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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058289 ID=TCONS_00058289|Name=TCONS_00058289|organism=Clytia hemisphaerica|type=transcript|length=1695bpRun BLAST on NCBI transcript from alignment at scaffold_309:416544..422583- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058289 ID=TCONS_00058289|Name=TCONS_00058289|organism=Clytia hemisphaerica|type=transcript|length=6040bp|location=Sequence derived from alignment at scaffold_309:416544..422583- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058289 vs. Swiss-Prot (Human)
Match: CBPD (Carboxypeptidase D OS=Homo sapiens GN=CPD PE=1 SV=2) HSP 1 Score: 218.394 bits (555), Expect = 2.539e-84 Identity = 122/229 (53.28%), Postives = 155/229 (67.69%), Query Frame = 3
Query: 114 FQHHNYVQMQDYLHKIHQRCQNITRLYSIGKSIRGRDLLVMEITEKPGVYVSLKPNFKYIGNMHGNXXXXXXXXXXXXXXXCDGYTNGDAEIIYLLQTIRIHIMPSMNPDGYERAREGDCQGVGGRTNANNYDLNRNFPDYFHGTNRIIQKETDLVMKWIKQYPFVLSANFHGGASVVNYPYDSSTTHPHIRGYSVSPDDDIFRSISKVYSYSHPDMFKGYPE*QMVPN 800
F HH++ M+ +L + NITRLYS+GKS+ R+L VMEI++ PGV+ +P FKYIGNMHGNEV+GRELLL L+E+LC + D E+ L+ RIH+MPSMNPDGYE+++EGD V GR N+NN+DLNRNFPD F Q ET VM W+K YPFVLSAN HGG+ VVNYP+D + YS SPDD +F+ I+ YS + MF+G P M PN
Sbjct: 501 FHHHHFPDMEIFLRRFANEYPNITRLYSLGKSVESRELYVMEISDNPGVHEPGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGT-DPEVTDLVHNTRIHLMPSMNPDGYEKSQEGDSISVIGRNNSNNFDLNRNFPDQFVQITDPTQPETIAVMSWMKSYPFVLSANLHGGSLVVNYPFDDD--EQGLATYSKSPDDAVFQQIALSYSKENSQMFQGRPCKNMYPN 726 HSP 2 Score: 113.62 bits (283), Expect = 2.539e-84 Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = 2
Query: 782 ITNGAEWYPITGGMQDYNYMYTNAFEVLVEMACCKYPLAAKLPQLWQDHKRPLINYMRLVHSGVKGTV-KLEDGSEVVGAKIDVSWSLGSPXXXXXXXXXXGGDYYRILLKGVYDLTVTV-GQNKLKTSIDIKKGQVLRQDFIV 1207
ITNGA WY + GGMQD+NY+ TN FEV +E+ C KYPL +LP W+ ++R LI +M+ VH GV+G V DG ++ A I V+ + P GDY+R+L+ G Y +T + G N + ++ +K ++ +F +
Sbjct: 733 ITNGASWYNVPGGMQDWNYLQTNCFEVTIELGCVKYPLEKELPNFWEQNRRSLIQFMKQVHQGVRGFVLDATDGRGILNATISVA-EINHPVTTYKT-----GDYWRLLVPGTYKITASARGYNPVTKNVTVKSEGAIQVNFTL 870 HSP 3 Score: 154.451 bits (389), Expect = 1.296e-63 Identity = 87/227 (38.33%), Postives = 130/227 (57.27%), Query Frame = 3
Query: 186 RLYSIGKSIRGRDLLVMEIT-------------------EKPGVYVSLKPNFKYIGNMHGNXXXXXXXXXXXXXXXCDGYTNGDAEIIYLLQTIRIHIMPSMNPDGYERAREGDC-------QGVGGRTNANNYDLNRNFPDYFH-GTNRIIQK--ETDLVMKWIKQYPFVLSANFHGGASVVNYPYDSSTTHPHIRGYSVSPDDDIFRSISKVYSYSHPDMFKGYP 779
