TCONS_00058407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058407
Unique NameTCONS_00058407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058407 ID=TCONS_00058407|Name=TCONS_00058407|organism=Clytia hemisphaerica|type=transcript|length=812bp
TTTGTGAAGCTATTGCAAAGGTAATCGAatgtttaaattaaaaaattcga
atgtttcataagaattcgaatgtttatAAAAACTTCGAATGTTTACTGTA
TGTAATNAAGATATCATAACATTTTTTATCATCAAGCATATGAATGTACG
TGTACGGTAATTAATATATTGTACTTGAACAAGTTGTTTTAGCTGACTTG
ATTATGCTGGGTATGGCTGTTCTAGCTGATCCATTCCAGAATAATCTTGA
ATTTAGGAAAATNTCTataaaaagacaaatttattctatgcaacatttca
agttaaagcttttgatttaaaattgcGATTCAAAATAGTGATTTAGGTGT
ACTTTTTGCTTGACATGTTGATATGTTTAGTTGAAGAAACacagtaccgt
gagtggtcctaaatccgacatccctgcctaaatccgatggggtctttcaa
agatacaaactaaaataaaaacaaacctttcgctgtNAGTGTGTTTTTGG
TAGCTGCAATGCAAGCAGTCACATCACAATCAATTCTGATATCAATACAA
TCAATAAAACCATCATGATACTTTTATAGCTGGTGCTGGTGGGAGGCAGG
GAGGAGCTAGCCTATTTTGAATATTCTGCTTCTTGATATTTGTCGGTTTG
TTGGATGGAAAAACACCAGGATGAAAAACAGCAGTACTTTTCATGTTGTT
GATAATTTCAAAGCAAATTGAATCAATTCAATCTAGTCAAGGCAGCAAGA
AAAGCCCTGCAAATCAGTCACACCACAAATGTTTCCagatttttggtttt
gttgacaaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_310:92814..93625

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058407 ID=TCONS_00058407|Name=TCONS_00058407|organism=Clytia hemisphaerica|type=transcript|length=812bp|location=Sequence derived from alignment at scaffold_310:92814..93625 (Clytia hemisphaerica)
atttttgtcaacaaaaccaaaaatctGGAAACATTTGTGGTGTGACTGAT
TTGCAGGGCTTTTCTTGCTGCCTTGACTAGATTGAATTGATTCAATTTGC
TTTGAAATTATCAACAACATGAAAAGTACTGCTGTTTTTCATCCTGGTGT
TTTTCCATCCAACAAACCGACAAATATCAAGAAGCAGAATATTCAAAATA
GGCTAGCTCCTCCCTGCCTCCCACCAGCACCAGCTATAAAAGTATCATGA
TGGTTTTATTGATTGTATTGATATCAGAATTGATTGTGATGTGACTGCTT
GCATTGCAGCTACCAAAAACACACTNacagcgaaaggtttgtttttattt
tagtttgtatctttgaaagaccccatcggatttaggcagggatgtcggat
ttaggaccactcacggtactgtGTTTCTTCAACTAAACATATCAACATGT
CAAGCAAAAAGTACACCTAAATCACTATTTTGAATCgcaattttaaatca
aaagctttaacttgaaatgttgcatagaataaatttgtctttttatAGAN
ATTTTCCTAAATTCAAGATTATTCTGGAATGGATCAGCTAGAACAGCCAT
ACCCAGCATAATCAAGTCAGCTAAAACAACTTGTTCAAGTACAATATATT
AATTACCGTACACGTACATTCATATGCTTGATGATAAAAAATGTTATGAT
ATCTTNATTACATACAGTAAACATTCGAAGTTTTTataaacattcgaatt
cttatgaaacattcgaattttttaatttaaacatTCGATTACCTTTGCAA
TAGCTTCACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036795XLOC_036795Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058407-exon-scaffold_310-1491911889:92814..93625TCONS_00058407-exon-scaffold_310-1491911889:92814..93625Clytia hemisphaericaexon
TCONS_00058407-exon-scaffold_310-1510915933:92814..93625TCONS_00058407-exon-scaffold_310-1510915933:92814..93625Clytia hemisphaericaexon
TCONS_00058407-exon-scaffold_310-1575043694:92814..93625TCONS_00058407-exon-scaffold_310-1575043694:92814..93625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_310supercontigscaffold_310:92814..93625 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.679966	1.26383	0.963405	0.919009	13.0999	11.0226	6.83043	6.3854	3.68823	7.15161	3.3837	4.85956	1.21791	1.41741	0.543125	0.804736	0.800708	0.906719	2.52746	1.19158	0.999707	1.33356	0.326643	0.74491	0.830102	1.8615	2.2021	3.09218	0.574292	1.62465
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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