTCTGGTCTGT
GGAATTAtcattattg Run BLAST on NCBI protein sequence of TCONS_00058444-protein >TCONS_00058444-protein ID=TCONS_00058444-protein|Name=TCONS_00058444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MGSQAPPYNPASAPQYPPTSQPYPPTSQPQYAPTSQPYYPPTSQPQYPPT
SQPGYGYPQNQQPPPSGKYPEPPPGYTAQQPMPQQHHQQSSMTTNSTTVI
MAGGMAPQPQIVHQAAPPNYMALSWIVCLFFCWPIGIAAIMASSGVDSAV
AVGNYAEAQSQSSRAKGLGIAGLVCGIIII Run BLAST on NCBI transcript from alignment at scaffold_311:468557..472227+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058444 ID=TCONS_00058444|Name=TCONS_00058444|organism=Clytia hemisphaerica|type=transcript|length=3671bp|location=Sequence derived from alignment at scaffold_311:468557..472227+ (Clytia hemisphaerica)
atttaagaacattttaggctgaaaattgctaaaaaaaataagcacatcca
ggctcagccaaattttaggtgttctaaaaaaaaaaaaaacgtgtattact
aaagaagaagaaaaatccaAGAAGAAAAATAGTTTGGTTTGTTTGTTGGC
AAAGAAAGAGATATAAAGAAGAAGTATGGGTAGTCAAGGTAAAATGTTTA
TACTTATTTAacgaacacccctgtctcaatgaccCGGTGATTTTTTTAGT
GGGGTCGAATGTTAGATTTGATACCAATGCAATGGGGACATAAGATTGCT
TGTTATAACATCTCTCTGTTTTAACGCTATAACGTCAATGGATTTCAAAT
CATGCAGTTTAACATAGCTCGTAAATTAAGTGAGGGTTTTAAGAATTacc
gaaaaaaatattacaagaGGGATGAATACAGCTGATTCTCCATAATCTCC
ATAATCTAATGCTTATTTTAACTTATCATTATCAAGTCAATAAAATATAC
AACAAACAGCCGGCCGGGCACTCAAGATAAGCGACGTTCGAAAGTGCTCT
TCATCAAGGGTTGAAATGAgagataagaaaaataaaaattttttggcaAA
CTTTGGGAAAATCTGAcaatttttagcttaaaataaATAATACAAGAAAT
CGCACCTTTTTCGCTTAAACTTACTCAAgttttgttaaactttttcagCA
CTTTAAACAAATCACACATGCGCTAAATTTTCAGATCGCGTGAGGGAGCA
AACATTGCCTTAGCAATATTCGTAGAATTTTAAATGCAAAGTAATCACCT
CTGTAACGTTAATTGGAAATAATTAAAGGCGTTTTCTTTGTACAGTAAAC
TCTCACTTACccggctggcacacaacgttgttttaatgtccaaataacgt
tatttggacgttgtgaatgtcacatggacgttgttttgacgttgtgtgcc
gtctgggaaTTCAAACTTCTATCATTTAAATCTTTCTATTATTCCCAGTC
CTTGTCAAGGAgaaaaccctcttaaaatactttctacaattcgaatctct
ctgtaaatTGATGAAATAAGATTCCCCGCCCGAGTTCGAGTTAACACAAG
TCACCTGTATTTTGTACATTCTGCTACAATGTGTCCGGAAATCGACAGAg
aatttatcaataaaaatccataataattttgttactttttatgatgtaTT
TGAACAAAGCAAAGTAGGAACTGGAATTTTCTCAGAGGCCCGGGCAAAAA
GGGTTACGGagatgtgccgctggtcagtGTACCATTTTCACCTCCATGAG
TCcaaggtagggtcgcaaaaacgacaaaatagaaaaaagtagCCCGTCGT
AGGCTgcctttttggggaaaatttagaaaatagaGTTAAACTTAAGAAAa
ctttggaatttcagtcccattcaggttcggaaattttggaaaaattttcc
caaaaaacgagtcccacgtggGTTAGCATTTTTTGGACCCCCTGggaatt
ctattgaataaagaagtatttttttctatgaaattgAGAATTTTTACTTT
