TCONS_00058264 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058264
Unique NameTCONS_00058264
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058264 ID=TCONS_00058264|Name=TCONS_00058264|organism=Clytia hemisphaerica|type=transcript|length=785bp
ATATTTTTTACGAAGTTTTTCAGTAACAAAAATGAAATCTGTGAAAACAT
GGCCAGTTCTTATGGAAGAAAAAGCAAGCGAAATAGACAGGCTGAAAGAA
GATGAAGAACGGTCACATAATTGGAAACGCTGGGGACCATATCTTTCTGA
AAGACAATGGGGAACTGTTAGAGAAGATTACTCTGCTGATGGTGATTGTT
GGAATTATTTTACCCACGACCAGTCCAGATCAAGGGCTTATCGGTGGGGT
GAAGACGGCCTTCTAGGATTTTGTGATCGACAATGTCGTCTTTGTTTTGG
ATTGAGTTTATGGAATGGAAAGGATACTATATTGAAAGAAAGGATGTTTG
GTCTTATCAATTCAGAAGGTAACCATGGTGAAGATGTGAAAGAGCTTTAT
TATTATCAAGATTCGACACCAACCCATTCGTACATGAAATCACTGTACAA
ATATCCACAAAGTGAATTCCCTTACACTTCTTTAGTGGAAGAGAACCAAA
GGCGTGGCGTCGAACATCCTGAATATGAGCTTCTTGATACAGGAGCGTTT
GCGGACAACAAATATTATGACGTGACAGCAGAATATGCGAAACGTTCTGC
AGAAGAAGTGCTTGGTGTCATCACTGTCACCAACAGATCCGATGAACATT
CACAAATCACCGTCCTCCCTACACTATGGTACCGCAACACTTGGATATGG
GGTTGTAAGCACGAAGGATGTACAATGAAACCCTCCATCAAACAATTGGG
AGAAGGTGTAGTCCATTGCAAACATGAAACACTAC
Run BLAST on NCBI

transcript from alignment at scaffold_309:850116..856257+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058264 ID=TCONS_00058264|Name=TCONS_00058264|organism=Clytia hemisphaerica|type=transcript|length=6142bp|location=Sequence derived from alignment at scaffold_309:850116..856257+ (Clytia hemisphaerica)
ATATTTTTTACGAAGTTTTTCAGTAACAAAAATGAAATCTGTGAAAACAT
GGCCAGTTCTTATGGAAGAAAAAGCAAGCGAAATAGACAGGCTGAAAGAA
GATGAAGAACGGTCACATAATTGGAAACGCTGGGGACCATATCTTTCTGA
AAGACAATGGGGAACTGTTAGAGAAGATTACTCTGCTGATGGTGATTGGT
AAGTATCTGTTTACttcaatacacatttttttatataaggaacacgttta
tcaggaacttgaggctgaaaatggctccaaaaataaggaattgtaaAGGA
ACTGggcaggctgagaataagacaACAAGTTAAGAAACAGAGAGTTGAAC
TTGCATGTATTTACAAAACCCTAaacaaaaagatgacaaaaaatTGATAT
TCAATAAACGCCTTTTCCCGTACTGTATTCCATTGTTATACTTATACATA
AGTTACATACTTAACAAATCCAATTTTGGCAGCtaagtaaataaggaact
cgataaggaactttgaggcggAAATTCCctggaaaaataaggaactccag
gctagGAGTAAAGTTAAGGAATTCCTtttatagaagaaaaaaaagaagtt
tgattCCTCTAATTAGAATAAACTGCAAATGAAAACTAATGGAAAAAGTT
ATTTCTTACTAAATATCAACCAGATTTTAAACTGTAAGCTTTGCttttat
atacattttttcAATGGTTGACCCTTAAAGGGGCATTAAAGTACtggcaa
aatttgtaaacaaaccgtacgtatgcagcgggatacgaaatcaaaaaaaa
tgtcacatgtcaaaataaaaaataaaaacaaatatggctgattttgattg
tttcatttgttttacAAGTCTGTTATGGAcatgtgattttaattgttctc
tttaatgacaccaggtgcgcgcaatgtttacattttaatacttttaataa
tttttaatacTTGTCCCTTTAAGTGTTTATTAAGCATTTTAAAATAACTA
CTTTTTGTATCTTCTAGTTGGAATTATTTTACCCACGACCAGTCCAGATC
AAGGGCTTATCGGTGGGGTGAAGACGGCCTTCTAGGATTTTGTGATCGAC
AATGTCGTCTTTGTTTTGGATTGAGTTTATGGAATGGAAAGGATACTATA
TTGAAAGAAAGGATGTTTGGTCTTATCAATTCAGAAGGTACATAACATTT
TAGAGCATTGGGCTGTTccttaaaaaaccatacaggggggggggtggaca
aaccttttcaagtcaaataaattattgaaaatgtgcaAAAATACCCTTGG
AAAGATTCTTTTAATACCTTAAATatagggtggacgaactaaaatcagtc
ttttaacccctggaaattttattttttattttcattttcattttccatat
