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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058273 ID=TCONS_00058273|Name=TCONS_00058273|organism=Clytia hemisphaerica|type=transcript|length=720bp
CGCAAAAGCACTGCACAGAAAGGAATGATATTTCTGATCCTTCATCACTC
ATGAAATTGGCAAATCAGTCTATTACAGCTAGAGCATGCATGTCTGTATA
CTACGAAATGTTTATTATGATTTGCAgCGcagctaaaaataaaatagtcA
AAATGAGTGGACGCGGTAAAGGAGGAAAAAGTAAAACTAAAGCAAAATCG
CGATCATCAAGAGCTGGCCTACAATTTCCTGTTGGAAGAATTCACAGATT
TTTACGTAAAGGACATTACGCCTCTCGAGTTGGAAGCGGAGCACCTGTTT
ATCTGGCTGCAGTTTTAGAATATTTGTCTGCTGAAATTCTTGAATTGGCT
GGAAATGCAGCCCGTGATAACAAAAAACGTCGTATTGTTCCACGTCACTT
GCAACTTGCCGTCAGAAATGACGAAGAATTGAATAAACTTTTAAGTGGAG
TCACCATTGCTGCTGGTGGTGTTTTGCCAAACATCAACGCTCTCTTGCTT
CCCAAGAAGAGCAAAGAAGCTAAGGGCAAAAATTCTCAATCTCAAGAATA
TTAAAAACTTTATGGAACTAATCTTGATTATATCATTAGCCTTGggacaa
tttttatttttattttgtatatttcttGTTCAATAACAATACTTTTAAAA
TAACTGTATTATCTCGTTCATTCATTGAGTTTTTTTGGGCCTTGTTACTC
AGAAATTGTTCTTTTCAATT Run BLAST on NCBI protein sequence of TCONS_00058273-protein >TCONS_00058273-protein ID=TCONS_00058273-protein|Name=TCONS_00058273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
QKHCTERNDISDPSSLMKLANQSITARACMSVYYEMFIMICSAAKNKIVK
MSGRGKGGKSKTKAKSRSSRAGLQFPVGRIHRFLRKGHYASRVGSGAPVY
LAAVLEYLSAEILELAGNAARDNKKRRIVPRHLQLAVRNDEELNKLLSGV
TIAAGGVLPNINALLLPKKSKEAKGKNSQSQEY Run BLAST on NCBI transcript from alignment at scaffold_309:178345..187833- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058273 ID=TCONS_00058273|Name=TCONS_00058273|organism=Clytia hemisphaerica|type=transcript|length=9489bp|location=Sequence derived from alignment at scaffold_309:178345..187833- (Clytia hemisphaerica)
CGCAAAAGCACTGCACAGAAAGGAATGATATTTCTGATCCTTCATCACTC
ATGAAATTGGCAAATCAGTCTATTACAGCTAGAGCATGCATGTCTGTATA
CTACGAAATGTTTATTATGATTTGCAGGTGTCTTTTTATTTTATACTTAT
ACTTACTTGGATACTTTTGGATGTGTTTGAGCGTACTGCTCTGGCAAGAA
TCTTTTGATCCACACCACAATCTTCATTCAATCCATAATTCCTGAAGGAA
GAAATGGATCAGCAGAGAGATTTCATGTCTAAAATTGAGTTTGANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTAACTACCCTGGGTAGTAAAATTTTTTTTCGATTTTTCGTC
