TCONS_00058271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058271
Unique NameTCONS_00058271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length994

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058271 ID=TCONS_00058271|Name=TCONS_00058271|organism=Clytia hemisphaerica|type=transcript|length=994bp
CCACGACACAGGTTCAGCCTTGTAGTCAAAAAGaggagtgattggtgttt
ttttttaataaatgacTTTATTTGCTGACTAAATTTTCACAATTTGTATG
AAGATTGTCGGTATGTTTTAGCTGTTCACAGTTTAACCCTATTTGGCAGG
CCTCAATGAGTATATCTACATATCAATCCTTTTAAGTTTAAAAAGAAATG
GTTTTAAATTTACCAAGTatcaaataaaatcaatttttatctCTGCAAGT
GCTTCAATGCAACGTCTTCAGAGAATTTCACGTAACCGGACGCTCGAAAA
ACAATTCATGGCgttattaatgtttttttttggctttAGCAAAGTGATTT
CGTATAGTATTCTTCAAAGTCACACTACAATGAGTTCAATaaaatttgct
gacagtcaatgaaaaacattgaacatgagccttatcaatgttttttgacc
taCTAGTAGTGATGTTGCTGCAACAACTGCTAGACCTGTAAACTTTTAAA
ACTGCAATGATCCAATTCCTTTTAGGCAGCTTCTGACATTGGAATCGATT
TTCCatattcaaaataaatcaaaaaacatGCCGCGAGCTTATTTTTTAGT
ATGATCTTTTAATTCATCGTTATTATCTTAGGCTTTTGGTCAGTCCCGTC
TTATTCCGTCATTTACAACGTAGAGGAATCCAGGTGTACATGTTTGTGAT
TCAAGAGGATGAAGACTTTGATTTCTGTTTGAACAAAGCCAAAGTTGATG
GCGTAATGACTGACTATCCCAAACGTTTATccaactttttaaaagaatct
AAAGGCTCTACTGGCGATGAGACAGATCCTATACTTAAGAAAGACTAGTt
gataatataatatatttatTTCGTGCCCATTATTCCAcagtaaacttttt
tcttttttataagaacaatttgagaacAATTCTGAGCCTGAAATCActca
atttcaaacaatttagTGGTCaaagtaaaaattgggtataacgc
Run BLAST on NCBI

transcript from alignment at scaffold_309:135620..137084-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058271 ID=TCONS_00058271|Name=TCONS_00058271|organism=Clytia hemisphaerica|type=transcript|length=1465bp|location=Sequence derived from alignment at scaffold_309:135620..137084- (Clytia hemisphaerica)
CCACGACACAGGTTCAGCCTTGTAGTCAAAAAGAGGAGTGATTGGTGTTT
TTTTTTAATAAATGACTTTATTTGCTGACTAAATTTTCACAATTTGTATG
AAGATTGTCGGTATGTTTTAGCTGTTCACAGTTTAACCCTATTTGGCAGG
CCTCAATGAGTATATCTACATATCAATCCTTTTAAGTTTAAAAAGAAATG
GTTTTAAATTTACCAAGTATCAAATAAAATCAATTTTTATCTCTGCAAGT
GCTTCAATGCAACGTCTTCAGAGAATTTCACGTAACCGGACGCTCGAAAA
ACAATTCATGGCGTTATTAATGTTTTTTTTTGGCTTTAGCAAAGTGATTT
CGTATAGTATTCTTCAAAGTCACACTACAATGAGTTCAATAAAATTTGCT
GACAGTCAATGAAAAACATTGAACATGAGCCTTATCAATGTTTTTTGACC
TACTAGTAGTGATGTTGCTGCAACAACTGCTAGACCTGTAAACTTTTAAA
ACTGCAATGATCCAATTCCTTTTAGGCAGCTTCTGACATTGGAATCGATT
TTCCATATTCAAAATAAATCAAAAAACATGCCGCGAGCTTATTTTTTAGT
ATGATCTTTTAATTCATCGTTATTATCTTAGGCTTTTGGTCAGTCCCGTC
TTATTCCGTCATTTACAACGTAGAGGAATCCAGGTAAATGTTCAAAATTC
TTCGATTCGTATTTTCGTCAGCTGGTTGTTTTCAATACAATGGAGTCCCA
TGATTTGAACCCGCACGGGTAACGCAAATCTGTTCGAGTTAAGGAAATTT
CGAGTAATGGAGTAAGGTTGATAAGGCATTTTTAACTGACGGATTGAGAA
AACTTGTTCGAATTAAAAGAATAATCGAGTTATAGAGGTTCGAATTAAAT
AGACTCTACTGTATGTCATTTCAAAGGTACATTTATCAAAGTAAATATAC
AAAAAATGCACAAATCACGTCTCATTGAACCAAACAATAGAAATCACATG
TCAAAGCAACTTCGAAACACTGGTAACAGTTGAAATCCATCATTTTATTT
AGCTTTTTGTTTTGAGGTGTGACATTTATTTTGATTTTCTATTCTTTTGC
ATCTAATTTGTTTTCAAAGTACTTGGATGTCCTTTTTAACTTTTCTTTCC
ATAGGTGTACATGTTTGTGATTCAAGAGGATGAAGACTTTGATTTCTGTT
TGAACAAAGCCAAAGTTGATGGCGTAATGACTGACTATCCCAAACGTTTA
TCCAACTTTTTAAAAGAATCTAAAGGCTCTACTGGCGATGAGACAGATCC
TATACTTAAGAAAGACTAGTTGATAATATAATATATTTATTTCGTGCCCA
TTATTCCACAGTAAACTTTTTTCTTTTTTATAAGAACAATTTGAGAACAA
TTCTGAGCCTGAAATCACTCAATTTCAAACAATTTAGTGGTCAAAGTAAA
AATTGGGTATAACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036706XLOC_036706Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058271-exon-scaffold_309-1575043694:136402..137084TCONS_00058271-exon-scaffold_309-1575043694:136402..137084Clytia hemisphaericaexon
TCONS_00058271-exon-scaffold_309-1575043694:135620..135930TCONS_00058271-exon-scaffold_309-1575043694:135620..135930Clytia hemisphaericaexon
TCONS_00058271-exon-scaffold_309-1510915933:136402..137084TCONS_00058271-exon-scaffold_309-1510915933:136402..137084Clytia hemisphaericaexon
TCONS_00058271-exon-scaffold_309-1510915933:135620..135930TCONS_00058271-exon-scaffold_309-1510915933:135620..135930Clytia hemisphaericaexon
TCONS_00058271-exon-scaffold_309-1491911889:136402..137084TCONS_00058271-exon-scaffold_309-1491911889:136402..137084Clytia hemisphaericaexon
TCONS_00058271-exon-scaffold_309-1491911889:135620..135930TCONS_00058271-exon-scaffold_309-1491911889:135620..135930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:135620..137084 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0987843	0.133975	0.0185793	0.523266	0	0.281623	1.66395	1.10789	0.472103	0.399652	1.74269	0.975596	0.691853	0.513017	0.135473	0.109511	0.228887	0	0	0.296561	0.238727	0	0.343469	0.676488	2.47077	3.32408	0.272434	0.31309	0.855565	0.621549
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top