agttccgaccccccccctttcttaaggaggggatgacaccttccaaaaaa
gtgaagaaggggggggggggtaaaaaattatcattaaaaaaggggggata
gcaaggagggggaatcgtttaaaaagggggggcctacatatattgtagat
tattttccagcactgttatgaaatttggtctgcatgaaaggaagtttttc
TGTTTGAGTAGTCTGAGTCAACAAGAAGCAAGAAAGAAGTTTGTTATTAT
TAGGGGGTAGCAGCAAGACGGGGCTTATCGGATCGCACTATACActatat
attttcgaaaatttagcccaaaaaccttgggggataggcatttttaaagg
ttgggggatgccaagaagggggggatCATTTAACAAGGGGAATCAGACCC
CTTTCgcactatgtttccaatttatTTAACGTTGCTCTGACATAGTTATA
ATAAAATACTACTAATTAATACCAGCTATATAGAATACAATAATATAGTA
tagaataataaataaaaaaaaacttttttttatatacatattttacaaag
acaaatatttgtaagatttaatttttctttcagtgtGGATTTAAAAGATT
CGGTAGGGGATTCGaacttaatattttcaggaatttGATTCCAGAGCAGG
CTTCCTCGAAATAAAAAGGATTGAGTTCCAAAACGAACAGAGCTTGCCTG
AGGTATTGACATTAAGATTTTGTTTCGGaagttgaatttgattttctttg
taaCGTAAATTTGTTGCATAAACTTTGGATTTAATTTGTTCTCAGATTTA
TAAACCTCACATAGTAAAAAGCATGAATTTCATGCACGGTTTTACATTCG
GCGTTTTGCAACAATACTTCATAATCATTTCTAAAATCACAGAGTATTAT
TCTCAAAGCCCGTTTGTCAACTTAGATACATACGAATTCTGTTTAAGCTC
CATACTCTTGATCTGGCtttagaaaaacttttaacccccttggaaaaaat
tttctcggATAACCCGCTTgcaatgttcgtccaccccttgtatggatata
aaatggaatggccccaGTTTGTTAATACCTTATTATGGCTGACTAAAATG
AAGTACAAATTTTAACGAGTCATAGCGATTGACCTTCACCTTTTTTATCA
TTGGAAATACCAAGCCCCTTAGCTTTTTTAACCTTTATTACTTCAACATG
CTCTTGCCAAGCTTTTTTGGGATTTTAATCTTTAAAGGCTGACAATTTTG
CTAAAACCTTCAAGGAAGTTTAGCACTACCgccaattcttgatatgcgta
agtttGATTACGTACGTAATGATTTTCACCATATATGgtaaaaagattac
gtcacagggatcaaaatcaaatttttacatCAAAGGGGTCAAATCATTAC
GTAATCAGACTTAAGCATATCAAGAATACGAAAATCAAAACGTTTGCTAC
GTTTACGAAATGATCATCATCTGTCGTTGTCTTTCACAGGTAACCATGGT
GAAGATGTGAAAGAGCTTTATTATTATCAAGATTCGACACCAACCCATTC
GTACATGAAATCACTGTACAAATATCCACAAAGTGAATTCCCTTACACTT
CTTTAGTGGAAGAGAACCAAAGGCGTGGCGTCGAACATCCTGAATATGAG
CTTCTTGATACAGGTACACAGTGTTTTTTCTATACCAAAACCCagcatgt
aatacatacctcaagcaaaaatttggcattttcgTCGAATCTTTTAGCAT
TGCTGGGTAATAAGTGGCTATTTAATCATTAaattgctctaaaaatggca
ttcttaggttaaggTTCTGTtaccaaattccatgatggtgatattaatat
cttaattttttgtccaatttcatcataaacattcttataaagtatattct
tattaaaaaagcgtTTATTTCCATCACTGAGCTTACAAGATTCTTTTTTC
ACAACCTCTTGTGCAATTGTTGAGAATTTATATCTGTTGGTCGCGAAATT
CGCAagttttaaatcttaaaaatcttCTGAAGCTGTAGCTTTCTATTTCG
ACCTAACTAAGAATCTTTGCCGATTTTAAATCACACGTAAACCTTGTTCG
tagtatatatatatatgagactaaaaaaattctattttatagCATCAATT
AGACCTtctcataaattacgtcacaagcATCAGTTTCCTTGTTTGACATT
ATCaccaaggtgattaactcccagcggattttgttgaaacttctttcttt
tcataaaaGAATTACCTTATTACATGGATGTAAATAGGTAATTGTTTGTA
tatgaggcaagtgatgttcgtgacgtaatttatgaaaaggtctatcttaa
ataaatgagaaaaaaatactAATATTAGAAgtaaactttaaataaaaaac
aacctTTTTAGGAGCGTTTGCGGACAACAAATATTATGACGTGACAGCAG
AATATGCGAAACGTTCTGCAGAAGAAGTGCTTGGTGTCATCACTGTCACC
AACAGATCCGATGAACATTCACAAATCACCGTCCTCCCTACACTATGGTT
TGTTTTCTAATCGTgaacactggagagtcttccacggtcccaacagctga
ttggttgaaagtgacgtatcgactgattttacgtcactttcaaccaatca
gctgttgggtctctGGTGTAATGCCAGAAGACAtagcagtggtgcatatc