ACACCACCACCGTAGTAAACGTCATTATGTCTGAGATTTTACTACCGACC
CCCCCCTGAAAGGGGTCTATATGTGAATAGAGCAGTAAAAAATACAACTT
TTCTATTTTTCCTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTGATG
ATCCGCGGCACTATCGTAAAGCTAGAATCGCTTCGCGTACTCTTCGCTTG
AGAAAATGATTGACAGATTGAAGTTTTTCATCCCCGCGGTGCGCGCCTCC
TCGGACCGCACTAAAATGGTAGACTGAGCTGTGATAGATCATTTCGATGG
AAGTTGTTGGAATGTTTACAAGGCTCTTGACAGAATATTGTTTGTTTTCA
TAGTTTGCAGAGGGGTATGAACCCCCCTAGGTTTATTTCANACCCCCCCT
TTTTTATTTGATCCCCCCCTACATTCCCATCCCCCCTAGTTTTTTCGGCA
GATCTCGGTACCCCCCCTACAAAGGCCCTCCGAAAAGTTGGCATCCCCCC
CTATTAAAAAGGGGGGGTGCAAACTATGGTTTTATTGTCAATGATGACAG
TGCGGTTATTAATTTTGTTAGATCTGACAAATTGATGTTTGTAAGTGCAC
TTTATAGTTTTGATTCCCATTGAAGAATCATATTCTGGTTTTCATGTTAT
TAGATGCTGGTTTAGAGCTTTAGGTCTACACTGATGGTCTTTAGATTTGA
AGCAATCATTGATATTTGGCACAAGATTTTCCAATATTTTCCAGGTGTAC
CGGGTGACCCACGAAAAAGTTCGGACGTTTCTCGACGTCTTGAGGCTGAA
CAAATGTCCCAAAGTGCTTGGAGTTTTGGTATTTAGAAAGTAGATATACT
AACTTAAAATTTGAGCTATCACTTTTTAAGTTTGACCAACTAGTTCTCTA
CTTATGAGCTTTTAAAATCAAAACTCACTTTTTGGAAAGTGTGAAAAACA
CGTAAAAACAGGTATTAAATTTTCGCAATCAATTAGAAAATTACTTACAA
ATTGACTTAGTTAACAAGTTTTATGAAATTAACAATTATCAAAACCACCT
TTGAAAGTAATTTTTGTTTAAAACAAGACTAGTTTTAATAAAAATTGTCA
CTTTCAAAGAATTTTCTCAAAAACTGTATATCAAAAATGTCTAAACATAC
CTAATTTGATACCCCTTTTTTACGTGTTTTTTACACTTTCCGAAAAGTGA
ATATTGAGTTTAAAAGCTCATAACTAGGGGACTTGTGGATCAAATTAAAA
AAATGATAGCTCAAATTTTAAGTTAGGATATCTACTTTCTAAATAGTAAA
ACTCCAAACACTTTGGGACATTTGTTTGGCTTCAAGACGTCGAGAAACGT
CCGAACTTTTTCGTGGGTCACCCGGTATATGATCCTGTAGCGTTCTCTCC
TTCTTTGAAGTGAGTATATTCTAAGCTTCTTTAGACTTTCCCAATAATTG
TGTGTTCCTTTTATTTGTTTCAAGAATGATTTCTGGATCTCTTCAAGTCT
TTGAATAAGACTAATAGTACTGGGGCTCCATAACGCTGAGCAATATTCCA
GTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTAATATAAGATCATGTTGTTCAAGGAGCTGACTCAGA
CAAGATCTTCCACTTCTAAAGCCATGCTGATTTGGGTTGAAAAAGTTATT
TTCGTCCATGTGTTTGACATTGATGTGTTTTCTGAAGACTTTCTCAAAGA
TTTTTATAATCTGAGAGAGATCTGAAAATCTTTAGACTGAGAGGAGAGGA
GAAAAAAACAAGAAAGTAGATTGTGTGTGCTAAACAACTGTTGAAAAAGG
GAAGGCCGCTGCGTGCCTTCTTGGCTTTCTGCAGGCCTAACAAGGCTAAC
CACATGGGTTACCATGCATGGGCATGTCGGGTTAGAGGAGGGTTTATTTT