ATGCAAGATCTTTTCCCTCAGAACCCCGTCGGCCCACACCTAACCATTCC
CTAAAAAACATTATCTTCTTCTTTTAGCACCACCATACAACCCTGCATCA
GCACCACAGTACCCACCCACCTCACAACCCTACCCACCAACCTCTCAGCC
TCAATATGCACCAACCTCTCAACCCTACTACCCACCCACTTCTCAACCGC
AGTACCCACCTACCTCTCAACCAGGATATGGGTACCCACAAAACCAGCAA
CCACCACCCAGTGGAAAATACCCCGAGCCTCCACCAGGGTATACTGCTCA
ACAACCCATGCCTCAACAACATGTAAGTAgaaactttttattatttttgg
ttgTGTAGTGTTCTCTACTGAAgggcttcatttttctttttcctagggCT
AGATAATAAGTTAGAAGGGGTTGAAGCCGGAgtacaggcccggcggaagc
ggggagcctggggagacttcagcctcctcacttttaagaaaatgagattt
tttatcaaattcctagcaaatttctcattttgagccttcagtcTCCCCAA
TCTTAccgttgttccgccgggcctggaGTAAGGATCTTTTCAATATCCAT
CTatcattttttttcgtcactttcaaCGCTGTACTTATAATCATGACTGC
AATCAGGCAATTAACATGGCAGATAGCCGTTTACTAAATTAACATAAAAG
CTCAACTATTCCAAAGGAGAGACACAAGTTTCTGAACAGATAGTTATAAG
AAAAACTCTATAAATTATCTCACCTTCCTTTTTTAGCGCCTTTGTCTAGT
CCTACTAATCTAGACAAGTAGCAAGGTTTTTTAGCATTGAATTCATCTCC
GACTACATAAACCAAATCTCAGCTGCCACAGTGCACAGAGAACGTCGTTA
AAATATCCAGCTGAGGTCCctgatgaacgttgaaacgtgtgtcagctggg
attACTCAACATTGATAATTTACTTCTTTTCCCAGGAAAGGAATATTTGG
CCACTAAGATTTTGATGTTCACACCGTCCATAGAAAGTCTAAGAAACGtt
caaacaacgttgtgtaccagctgggtttTTTTTTCTGGTTTAAAATTTGA
TAATCCTTTTTCTCTCTAGCATCAACAGAGTAGTATGACTACAAATTCAA
CCACCGTCATCATGGCTGGCGGTATGGCTCCACAACCGCAAATTGTGCAC
CAAGCGGCACCACCAAATTACATGGCTTTATCATGGATTGTCTGTCTGTT
CTTTTGTTGGCCAATTGGTATCGCCGCCATTATGGCTTCCTCCGGGGTAA
GTTAAAGACTGTAGTTTACTGTTTGTTAATTGATGAAAACTAATGAAAGC
CTAGCTTCTGATGATGAAAAGCTTTTTGCTAAACCCtatgtaaaaaacaa
aaaaaatatataaactcgACCAATGAtggcttcaaaaagttttgccgAAC
GTGTCGCAATTTTATTCCCGGTCACGGAAAATCATGCAATGTACCTATTA
AGCTAATGAAATGCATTATGGGTTGACTCACTAAATCATTTCATCCACTA
AGCAGACGCAATTTATCCTTAATGATTTAAACCAtggttctttattttca
ctcaGTTCTGACGTTATGTCACTGGCAAAAATTAGGATCCCCAAGTTAAG
ATCTTTAAAACGTCAAACGATGGGTGTTGTAAACAGGGATGGTAAATTAC
ATCATCACATGTCTCACAGCCACCTAGACAGGATCTAGACATTTTATTGT
CCCTAATCGAAAATtctctacatgttttttttttatattgaatttcaaat
agggATGGAAATACTGCTAAtagggctgaaattgtagggtatttgtCTCA
CCGAGAACGGAATTTCTGCTAATTTTTCCGGTGGGGCGCACCCCTGGGAC
ACATGAGTGTcaaattgaaaatgcttcaaaatatcaaaagtcATTTCTGT
TGNACATGAGTGTCAAATTGAAATTGcttcaaaacatcaaaacattacTT
CTGTTGTTTTTACAGGTTGATTCGGCCGTAGCAGTTGGCAACTATGCTGA
AGCACAAAGTCAATCATCACGAGCAAAGGGTCTGGGAATAGCTGGTCTGG
TCTGTGGAATTAtcattattg Coding sequence (CDS) from alignment at scaffold_311:468557..472227+ >TCONS_00058444 ID=TCONS_00058444|Name=TCONS_00058444|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_311:468557..472227+ (Clytia hemisphaerica)
