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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058422 ID=TCONS_00058422|Name=TCONS_00058422|organism=Clytia hemisphaerica|type=transcript|length=1019bp
TTTTAGTCTTCCATACACTTACTTTGTCGGTTATATTAACGGCTTTGTTT
CTTTTTAGGTCTTATGTCGAGACTGCAGAGAGgAGAGTTTGACTGCTTTC
CACGTGGTCGGTTTGAAGTGTTTGAAATGTGGAGGTTACAACACCACCAG
GATAGGAGGAGATGAACCTCTACCAGAAGACCCTCTCGAAACATTACAAG
AAACGGTGCGCGCTATCAACCTCCGACATCAAAACGAAGAAGGGGGAGCG
GGAGAGGATGATGAGTTTGATGAAGGATCATGGGAAACAGTCAccgatga
agaagaagaagctgGGGAGAGTGAAGAGAGTGAAAACGAGGCTGGTGGTG
ataacgaaagtgaaagtatgAGAACTGAAAATGAGACTTTGGAAATGGAG
CATGATAATAATGGTGGAGGATGTGAAAATACAGACACTGTTGCTATTGA
AGAGGCGGATACAAGTAATGCGGGCTCTGAGGACATTAATCATCAGATGA
ATTCTTGACGCACTTCTTTATTGTGAGCGAGCTGACACCGCTGACACATA
ACGCTGTTTCAACGTTTTAAGAGGCCCCcgagcggttttcgtgatgacgt
gatagggacttttttgcagcgtgattacgtgatttggaaattttttcaaa
gggatgcgtgattgtCAAGAGAGAGGTCAATATGTGATCGTGTTTTGAAC
GATTTTTGAGCCGAgatacgtgatttggacttttcaaagggatgcgtgat
tgtCCATTTCttttgctgatttgcgtgatcctgtttgaagacaaaaaatt
gtgtgatatcgtgatcagagttaccgctgggggggggggctcttctAATG
ATGTAcgcccatataacgttagatgaacgttgaaacaacgtgtCAAATTC
GAAGAATGTTAGTTAGAATTGAGCAAAGCACGTTTAGAATACAGATTTTC
GCGAAATCCTCTTATTTAAAACAAGTTGACTTAAATGGTTCTTTCGAGAC
TTTTTTGGTTTTAATctga Run BLAST on NCBI transcript from alignment at scaffold_311:53936..56095+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058422 ID=TCONS_00058422|Name=TCONS_00058422|organism=Clytia hemisphaerica|type=transcript|length=2160bp|location=Sequence derived from alignment at scaffold_311:53936..56095+ (Clytia hemisphaerica)
TTTTAGTCTTCCATACACTTACTTTGTCGGTTATATTAACGGCTTTGTTT
CTTTTTAGGTCTTATGTCGAGACTGCAGAGAGGTATTTATATTACATTCT
CAAATGAATTATTCCAGTACTACAATATTCATCTATCGTTGCATTATAGA
TTATAATGCTCGGCCAATAGAATgcctcattttcatttgtttttgttttt
ttttcacccggTTGTCGTCGCTCCTCGGGTCTCAGTGTATAAATGGTGTG
GTGGTAACTCTGTTATAAGAATATAatctgattaattttcgcgagatatA
ATTTCATGAGccaaaaaatcgggaaattttctTAGGCGAAAAGATTTGTT
GAAAGTAGGCTGTAAACGTCATAAGTAACTCATTTACAGTGTTTTTCAGT
CTTTCGTTCCATGAGAATTTCGCGATTCTGCGATCTCAGGCCGCGCTTTC
GCGATTTTATTTTTACGAAAATGACAAAGATTTGCGAAAACGCGAAGTTA
AATCTAGTGAAAATTTATCCGATTAAAGTATCAGCTTCACAGCGTATTTT
CCTTATATTCCACttgttcttttgtttcaggAGAGTTTGACTGCTTTCCA
CGTGGTCGGTTTGAAGTGTTTGAAATGTGGAGGTTACAACACCACCAGGA
TAGGAGGTTCGTGATTCATTATTCTTGTCACCATTCGCgtcttacacttt
ttttataagaacatccaaaatttttgaggccttgggatattcttaacttt
ttgagtttaaaaggtttcatttttaagcctaaaaacgttcttatttcacc
attttcaccagagtccgcaaagcctttaaTGTTTTTAACTGGTTCGTAAT
ATTTTGGaaatcgaagctttatgttcttatatagtttgttcgtataaaaa
ataaagagcATCTTAAGAACACTTTCAGGCTttaaggtttcaaaaatttt
ggacgttcttataaaaaaagcctaGGATAAGTTCTCAGCATTAGGTGAAA
AAGTTTTGTCGTTTGAAAAACCtgatcggccctttttacgatGGCCCTTA