ATTTTGACTGCTAGAAAGTATATAGAATAACAGTCCAGTTAGTTCCAAGT
TCAAAATTTAATTAGCAATTGAGGGGCACAAGAAAGTTTAGGCTATACCG
TGGGTTTTGGAGAGTTTGCCTACCTCGGAAAGTATTTTACCATTTTCCTG
ACTTTCCTTACTGAAACTTGGCTGAAACTATAAAGTGTACTTTCTTTTGC
AAACATCAATTTGTCAATACACCTTTCCTGTAATTCGCCAAACTAATGCG
CATGCATAATTTCGATGCCCTGTCACCATTTGGTCTCTGGAGGTAAAAAA
ACCCGTTTTTCCTGCATTTCCTCCAGTTTTATTTCAGAAGGGGGCATAGC
CGCCCCCGAGATGATTTTTGAAATCCTGCTCCTGAAAAGTTGACGCCAAA
GACAGAAAAAATTTTCAGCTCCTGAGATGGTACGGTGCGCCGAAGGCTCA
AAAGCACAAAATTTTTTAGGGGTATTTTTCGCGCTTTGTTTTGGTACCGC
GATTGAGATGTTCAATAGTGTTGAGGGCGTTATTTTTCAGGGCGAAAGGC
CGCGGTTTATTAAAAAGGACAGTCGATTGGGCATAAACTTATTAATTTCG
GCTGCCGTAATCTTGTAAAAATCATTTTCGGAACAGTTCGAAAGAAAAGA
TAGGGGACGTTGGCGGTGGTTTGTAGATGCTGCCCTTGGCCTTGGAATCT
TGCACTTACCCCTGGTACGAAGCATTTCTGCCCCTGAGGGCACTGATACA
ACTTTTTCTGCCCCTGCCCTTCTGAAAAGGAAAGGTCCTGCCCCCGAGAT
CTCGACGAAATCTGCCACAATCTGAAAACTGGCATTTCCTTAGGGAAAGT
TGGTTTTTTGAGCTTTTCTCAAGTTCTGTAGATCAAAATCCCCTCAAATC
TTAGTATGTTCAATCTATTCCTGCTATTATACCACCCTGAAATATTTTTG
CCAAAAGAAGATCGCTATCAAAAGTTAGAAGTTGAAAACCTACTTTCCCT
AACCCCTTGCAGGCAAAAACGCGTCAGTTTACCTCCCAAACAATTTCGTA
CACACCGGTGGAGCGCACATTTTCCCGGGCCATTTCTGAGAAGTTTGAAT
TACGGGAAAGGTTTATTGTTGGAATTTTTTCAATAATGCATGAAATGTTA
AATCAGTAGAAAAATAAAAAAATGTTATACATATTATTTTATAACATTTC
ATGTTATTGAGCAATGAAAAATTGAAAAAGTAGCTTTAAAAAATAAGATT
CAATTTTACAATTTACAAACCCCTCTGATATATTTGCCCTTATAAGGACA
ACACATTTTGCTGATTCAGCATTTTATATGATTGCTGTTTTTATCTTAAA
AACACCCAACTGTTTGTCTGATCTAAGGGGTCGTCGACAATCCTTTTTTT
TAAGGTTTAAGGGGGAGGGGTCGATGTTTATGCAATCAAAAATAGTTTTA
AAAAAAGGAAAATCTCACTTACAATAGAAGCTCCTCGCAGTGTCCCAAAG
TCTTAAAAGGTACTAATAAACCATTTGATCCATCACTTTGACCATACTTT
TCAATTGTATATCGAGAAATACAATTCGTCACATGACCCAATTCGCTCCT
GCACGGTTGAAAAACTTAAATCTTTCAATCATTTTCGCAAGCAAAGAGTA
TGCGTAGTGATTCTAGCTTTACGTAGTGCCGTGGATCATTCATTAGTGGA
TAGTATTCAACTATCATTATCCCTTTTTTTCAGAAAATTTGTGTTTTTCA
TTGCTCTATTACACGTTTTTTATATAAGAATGTCCATGATGAAAATGGTC
AAAAAATTTAGAATAATACTAAGAATTTCATCATCATGGAATTTTGCTAC
TCAGCAAAGAATACCATTCTTAGAGCATTTTCATTGTAAATTGTCAATTA
CCCTGAAGTAAGGTTCACTCCTTTCACAAAAATGTCATTAATTATGCTTG
AAACGTATGTACTAACTGGTTAAATCTAGTCTAAATTAGGATCCTAACTT