ATGGGTAGTCAAGCACCACCATACAACCCTGCATCAGCACCACAGTACCC
ACCCACCTCACAACCCTACCCACCAACCTCTCAGCCTCAATATGCACCAA
CCTCTCAACCCTACTACCCACCCACTTCTCAACCGCAGTACCCACCTACC
TCTCAACCAGGATATGGGTACCCACAAAACCAGCAACCACCACCCAGTGG
AAAATACCCCGAGCCTCCACCAGGGTATACTGCTCAACAACCCATGCCTC
AACAACATCATCAACAGAGTAGTATGACTACAAATTCAACCACCGTCATC
ATGGCTGGCGGTATGGCTCCACAACCGCAAATTGTGCACCAAGCGGCACC
ACCAAATTACATGGCTTTATCATGGATTGTCTGTCTGTTCTTTTGTTGGC
CAATTGGTATCGCCGCCATTATGGCTTCCTCCGGGGTTGATTCGGCCGTA
GCAGTTGGCAACTATGCTGAAGCACAAAGTCAATCATCACGAGCAAAGGG
TCTGGGAATAGCTGGTCTGGTCTGTGGAATTAtcattattATGGGTAGTC
AAGCACCACCATACAACCCTGCATCAGCACCACAGTACCCACCCACCTCA
CAACCCTACCCACCAACCTCTCAGCCTCAATATGCACCAACCTCTCAACC
CTACTACCCACCCACTTCTCAACCGCAGTACCCACCTACCTCTCAACCAG
GATATGGGTACCCACAAAACCAGCAACCACCACCCAGTGGAAAATACCCC
GAGCCTCCACCAGGGTATACTGCTCAACAACCCATGCCTCAACAACATCA
TCAACAGAGTAGTATGACTACAAATTCAACCACCGTCATCATGGCTGGCG
GTATGGCTCCACAACCGCAAATTGTGCACCAAGCGGCACCACCAAATTAC
ATGGCTTTATCATGGATTGTCTGTCTGTTCTTTTGTTGGCCAATTGGTAT
CGCCGCCATTATGGCTTCCTCCGGGGTTGATTCGGCCGTAGCAGTTGGCA
ACTATGCTGAAGCACAAAGTCAATCATCACGAGCAAAGGGTCTGGGAATA
GCTGGTCTGGTCTGTGGAATTAtcattattATGGGTAGTCAAGCACCACC
ATACAACCCTGCATCAGCACCACAGTACCCACCCACCTCACAACCCTACC
CACCAACCTCTCAGCCTCAATATGCACCAACCTCTCAACCCTACTACCCA
CCCACTTCTCAACCGCAGTACCCACCTACCTCTCAACCAGGATATGGGTA
CCCACAAAACCAGCAACCACCACCCAGTGGAAAATACCCCGAGCCTCCAC
CAGGGTATACTGCTCAACAACCCATGCCTCAACAACATCATCAACAGAGT
AGTATGACTACAAATTCAACCACCGTCATCATGGCTGGCGGTATGGCTCC
ACAACCGCAAATTGTGCACCAAGCGGCACCACCAAATTACATGGCTTTAT
CATGGATTGTCTGTCTGTTCTTTTGTTGGCCAATTGGTATCGCCGCCATT
ATGGCTTCCTCCGGGGTTGATTCGGCCGTAGCAGTTGGCAACTATGCTGA
AGCACAAAGTCAATCATCACGAGCAAAGGGTCTGGGAATAGCTGGTCTGG
TCTGTGGAATTAtcattattATGGGTAGTCAAGCACCACCATACAACCCT
GCATCAGCACCACAGTACCCACCCACCTCACAACCCTACCCACCAACCTC
TCAGCCTCAATATGCACCAACCTCTCAACCCTACTACCCACCCACTTCTC
AACCGCAGTACCCACCTACCTCTCAACCAGGATATGGGTACCCACAAAAC
CAGCAACCACCACCCAGTGGAAAATACCCCGAGCCTCCACCAGGGTATAC
TGCTCAACAACCCATGCCTCAACAACATCATCAACAGAGTAGTATGACTA
CAAATTCAACCACCGTCATCATGGCTGGCGGTATGGCTCCACAACCGCAA
ATTGTGCACCAAGCGGCACCACCAAATTACATGGCTTTATCATGGATTGT
CTGTCTGTTCTTTTGTTGGCCAATTGGTATCGCCGCCATTATGGCTTCCT
CCGGGGTTGATTCGGCCGTAGCAGTTGGCAACTATGCTGAAGCACAAAGT
CAATCATCACGAGCAAAGGGTCTGGGAATAGCTGGTCTGGTCTGTGGAAT
TAtcattatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058444-exon-scaffold_311-1491911889:468557..468744 | TCONS_00058444-exon-scaffold_311-1491911889:468557..468744 | Clytia hemisphaerica | exon |
| TCONS_00058444-exon-scaffold_311-1510915933:468557..468744 | TCONS_00058444-exon-scaffold_311-1510915933:468557..468744 | Clytia hemisphaerica | exon |
| TCONS_00058444-exon-scaffold_311-1575043694:468557..468744 | TCONS_00058444-exon-scaffold_311-1575043694:468557..468744 | Clytia hemisphaerica | exon |
| TCONS_00058444-exon-scaffold_311-1491911889:470184..470428 | TCONS_00058444-exon-scaffold_311-1491911889:470184..470428 | Clytia hemisphaerica | exon |
| TCONS_00058444-exon-scaffold_311-1510915933:470184..470428 | TCONS_00058444-exon-scaffold_311-1510915933:470184..470428 | Clytia hemisphaerica | exon |
| TCONS_00058444-exon-scaffold_311-1575043694:470184..470428 | TCONS_00058444-exon-scaffold_311-1575043694:470184..470428 | Clytia hemisphaerica | exon |
| TCONS_00058444-exon-scaffold_311-1491911889:471226..471402 | TCONS_00058444-exon-scaffold_311-1491911889:471226..471402 | Clytia hemisphaerica | exon |
| TCONS_00058444-exon-scaffold_311-1510915933:471226..471402 | TCONS_00058444-exon-scaffold_311-1510915933:471226..471402 | Clytia hemisphaerica | exon |
| TCONS_00058444-exon-scaffold_311-1575043694:471226..471402 | TCONS_00058444-exon-scaffold_311-1575043694:471226..471402 | Clytia hemisphaerica | exon |
| TCONS_00058444-exon-scaffold_311-1491911889:472122..472227 | TCONS_00058444-exon-scaffold_311-1491911889:472122..472227 | Clytia hemisphaerica | exon |
| TCONS_00058444-exon-scaffold_311-1510915933:472122..472227 | TCONS_00058444-exon-scaffold_311-1510915933:472122..472227 | Clytia hemisphaerica | exon |
| TCONS_00058444-exon-scaffold_311-1575043694:472122..472227 | TCONS_00058444-exon-scaffold_311-1575043694:472122..472227 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:468557..472227 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007593 | CD225/Dispanin_fam |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009607 | response to biotic stimulus |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009607 |
response to biotic stimulus |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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