TCONS_00058287-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058287-protein
Unique NameTCONS_00058287-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058287-protein ID=TCONS_00058287-protein|Name=TCONS_00058287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=634bp
MVDTIDLFRKLGSGARFDLKRFRDDADQFQMVHKKTTDSISKNDTIDFDA
LDFFGNSTAPLSSKENVNCSKGKTRKRQRRKSKTEEDEVCVDKNKDVSED
ESSTKKKKKKKKSSILDESNDQTNDDITIMKKKKKKKKALGTSDNDDGEQ
QEKTKSEKQTREKLIEQQKEKINILRKQHRITVHGADIPDPIESFSDLKR
FKVSQTLLKNLQGNSYEEPTPIQMQAIPILIQQRELLACAPTGSGKTLSF
ILPLLHHLKEPKKCGLRAVVVSPTRELAQQIHREFVRMNEGLGLKIHVLT
KAKASTIANSKTNHFDILVATPNRLVHLLQQDPPALQLSSVEWLVLDEGD
KLFEEGDAGFRDQVAAIFQACDNPQIRHTLFSATLANNVEEWSKLHLDNV
IRINIGARNAATDTVEQELVFVGQESGKLLAMRQIILRGFQPPVLVFVQS
KDRAKELFNELIYDGLNVDVIHADRTQLQRENVVKSFRAGKIWILIATEL
MGRGIDFKGVNMVVNYDFPPTAVSYIHRIGRTGRAGRKGRAVTFFTEDDK
INLRSIANVMRSSGCEIPEWMLQIKNPNKRTKKKLSKNPIERDQIKTSSK
YDIQKSKQRKQMIEHSKTKKKDNEEPSTKDTDGK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036717XLOC_036717Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058287TCONS_00058287Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 158..178
NoneNo IPR availableGENE3D3.40.50.300coord: 420..619
e-value: 7.0E-46
score: 155.7
NoneNo IPR availableGENE3D3.40.50.300coord: 64..419
e-value: 5.7E-48
score: 162.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 578..634
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..161
NoneNo IPR availableCDDcd00079HELICccoord: 415..544
e-value: 5.85669E-37
score: 133.132
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 215..418
e-value: 1.9E-50
score: 183.6
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 227..403
score: 29.83
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 452..536
e-value: 2.9E-30
score: 116.5
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 428..536
e-value: 4.7E-28
score: 97.7
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 414..575
score: 23.007
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 220..391
e-value: 2.7E-40
score: 137.9
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 196..224
score: 9.098
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 227..548

Blast
[Close]
BLAST of TCONS_00058287-protein vs. Swiss-Prot (Human)
Match: DDX52 (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=3)

HSP 1 Score: 619.387 bits (1596), Expect = 0.000e+0
Identity = 314/629 (49.92%), Postives = 437/629 (69.48%), Query Frame = 0 
Query:    2 VDTIDLFRKLGSGARFDLKRFRDDADQFQMVHKKTTDSISKNDTIDFDA------LDFFGNSTAPLSSKENVNCSKGKTRKRQRRKSKTEEDEVCVDKNKDVSEDESSTKKKKKKKKSSILDESNDQTNDDITIMKKKKKKKKALGTSDNDDGEQQEKTKSEKQTREKLIEQQKEKINILRKQHRITVHGADIPDPIESFSDL-KRFKVSQTLLKNLQGNSYEEPTPIQMQAIPILIQQRELLACAPTGSGKTLSFILPLLHHLKEPKKCGLRAVVVSPTRELAQQIHREFVRMNEGLGLKIHVLTKAK--ASTIANSKTNHFDILVATPNRLVHLLQQDPPALQLSSVEWLVLDEGDKLFEEGDAGFRDQVAAIFQACDNPQIRHTLFSATLANNVEEWSKLHLDNVIRINIGARNAATDTVEQELVFVGQESGKLLAMRQIILRGFQPPVLVFVQSKDRAKELFNELIYDGLNVDVIHADRTQLQRENVVKSFRAGKIWILIATELMGRGIDFKGVNMVVNYDFPPTAVSYIHRIGRTGRAGRKGRAVTFFTEDDKINLRSIANVMRSSGCEIPEWMLQIKNPNKRTKKKLSKNPIERDQIKTSSKYDIQKSKQRKQMIEHSKTKKK 621
            +D  DLFR+LG+GA+FD +RF  DA +FQ+  +K           DFD+      LDFFGN       K++V    G ++  Q+ ++  +++E   ++ ++ S      KKK+K   S I  +    T   ++ ++ K + KK                +  K T  KL   +KEKIN LR +H+I V G D+PDPI +F  L + +K++  LL+N+    ++ PTPIQMQAIP+++  RELLA APTGSGKTL+F +P+L  LK+P   G RA+++SPTRELA QIHRE ++++EG G +IH++ KA   A       +  FDILV TPNRL++LL+QDPP + L+SVEWLV+DE DKLFE+G  GFRDQ+A+IF AC + ++R  +FSAT A +VE+W KL+LDNVI ++IGARN+A +TVEQEL+FVG E+GKLLAMR+++ +GF PPVLVFVQS +RAKELF+ELIY+G+NVDVIHA+RTQ QR+N V SFRAGKIW+LI T L+ RGIDFKGVN+V+NYDFP ++V YIHRIGRTGRAG KG+A+TFFTEDDK  LRS+ANV++ +GC +PE++   +    + KKK+ K P+ER+ I T+ K  ++K+K +++ +    +KKK
Sbjct:    1 MDVHDLFRRLGAGAKFDTRRFSADAARFQIGKRK----------YDFDSSEVLQGLDFFGN-------KKSVPGVCGASQTHQKPQNGEKKEESLTERKREQS------KKKRKTMTSEIASQEEGATIQWMSSVEAKIEDKKV--------------QRESKLTSGKLENLRKEKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKAKDKQKKVTGQNSKKK 592
The following BLAST results are available for this feature:
BLAST of TCONS_00058287-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX520.000e+049.92Probable ATP-dependent RNA helicase DDX52 OS=Homo ... [more]
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