AAGAATTCTGTAAGAATATTTTAGGATGATTCTCCCAAAAAAGTTAAGAA
TATCCATGATGAAATGGATTTACACCATTCTTATAAAAAAGCGTGTAACA
TACTGAATTTGAAAAATTTTCTATGTGCCTTTTTTTGCAACTTTAAAAAA
CTGATTTTTGTCCCGTCATTATGCAGGACTTCAGCTTAAGTGCTTGCAGG
GTTCAGACAGACCCTGGAAAACCTGGAAAACCTGGAAATATGATAAATTT
TCAGACAAATCAGGGAAACTCAGGGAAACCCAGGGAAAAAAATTTTTTTC
CCCGTATGCTCAGGGAAACTCAGGGAATTTTATTTTTTGAAGAATGAATG
GAAAAAACAGATTTAAAAGTTTTTTAGTTTTAAAGTGTTTATTCATATGC
AGTATTTGTAGCTTTAATTTTTACCTTAGGTTTACCATTTGATTTGTGTG
CCTTTTGTTTAGAGATACATCTCTTTTGACTCTGCTTAGTTTTTATGGTT
TGCTTGATACTCAGGGAAAAAATAGCTAAAATGAGGAATTACTCAGGGAA
AAAACCTTTGAAAATTGATTAAAATTCAGGGAATTTTATTTTCGAAGGTC
TGTCTGAACCCTGTAATGATTCTTAATTTGTTCATTAGGTTTTGTCCAAA
TTTCAGCTTCGTGTTCTTCTANAATAGCTAAAATGAGGAATTTCTCAGGG
AAAAAACCTTTGAAAATTGATTAAAATTCAGGGAAACTCAGGGAATTTTA
TTTTCGAAGGTCTGTCTGAACCCTGGCTTGCTTACAGCATTAGGTACAAA
GTCCAAATATGTGTTTCTTGTGAATTTTATATAAATTATATAAAGAGCTA
TACTGTATGTCGGCATTGCACAAAAGTTATTTTACCAGAAATTACTAGAT
GTGGAAGAATAAAAGGGTGCGTTGAAATTTGAATTTGAGAAAATAACATA
TGCACCAAAATTAATGAGATTAAGGTATATAATTCGATATTTATTGCTTG
AAGAATATTGGAGATTGTTGCTTGATTTTGTGTGAGATTTTAATCATTTT
TTAACTTTATGATAAGGAATGATCTTCCTGGAAGGGACAGAATTCTGGAA
AAATTTACGCTCATTCTTCCAATTTTGGAAGAATGTTACTTGTGGAGCTA
GTGGCAAGGACTGGTCAAGTATAAACAATTTACTCCTTATTTTTTGATGG
ACATGAGAAGTTTCTGTGGACTTTTGACTGATCAAAAGATGATTTCTAAG
ATATGCTTCTCAATGTCGCTGTATCATGCAATTTATGGAATTTGTCCATG
AAAGTTTAATTGAACCTGTATTCTAGGTCTTTACATCTCTGATAATGGTT
CTCAAATTAAGTGGTTACTCTTAGGTTCCAGATAATCAGGGGGACAGGTC
AAGTTGAACATTTACAAGAATTTTTGTCATGGGATTGGTCGTTAACTATT
CAAACAAAAATTTTTCTAAAGAACGCGTCATCTCATTGTTTTGAATAACC
AATTATGTGAGCATCTTGTAAAAACTTCAATACAACTGGGGGGGGGGGGG
GGGGGGTTTTTTTTAAAAATTTTAAAAAAAAAGGGGGGGGGGGGGGGGGA
TTTTTAAAAATTTTAAAAAAAAAGGGGGGGGGGGGGGGGGATTTTTAAAA
ATTTTAAAAAAAAAGGGGGGGGGGGGGGGGGTTGCTCTTTCAAGATTTTA
GTAAACAAGGGGGCATAATTGCCTTGGGTTGGAAATTGTACTTTTGAAAA
CCCAAAATAAGGTAGATATAGGCTAAAATCAGGTTATTTAGAGCAAAATA
AGGGGCCTTCTCTTTGACAGCTGAAAATATTCTTAAAAATTAATAAACGG
CGGGTCCTAATGAGGTCCGACAGGGTTGGAAAATTTTCGAAAAATTAACA
CGCAGGGTGGGGCGTTTATTTGGAACCTAAGAGTAAGTTATCAAATATCA
