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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058414 ID=TCONS_00058414|Name=TCONS_00058414|organism=Clytia hemisphaerica|type=transcript|length=1001bp
TGGAGGAAAAGGAGTATTGAGAATCAGCTTGTGACTCTTGATTTGCATTA
TCATTGTGCTGTTCATTTAGCTTGTGCCTTCTTTTACGTTCTCTCTCCAT
TTTTTCATCATATCTCTTTTTCGCTGATTTCACATTATCTTTAACAACAC
GTGGGCATTGATCTGTATCAAGAAAGCGTGCAAAAGCTTCACCAAAAGTT
TCTTCTTCTAGCTTCAAATCTTCAGGTTTTGTCCATACTCCTTTACAGTA
GCTTTCTAAGAGTGGCCAGACAGGATTCACTTGGATACCTGTGAAAACTG
GGCAGTGATCAGCAGCGCATTTGGTTCTGCAAGAACATTCTCTCACCCAA
TCATATAAGGTCATTGTAGGATTCTTTTCTCTACGCTCATTACTTAGAAA
CTTATCGATATCAATTTTTTGAGTGAAGTTTTCACCATCAGGCTTACTGC
TAAGAGGTCTATAACCACTCAAACCAACAGATTGAAACTTTCTAGTACAA
TGCCACAGTTTGCCACCAGAATTGATAAAGTCACAACAAGCAGCAGGTGT
ATCAATTTTACCAAGTATCCTATTAAGCAGTCTTAATACGATACTTTTAA
CTGAAGCATTGGGATCTGCACTGTCTAAAAGATGACCATAGATAGTGACC
AAATCCTGTGTTGCGGCAGCACCTTTGCACGCGTAAGAAGtgatatattt
ttgtaaatttaacAAATCTTGATCAACCAGAGCCTGAGTATCGCAGTTGG
CCAACCAGGATAATAAATGAGCTTTTACATTATCATCCTGCAATGGTCTC
TGGGGCCCTCATACCTTGGATGCTTATCTCCAGTTAGAATTGGGTCGAAA
GGATGTAGTTCTTTTCCTGGTGTTTTTTTAGTTATGGGATCTTCTTTTCC
AAAATGTACCCTACAATATCGTGTATCAGAGTcaactctttttcttttca
gacaATAGTCATTACAATTATGTAATGCTACTCGATTCACAAGATAAAGA
T Run BLAST on NCBI protein sequence of TCONS_00058414-protein >TCONS_00058414-protein ID=TCONS_00058414-protein|Name=TCONS_00058414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MTLYDWVRECSCRTKCAADHCPVFTGIQVNPVWPLLESYCKGVWTKPEDL
KLEEETFGEAFARFLDTDQCPRVVKDNVKSAKKRYDEKMERERKRRHKLN
EQHNDNANQESQADSQYSFSS Run BLAST on NCBI transcript from alignment at scaffold_310:143936..144936 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058414 ID=TCONS_00058414|Name=TCONS_00058414|organism=Clytia hemisphaerica|type=transcript|length=1001bp|location=Sequence derived from alignment at scaffold_310:143936..144936 (Clytia hemisphaerica)
ATCTTTATCTTGTGAATCGAGTAGCATTACATAATTGTAATGACTATtgt
ctgaaaagaaaaagagttgACTCTGATACACGATATTGTAGGGTACATTT
TGGAAAAGAAGATCCCATAACTAAAAAAACACCAGGAAAAGAACTACATC
CTTTCGACCCAATTCTAACTGGAGATAAGCATCCAAGGTATGAGGGCCCC
AGAGACCATTGCAGGATGATAATGTAAAAGCTCATTTATTATCCTGGTTG
GCCAACTGCGATACTCAGGCTCTGGTTGATCAAGATTTgttaaatttaca
aaaatatatcaCTTCTTACGCGTGCAAAGGTGCTGCCGCAACACAGGATT
TGGTCACTATCTATGGTCATCTTTTAGACAGTGCAGATCCCAATGCTTCA
GTTAAAAGTATCGTATTAAGACTGCTTAATAGGATACTTGGTAAAATTGA
TACACCTGCTGCTTGTTGTGACTTTATCAATTCTGGTGGCAAACTGTGGC
ATTGTACTAGAAAGTTTCAATCTGTTGGTTTGAGTGGTTATAGACCTCTT
AGCAGTAAGCCTGATGGTGAAAACTTCACTCAAAAAATTGATATCGATAA
GTTTCTAAGTAATGAGCGTAGAGAAAAGAATCCTACAATGACCTTATATG
ATTGGGTGAGAGAATGTTCTTGCAGAACCAAATGCGCTGCTGATCACTGC
CCAGTTTTCACAGGTATCCAAGTGAATCCTGTCTGGCCACTCTTAGAAAG
CTACTGTAAAGGAGTATGGACAAAACCTGAAGATTTGAAGCTAGAAGAAG
AAACTTTTGGTGAAGCTTTTGCACGCTTTCTTGATACAGATCAATGCCCA
CGTGTTGTTAAAGATAATGTGAAATCAGCGAAAAAGAGATATGATGAAAA
AATGGAGAGAGAACGTAAAAGAAGGCACAAGCTAAATGAACAGCACAATG
ATAATGCAAATCAAGAGTCACAAGCTGATTCTCAATACTCCTTTTCCTCC
A Coding sequence (CDS) from alignment at scaffold_310:143936..144936 >TCONS_00058414 ID=TCONS_00058414|Name=TCONS_00058414|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_310:143936..144936 (Clytia hemisphaerica)
ATGACCTTATATGATTGGGTGAGAGAATGTTCTTGCAGAACCAAATGCGC
TGCTGATCACTGCCCAGTTTTCACAGGTATCCAAGTGAATCCTGTCTGGC
CACTCTTAGAAAGCTACTGTAAAGGAGTATGGACAAAACCTGAAGATTTG
AAGCTAGAAGAAGAAACTTTTGGTGAAGCTTTTGCACGCTTTCTTGATAC
AGATCAATGCCCACGTGTTGTTAAAGATAATGTGAAATCAGCGAAAAAGA
GATATGATGAAAAAATGGAGAGAGAACGTAAAAGAAGGCACAAGCTAAAT
GAACAGCACAATGATAATGCAAATCAAGAGTCACAAGCTGATTCTCAATA
CTCCTTTTCCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058414-exon-scaffold_310-1491911889:143936..144936 | TCONS_00058414-exon-scaffold_310-1491911889:143936..144936 | Clytia hemisphaerica | exon |
| TCONS_00058414-exon-scaffold_310-1510915933:143936..144936 | TCONS_00058414-exon-scaffold_310-1510915933:143936..144936 | Clytia hemisphaerica | exon |
| TCONS_00058414-exon-scaffold_310-1575043694:143936..144936 | TCONS_00058414-exon-scaffold_310-1575043694:143936..144936 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_310 | supercontig | scaffold_310:143936..144936 . |
Blast
The following BLAST results are available for this feature:
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