TCONS_00058334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058334
Unique NameTCONS_00058334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058334 ID=TCONS_00058334|Name=TCONS_00058334|organism=Clytia hemisphaerica|type=transcript|length=606bp
NTTAATATAAGATCATGTTGTTCAAGGAGCTGACTCAGACAAGATCTTCC
ACTTCTAAAGCCATGCTGATTTGggttgaaaaagttattttcgtcCATGT
GTTTGACATTGATGTGTTTTCTGAAGACTTTCTCAaagatttttataatc
tgaGAGAGATCTGAAAATCTTTAGACTGAGAGGAGaggagaaaaaaacaa
gaaagtagATTGTGTGTGCTAAACAACTGTTGAAAAAGGGAAGGCCGCTG
CGTGCCTTCTTGGCTTTCTGCAGGCCTAACAAGGCTAACCACATGGGTTA
CCATGCATGGGCATGTCGGGTTAGAGGAgggtttattttattttgactgC
TAGAAAGTATATAGAATAACAGTCCAGTTAGTTCCAAGTTCAAAATTTAA
TTAGCAATTGAGGGGCACAAGAAAGTTTAGGCTATACCGTGGGTTTTGGA
GAGTTTGCCTACCTCGGAAAgtattttaccattttcctgacTTTCCTTAC
TGAAACTTGGCTGAAACTATAAAGTGTACTTTCTTTtgcaaacatcaatt
tgtcaatacacctttcctgtaATTCGCCAAACTAATGCGCATGCATAATT
TCGATG
Run BLAST on NCBI

transcript from alignment at scaffold_309:182667..183272

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058334 ID=TCONS_00058334|Name=TCONS_00058334|organism=Clytia hemisphaerica|type=transcript|length=606bp|location=Sequence derived from alignment at scaffold_309:182667..183272 (Clytia hemisphaerica)
CATCGAAATTATGCATGCGCATTAGTTTGGCGAATtacaggaaaggtgta
ttgacaaattgatgtttgcaAAAGAAAGTACACTTTATAGTTTCAGCCAA
GTTTCAGTAAGGAAAgtcaggaaaatggtaaaatacTTTCCGAGGTAGGC
AAACTCTCCAAAACCCACGGTATAGCCTAAACTTTCTTGTGCCCCTCAAT
TGCTAATTAAATTTTGAACTTGGAACTAACTGGACTGTTATTCTATATAC
TTTCTAGcagtcaaaataaaataaacccTCCTCTAACCCGACATGCCCAT
GCATGGTAACCCATGTGGTTAGCCTTGTTAGGCCTGCAGAAAGCCAAGAA
GGCACGCAGCGGCCTTCCCTTTTTCAACAGTTGTTTAGCACACACAATct
actttcttgtttttttctcctCTCCTCTCAGTCTAAAGATTTTCAGATCT
CTCtcagattataaaaatcttTGAGAAAGTCTTCAGAAAACACATCAATG
TCAAACACATGgacgaaaataactttttcaaccCAAATCAGCATGGCTTT
AGAAGTGGAAGATCTTGTCTGAGTCAGCTCCTTGAACAACATGATCTTAT
ATTAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036743XLOC_036743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058334-exon-scaffold_309-1491911889:182667..183272TCONS_00058334-exon-scaffold_309-1491911889:182667..183272Clytia hemisphaericaexon
TCONS_00058334-exon-scaffold_309-1510915933:182667..183272TCONS_00058334-exon-scaffold_309-1510915933:182667..183272Clytia hemisphaericaexon
TCONS_00058334-exon-scaffold_309-1575043694:182667..183272TCONS_00058334-exon-scaffold_309-1575043694:182667..183272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:182667..183272 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.407027	0.857446	0.325582	0.543005	1.25668	2.24926	0.459569	0.975956	0.630242	0.696215	0.0905383	0.476131	0.396475	0.808903	0.304408	0.453989	0.201257	0.155818	0.0949965	0.099407	0.584216	0	0	0.0931544	0.575681	0.0856302	0	0.261549	0	0.118229
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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