TAATTTTTTTATCTGATTTCAAGCATTTTGATATTTACTATTTCAGCGCA
GCTAAAAATAAAATAGTCAAAATGAGTGGACGCGGTAAAGGAGGAAAAAG
TAAAACTAAAGCAAAATCGCGATCATCAAGAGCTGGCCTACAATTTCCTG
TTGGAAGAATTCACAGATTTTTACGTAAAGGACATTACGCCTCTCGAGTT
GGAAGCGGAGCACCTGTTTATCTGGCTGCAGTTTTAGAATATTTGTCTGC
TGAAATTCTTGAATTGGCTGGAAATGCAGCCCGTGATAACAAAAAACGTC
GTATTGTTCCACGTCACTTGCAACTTGCCGTCAGAAATGACGAAGAATTG
AATAAACTTTTAAGTGGAGTCACCATTGCTGCTGGTGGTGTTTTGCCAAA
CATCAACGCTCTCTTGCTTCCCAAGAAGAGCAAAGAAGCTAAGGGCAAAA
ATTCTCAATCTCAAGAATATTAAAAACTTTATGGAACTAATCTTGATTAT
ATCATTAGCCTTGGGACAATTTTTATTTTTATTTTGTATATTTCTTGTTC
AATAACAATACTTTTAAAATAACTGTATTATCTCGTTCATTCATTGAGTT
TTTTTGGGCCTTGTTACTCAGAAATTGTTCTTTTCAATT Coding sequence (CDS) from alignment at scaffold_309:178345..187833- >TCONS_00058273 ID=TCONS_00058273|Name=TCONS_00058273|organism=Clytia hemisphaerica|type=CDS|length=1104bp|location=Sequence derived from alignment at scaffold_309:178345..187833- (Clytia hemisphaerica)
CGCAGCTAAAAATAAAATAGTCAAAATGAGTGGACGCGGTAAAGGAGGAA
AAAGTAAAACTAAAGCAAAATCGCGATCATCAAGAGCTGGCCTACAATTT
CCTGTTGGAAGAATTCACAGATTTTTACGTAAAGGACATTACGCCTCTCG
AGTTGGAAGCGGAGCACCTGTTTATCTGGCTGCAGTTTTAGAATATTTGT
CTGCTGAAATTCTTGAATTGGCTGGAAATGCAGCCCGTGATAACAAAAAA
CGTCGTATTGTTCCACGTCACTTGCAACTTGCCGTCAGAAATGACGAAGA
ATTGAATAAACTTTTAAGTGGAGTCACCATTGCTGCTGGTGGTGTTTTGC
CAAACATCAACGCTCTCTTGCTTCCCAAGAAGAGCAAAGAAGCTAAGGGC
AAAAATTCTCAATCTCAAGAATATTAACAAAAGCACTGCACAGAAAGGAA
TGATATTTCTGATCCTTCATCACTCATGAAATTGGCAAATCAGTCTATTA
CAGCTAGAGCATGCATGTCTGTATACTACGAAATGTTTATTATGATTTGC
AGCGCAGCTAAAAATAAAATAGTCAAAATGAGTGGACGCGGTAAAGGAGG
AAAAAGTAAAACTAAAGCAAAATCGCGATCATCAAGAGCTGGCCTACAAT
TTCCTGTTGGAAGAATTCACAGATTTTTACGTAAAGGACATTACGCCTCT
CGAGTTGGAAGCGGAGCACCTGTTTATCTGGCTGCAGTTTTAGAATATTT
GTCTGCTGAAATTCTTGAATTGGCTGGAAATGCAGCCCGTGATAACAAAA
AACGTCGTATTGTTCCACGTCACTTGCAACTTGCCGTCAGAAATGACGAA
GAATTGAATAAACTTTTAAGTGGAGTCACCATTGCTGCTGGTGGTGTTTT
GCCAAACATCAACGCTCTCTTGCTTCCCAAGAAGAGCAAAGAAGCTAAGG
GCAAAAATTCTCAATCTCAAGAATATTAACAAAAGCACTGCACAGAAAGG
AATGATATTTCTGATCCTTCATCACTCATGAAATTGGCAAATCAGTCTAT
TACAGCTAGAGCATGCATGTCTGTATACTACGAAATGTTTATTATGATTT
GCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058273-exon-scaffold_309-1575043694:187707..187833 | TCONS_00058273-exon-scaffold_309-1575043694:187707..187833 | Clytia hemisphaerica | exon |
| TCONS_00058273-exon-scaffold_309-1575043694:178345..178937 | TCONS_00058273-exon-scaffold_309-1575043694:178345..178937 | Clytia hemisphaerica | exon |
| TCONS_00058273-exon-scaffold_309-1510915933:187707..187833 | TCONS_00058273-exon-scaffold_309-1510915933:187707..187833 | Clytia hemisphaerica | exon |
| TCONS_00058273-exon-scaffold_309-1510915933:178345..178937 | TCONS_00058273-exon-scaffold_309-1510915933:178345..178937 | Clytia hemisphaerica | exon |
| TCONS_00058273-exon-scaffold_309-1491911889:187707..187833 | TCONS_00058273-exon-scaffold_309-1491911889:187707..187833 | Clytia hemisphaerica | exon |
| TCONS_00058273-exon-scaffold_309-1491911889:178345..178937 | TCONS_00058273-exon-scaffold_309-1491911889:178345..178937 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:178345..187833 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0000786 | nucleosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0046982 | protein heterodimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0000786 |
nucleosome |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0046982 |
protein heterodimerization activity |
Blast
BLAST of TCONS_00058273 vs. Swiss-Prot (Human)
Match: H2AX (Histone H2AX OS=Homo sapiens GN=H2AFX PE=1 SV=2) HSP 1 Score: 184.111 bits (466), Expect = 4.797e-58 Identity = 92/120 (76.67%), Postives = 100/120 (83.33%), Query Frame = 3
Query: 219 LQFPVGRIHRFLRKGHYASRVGSGAPVYLAAVLEYLSAEILELAGNAARDNKKRRIVPRHLQLAVRNDEELNKLLSGVTIAAGGVLPNINALLLPKKSKEAKG--------KNSQ-SQEY 551
LQFPVGR+HR LRKGHYA RVG+GAPVYLAAVLEYL+AEILELAGNAARDNKK RI+PRHLQLA+RNDEELNKLL GVTIA GGVLPNI A+LLPKK+ G K +Q SQEY
Sbjct: 24 LQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTSATVGPKAPSGGKKATQASQEY 143
The following BLAST results are available for this feature:
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