TCGACGTTATTTTTCGTCACTgtcgtaataagggccggcttAAGGAATCG
GAATCGGAATTAAATCAGGGCCGGtctagccagtaccttcccaaaaatgc
gataaaaaatgttcgtctaacaggctagggccttgttaaaaaattaagaa
attaggCTTTGGTGTTATAAGAGCTGGCGTAAAAGAGGCCGGCGCTAAGT
TAGGACCGGTGTATAAAGGTATTTGACATTTGTGTACTCTGTTTTGTAGG
AGATGAACCTCTACCAGAAGACCCTCTCGAAACATTACAAGAAACGGTGC
GCGCTATCAACCTCCGACATCAAAACGAAGAAGGGGGAGCGGGAGAGGAT
GATGAGTTTGATGAAGGATCATGGGAAACAGTCAccgatgaagaagaaga
agctgGGGAGAGTGAAGAGAGTGAAAACGAGGCTGGTGGTGataacgaaa
gtgaaagtatgAGAACTGAAAATGAGACTTTGGAAATGGAGCATGATAAT
AATGGTGGAGGATGTGAAAATACAGACACTGTTGCTATTGAAGAGGCGGA
TACAAGTAATGCGGGCTCTGAGGACATTAATCATCAGATGAATTCTTGAC
GCACTTCTTTATTGTGAGCGAGCTGACACCGCTGACACATAACGCTGTTT
CAACGTTTTAAGAGGCCCCcgagcggttttcgtgatgacgtgatagggac
ttttttgcagcgtgattacgtgatttggaaattttttcaaagggatgcgt
gattgtCAAGAGAGAGGTCAATATGTGATCGTGTTTTGAACGATTTTTGA
GCCGAgatacgtgatttggacttttcaaagggatgcgtgattgtCCATTT
Cttttgctgatttgcgtgatcctgtttgaagacaaaaaattgtgtgatat
cgtgatcagagttaccgctgggggggggggctcttctAATGATGTAcgcc
catataacgttagatgaacgttgaaacaacgtgtCAAATTCGAAGAATGT
TAGTTAGAATTGAGCAAAGCACGTTTAGAATACAGATTTTCGCGAAATCC
TCTTATTTAAAACAAGTTGACTTAAATGGTTCTTTCGAGACTTTTTTGGT
TTTAATctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058422-exon-scaffold_311-1491911889:53936..54017 | TCONS_00058422-exon-scaffold_311-1491911889:53936..54017 | Clytia hemisphaerica | exon |
| TCONS_00058422-exon-scaffold_311-1510915933:53936..54017 | TCONS_00058422-exon-scaffold_311-1510915933:53936..54017 | Clytia hemisphaerica | exon |
| TCONS_00058422-exon-scaffold_311-1575043694:53936..54017 | TCONS_00058422-exon-scaffold_311-1575043694:53936..54017 | Clytia hemisphaerica | exon |
| TCONS_00058422-exon-scaffold_311-1491911889:54516..54591 | TCONS_00058422-exon-scaffold_311-1491911889:54516..54591 | Clytia hemisphaerica | exon |
| TCONS_00058422-exon-scaffold_311-1510915933:54516..54591 | TCONS_00058422-exon-scaffold_311-1510915933:54516..54591 | Clytia hemisphaerica | exon |
| TCONS_00058422-exon-scaffold_311-1575043694:54516..54591 | TCONS_00058422-exon-scaffold_311-1575043694:54516..54591 | Clytia hemisphaerica | exon |
| TCONS_00058422-exon-scaffold_311-1491911889:55235..56095 | TCONS_00058422-exon-scaffold_311-1491911889:55235..56095 | Clytia hemisphaerica | exon |
| TCONS_00058422-exon-scaffold_311-1510915933:55235..56095 | TCONS_00058422-exon-scaffold_311-1510915933:55235..56095 | Clytia hemisphaerica | exon |
| TCONS_00058422-exon-scaffold_311-1575043694:55235..56095 | TCONS_00058422-exon-scaffold_311-1575043694:55235..56095 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:53936..56095 + |
Blast
The following BLAST results are available for this feature:
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