RL+SIG+S+ GR L V+ +T + G + +P K +GNMHG+E + R++L++L L GY GD ++ LL T ++++PS+NPDG+ERAREGDC G GR N+ DLNR+FPD F G + + E +++WI++ FVLS N HGG+ V +YP+D S H YS + DD++F+ ++K Y+ +HP M G P
Sbjct: 81 RLFSIGRSVEGRPLWVLRLTAGLGSLIPEGDAGPDAAGPDAAGPLLPGRPQVKLVGNMHGDETVSRQVLIYLARELAAGYRRGDPRLVRLLNTTDVYLLPSLNPDGFERAREGDCGFGDGGPSGASGRDNSRGRDLNRSFPDQFSTGEPPALDEVPEVRALIEWIRRNKFVLSGNLHGGSVVASYPFDDSPEHKATGIYSKTSDDEVFKYLAKAYASNHPIMKTGEP 307 HSP 4 Score: 108.612 bits (270), Expect = 1.296e-63 Identity = 63/146 (43.15%), Postives = 91/146 (62.33%), Query Frame = 2
Query: 782 ITNGAEWYPITGGMQDYNYMYTNAFEVLVEMACCKYPLAAKLPQLWQDHKRPLINYMRLVHSGVKGTVKLE-DGSEVVGAKIDVSWSLGSPXXXXXXXXXXGGDYYRILLKGVYDLTVTV-GQNKLK-TSIDIKKGQVLRQDFIVK 1210
ITNGA WY + GGMQDYNY++ N FE+ +E++CCKYP A++L Q W++++ LI + VH GVKG VK GS + A I V+ ITT + GD+YR+L+ G Y+LTV + G L T++ +K+G DF ++
Sbjct: 321 ITNGAHWYDVEGGMQDYNYVWANCFEITLELSCCKYPPASQLRQEWENNRESLITLIEKVHIGVKGFVKDSITGSGLENATISVA------GINHNITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVTNVVVKEGPATEVDFSLR 460 HSP 5 Score: 107.842 bits (268), Expect = 1.771e-39 Identity = 77/234 (32.91%), Postives = 126/234 (53.85%), Query Frame = 3
Query: 81 ASIISLANGIVFQHHNYVQMQDYLHKIHQRCQNITRLYSIGKSIRGRDLLVMEITEKPGVYVSLKPNFKYIGNMHGNXXXXXXXXXXXXXXXCDGYTNGDAEIIYLLQTIRIHIMPSMNPDGYERAREGDCQGVGGRTNANNYDLNRNFPDYFHGTNRIIQKETDLVMK-WIKQYPFVLSANFHGGASVVNYPYDSSTTHPHIRGYSVSPDDDIFRSISKVYSYSHPDMFKGYP 779
+S ++LA ++++H+Y + ++L + +IT L ++G+S R + +EI+ KP V +P +++ +HGN +G ELLL L E LC Y A + L+ RI I+PS+NPDG ERA+E DC G+TNA DL+ +F TN Q ET +++ I++ F LS GG+ +V YPYD + + + + ++ +Y+ +HP M G P
Sbjct: 923 SSNLALA---LYRYHSYKDLSEFLRGLVMNYPHITNLTNLGQSTEYRHIWSLEISNKPNVSEPEEPKIRFVAGIHGNAPVGTELLLALAEFLCLNYKKNPA-VTQLVDRTRIVIVPSLNPDGRERAQEKDCTSKIGQTNARGKDLDTDF------TNNASQPETKAIIENLIQKQDFSLSVALDGGSMLVTYPYD--------KPVQTVENKETLKHLASLYANNHPSMHMGQP 1138 HSP 6 Score: 74.3294 bits (181), Expect = 1.771e-39 Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 2
Query: 782 ITNGAEWYPITGGMQDYNYMYTNAFEVLVEMACCKYPLAAKLPQLWQDHKRPLINYMRLVHSGVKGTVKLEDGSEVVGAKIDVSWSLGSPXXXXXXXXXXGGDYYRILLKGVYDL 1126
+ GAEW+ G M+DY+ Y + E+ V +CC +P AA+LP LW D+KR L++ + VH GV G VK + G + A I ++ + + T +GG ++ +L GV+++
Sbjct: 1152 VMRGAEWHSHLGSMKDYSVTYGHCPEITVYTSCCYFPSAARLPSLWADNKRSLLSMLVEVHKGVHGFVKDKTGKPISKAVIVLNEGI-------KVQTKEGGYFHVLLAPGVHNI 1259 The following BLAST results are available for this feature:
BLAST of TCONS_00058289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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