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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058287 ID=TCONS_00058287|Name=TCONS_00058287|organism=Clytia hemisphaerica|type=transcript|length=2067bpRun BLAST on NCBI protein sequence of TCONS_00058287-protein >TCONS_00058287-protein ID=TCONS_00058287-protein|Name=TCONS_00058287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=634bp MVDTIDLFRKLGSGARFDLKRFRDDADQFQMVHKKTTDSISKNDTIDFDARun BLAST on NCBI transcript from alignment at scaffold_309:400550..414453- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058287 ID=TCONS_00058287|Name=TCONS_00058287|organism=Clytia hemisphaerica|type=transcript|length=13904bp|location=Sequence derived from alignment at scaffold_309:400550..414453- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_309:400550..414453- >TCONS_00058287 ID=TCONS_00058287|Name=TCONS_00058287|organism=Clytia hemisphaerica|type=CDS|length=34290bp|location=Sequence derived from alignment at scaffold_309:400550..414453- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058287 vs. Swiss-Prot (Human)
Match: DDX52 (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=3) HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0 Identity = 272/476 (57.14%), Postives = 367/476 (77.10%), Query Frame = 2
Query: 515 EQQEKTKSEKQTREKLIEQQKEKINILRKQHRITVHGADIPDPIESFSDL-KRFKVSQTLLKNLQGNSYEEPTPIQMQAIPILIQQRELLACAPTGSGKTLSFIXXXXXXXXXXXXCGLRAVVVSPTRELAQQIHREFVRMNEGLGLKIHVLTKAK--ASTIANSKTNHFDILVATPNRLVHLLQQDPPALQLSSVEWLVLDEGDKLFEEGDAGFRDQVAAIFQACDNPQIRHTLFSATLANNVEEWSKLHLDNVIRINIGARNAATDTVEQELVFVGQESGKLLAMRQIILRGFQPPVLVFVQSKDRAKELFNELIYDGLNVDVIHADRTQLQRENVVKSFRAGKIWILIATELMGRGIDFKGVNMVVNYDFPPTAVSYIHXXXXXXXXXXXXXAVTFFTEDDKINLRSIANVMRSSGCEIPEWMLQIKNPNKRTKKKLSKNPIERDQIKTSSKYDIQKSKQRKQMIEHSKTKKK 1933
E ++ + K T KL +KEKIN LR +H+I V G D+PDPI +F L + +K++ LL+N+ ++ PTPIQMQAIP+++ RELLA APTGSGKTL+F +P+L LK+P G RA+++SPTRELA QIHRE ++++EG G +IH++ KA A + FDILV TPNRL++LL+QDPP + L+SVEWLV+DE DKLFE+G GFRDQ+A+IF AC + ++R +FSAT A +VE+W KL+LDNVI ++IGARN+A +TVEQEL+FVG E+GKLLAMR+++ +GF PPVLVFVQS +RAKELF+ELIY+G+NVDVIHA+RTQ QR+N V SFRAGKIW+LI T L+ RGIDFKGVN+V+NYDFP ++V YIHRIGRTGRAG KG+A+TFFTEDDK LRS+ANV++ +GC +PE++ + + KKK+ K P+ER+ I T+ K ++K+K +++ + +KKK
Sbjct: 117 EDKKVQRESKLTSGKLENLRKEKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKAKDKQKKVTGQNSKKK 592 The following BLAST results are available for this feature:
BLAST of TCONS_00058287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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