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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058415 ID=TCONS_00058415|Name=TCONS_00058415|organism=Clytia hemisphaerica|type=transcript|length=1091bp
TTAATATCCCAAGCTGGTCCAGTATACCTCGGGAAATAAACAATGACTGC
TGTAGGTAATTGTGGAGGTGATGTGCctttttcatataaaattgCTTTCA
CAATACCAACAAGCCATAGGGGGTAAACGCTTTTTggttttttgtcaata
taactTTCGAATTAACTGCGATTGTGGCTTTAGGTGgtatttgaccaact
tgtttaTCTCCATTCTTGTGATGATAACCTCGACCTGTAGATGGTATTGT
GGCAACAGGAACATTTAAGTTGGCTAAATTCTTTCGGTTTTCTTTATTCA
CCTCACGCCAAGTTTCATGCAATGTTATTGTTATTTCAGCATTGCAGTAA
TTCATCTTTTCAGCCTCGGGAAGCTCTTTTTCGTATCTGGCATTTACAGC
AAGCCAGTCTTGTTGTGTGATTCTACCACCTCTAATTCTTAGTAACCTTT
CAAGAAACACTTTTTCACACTCTTTCTGTCGCATTGTCTGTGAAAGTTTC
GGTAAATGGCAAACCCGGCAAGCTCATCAGGTGAAGCATTCTTTGCAGCG
CGGAGATGAAGATCTAACTTTTTGACTGGCCCAAGCTGGCCAAGATCACC
AAAAAAGTTCATAACTGGAATCGCTCCGAAGGTATTGTCACAATTATTTG
TGGCTTGGGAAAATCTTTCACTTATCCATCCAAGGAGTCCTTTTGAAAAC
ATGCTACGTTCATCCATATTTAAAACAGCCAATTcaagttctttattttt
ataaccAATAGTCTCACAAAGCTTTTTCAAAGCCTTTCCCTTTAATGGGT
AATCACTCATTTGGGCTGACTTGAGATCATTTGTTTTAGATTTCGAAAGA
GGAGGTGTGGTGGAGTGAACTGTCCGACCACCAGGGAGAAGCAAACTTGC
TGTTCCAGTAGGAGCCAGATTCAACACTGCATTATTTCTTTGACGTAATC
TCCTTGCTATAAAACTAATTGAATTTATGACAAAAGTTTTACCTGTACCT
GCAGTCCCCTGTACCAATAATCGTAACGGTTCATAGTTCTCCCCTTTCTG
GAGTAAAATCATACGTTCTAGATTTATTGCTATTATTAGTC Run BLAST on NCBI protein sequence of TCONS_00058415-protein >TCONS_00058415-protein ID=TCONS_00058415-protein|Name=TCONS_00058415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
LIIAINLERMILLQKGENYEPLRLLVQGTAGTGKTFVINSISFIARRLRQ
RNNAVLNLAPTGTASLLLPGGRTVHSTTPPLSKSKTNDLKSAQMSDYPLK
GKALKKLCETIGYKNKELELAVLNMDERSMFSKGLLGWISERFSQATNNC
DNTFGAIPVMNFFGDLGQLGPVKKLDLHLRAAKNASPDELAGFAIYRNFH
RQCDRKSVKKCFLKGY Run BLAST on NCBI transcript from alignment at scaffold_310:145237..146327 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058415 ID=TCONS_00058415|Name=TCONS_00058415|organism=Clytia hemisphaerica|type=transcript|length=1091bp|location=Sequence derived from alignment at scaffold_310:145237..146327 (Clytia hemisphaerica)
GACTAATAATAGCAATAAATCTAGAACGTATGATTTTACTCCAGAAAGGG
GAGAACTATGAACCGTTACGATTATTGGTACAGGGGACTGCAGGTACAGG
TAAAACTTTTGTCATAAATTCAATTAGTTTTATAGCAAGGAGATTACGTC
AAAGAAATAATGCAGTGTTGAATCTGGCTCCTACTGGAACAGCAAGTTTG
CTTCTCCCTGGTGGTCGGACAGTTCACTCCACCACACCTCCTCTTTCGAA
ATCTAAAACAAATGATCTCAAGTCAGCCCAAATGAGTGATTACCCATTAA
AGGGAAAGGCTTTGAAAAAGCTTTGTGAGACTATTggttataaaaataaa
gaacttgAATTGGCTGTTTTAAATATGGATGAACGTAGCATGTTTTCAAA
AGGACTCCTTGGATGGATAAGTGAAAGATTTTCCCAAGCCACAAATAATT
GTGACAATACCTTCGGAGCGATTCCAGTTATGAACTTTTTTGGTGATCTT
GGCCAGCTTGGGCCAGTCAAAAAGTTAGATCTTCATCTCCGCGCTGCAAA
GAATGCTTCACCTGATGAGCTTGCCGGGTTTGCCATTTACCGAAACTTTC
ACAGACAATGCGACAGAAAGAGTGTGAAAAAGTGTTTCTTGAAAGGTTAC
TAAGAATTAGAGGTGGTAGAATCACACAACAAGACTGGCTTGCTGTAAAT
GCCAGATACGAAAAAGAGCTTCCCGAGGCTGAAAAGATGAATTACTGCAA
TGCTGAAATAACAATAACATTGCATGAAACTTGGCGTGAGGTGAATAAAG
AAAACCGAAAGAATTTAGCCAACTTAAATGTTCCTGTTGCCACAATACCA
TCTACAGGTCGAGGTTATCATCACAAGAATGGAGAtaaacaagttggtca
aatacCACCTAAAGCCACAATCGCAGTTAATTCGAAagttatattgacaa
aaaaccAAAAAGCGTTTACCCCCTATGGCTTGTTGGTATTGTGAAAGcaa
ttttatatgaaaaagGCACATCACCTCCACAATTACCTACAGCAGTCATT
GTTTATTTCCCGAGGTATACTGGACCAGCTTGGGATATTAA Coding sequence (CDS) from alignment at scaffold_310:145237..146327 >TCONS_00058415 ID=TCONS_00058415|Name=TCONS_00058415|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_310:145237..146327 (Clytia hemisphaerica)
CTAATAATAGCAATAAATCTAGAACGTATGATTTTACTCCAGAAAGGGGA
GAACTATGAACCGTTACGATTATTGGTACAGGGGACTGCAGGTACAGGTA
AAACTTTTGTCATAAATTCAATTAGTTTTATAGCAAGGAGATTACGTCAA
AGAAATAATGCAGTGTTGAATCTGGCTCCTACTGGAACAGCAAGTTTGCT
TCTCCCTGGTGGTCGGACAGTTCACTCCACCACACCTCCTCTTTCGAAAT
CTAAAACAAATGATCTCAAGTCAGCCCAAATGAGTGATTACCCATTAAAG
GGAAAGGCTTTGAAAAAGCTTTGTGAGACTATTggttataaaaataaaga
acttgAATTGGCTGTTTTAAATATGGATGAACGTAGCATGTTTTCAAAAG
GACTCCTTGGATGGATAAGTGAAAGATTTTCCCAAGCCACAAATAATTGT
GACAATACCTTCGGAGCGATTCCAGTTATGAACTTTTTTGGTGATCTTGG
CCAGCTTGGGCCAGTCAAAAAGTTAGATCTTCATCTCCGCGCTGCAAAGA
ATGCTTCACCTGATGAGCTTGCCGGGTTTGCCATTTACCGAAACTTTCAC
AGACAATGCGACAGAAAGAGTGTGAAAAAGTGTTTCTTGAAAGGTTACTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058415-exon-scaffold_310-1491911889:145237..146327 | TCONS_00058415-exon-scaffold_310-1491911889:145237..146327 | Clytia hemisphaerica | exon |
| TCONS_00058415-exon-scaffold_310-1510915933:145237..146327 | TCONS_00058415-exon-scaffold_310-1510915933:145237..146327 | Clytia hemisphaerica | exon |
| TCONS_00058415-exon-scaffold_310-1575043694:145237..146327 | TCONS_00058415-exon-scaffold_310-1575043694:145237..146327 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_310 | supercontig | scaffold_310:145237..146327 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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