atgaatactcaATGTTGGCTacttatattcatgatatgcaccattgcaat
gtcttctgatattacatcacagacccaacagctgattggttgtaagtgac
gtaaactcagtcaatacgtcacttgcaaccaatcagctgctgCGTCCGtg
aaagacattgcaatggtacatatcatgaatacctTAAGTTGATTAATTTT
GCGTggactttttttcgcgaatcGGCCTCTTTTTCAGccgatttcttttg
tttttctatgagttttttgccaattttacgaccaaaattcgcgaaaatcg
cgaaaattaatccacccGAAACTTGATCCACTGTTAAGGTAGCCTTGATT
AGTCTTTCGGAAAATACAGATCGCATTTATTGAGCGCCACTTTCTTTACA
GAAGTGATTTCCCTCTCCCCTCTATTTAAACCTAGTTCAAAACATTTTGG
TACCGAGGATTGAATGAAGAAGTCATTCGATGAAAAGTAATTTGTATTAA
AGAGTTTTAAATCCTAAGTTTTCACTCCTGAAATCCATTCTGAAATGTGT
TGTTAAACATCTACATCAGATGAATCTCGTATAATCTTTAGAATCAAACC
CTTTCAAAACAGGTACCGCAACACTTGGATATGGGGTTGTAAGCACGAAG
GATGTACAATGAAACCCTCCATCAAACAATTGGGAGAAGGTGTAGTCCAT
TGCAAACATGAAACACTACCGAAAAGTCGTTTTTATTGGGGCCCTGATCA
AAATGGCAAGCAACCCAAGTTACTGTTTACTGAAAACGAAACTAACTCCC
AGGTatttgaatttcatttcaatCCAAGATTCGTCTTAAAGCAGAAAATT
TTGCATTATTATATGCGTGTTTAAATTTAGTtagatagatatgagccctc
cgaatgcattTGGGATGAgtcctacccacgaaggagtaggaatcatGGAG
CTGccagacactgcgacttgacagatgcgagctgccaagccatggcgtat
accatgacactcgaacgacactgggaggGCGATGCTCACGCGAGAccgaa
ccttatgagtgccacTGCACGTCACAATGACTGTTTAATCTActcacact
cttgtatcagagtaatggttCTTAATTCCCCTCTCATGTTATGGATTGCC
TGGGCGAAGGTATATTCACtcgccaagtgaatcgtaggaACACGGTAGGT
ATCGAGCTCAGGCCTCCCAGGCGGGCGTCGaggatgataaccactatacc
actacgccttAAATTCGGTTTAAAGCCTCTaaaactcttggatgggaaat
gaagccacttatttttcATCTGAAACGCGTCACCCGCGTAATTTTCGCAA
AAACGCCAGATTGGAAGTAAAGTCCATAAccggatttcgaaaaaaatatt
cggcatcaaaacaaaaagaataagATTAAGTCCCTCATTCCAAAAGTGGC
TCAAGTCCTCCATAGATCTTTCTCTGTACATTTCAATCaattggagtaca
attttttataagaacaaactatataagaacataaggcttcgatggctaaa
tatcaagaacattttaaggcattGAGGACTCTAAAGCAAGCGATAatgaa
aatagacaaaaatactcaaaaaatggcgaaaataagaacatgttaagagc
atttttaggcttaaaattcaaaaagcttcaaaaattttNCATTTATTGAG
CGCCACTTTCTTTACAGAAGTGATTTCCCTCTCCCCTCTATTTAAACCTA
GTTCAAAACATTTTGGTACCGAGGattgaataatgaaattttaaagtccT
TCGATAAAAAGTAATTTGTATTTAAAGAGTTTTAAATCCTAAGTTTTCAC
TACTGAAATCCATTCTGAATTGTGTTGTTAAACATAAATCAGATGAATCT
CGTATAATCTTTAGAATCAAACCCTTTCAATACAGGTACCGCAACACTTG
GATATGGGGTTGTAAGCACGAAGGATGTACAATGAAACCCTCCATCAAAC
AATTGGGAGAAGGTGTAGTCCATTGCAAACATGAAACACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036702XLOC_036702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058264-exon-scaffold_309-1491911889:850116..850313TCONS_00058264-exon-scaffold_309-1491911889:850116..850313Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1510915933:850116..850313TCONS_00058264-exon-scaffold_309-1510915933:850116..850313Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1575043694:850116..850313TCONS_00058264-exon-scaffold_309-1575043694:850116..850313Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1491911889:851133..851302TCONS_00058264-exon-scaffold_309-1491911889:851133..851302Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1510915933:851133..851302TCONS_00058264-exon-scaffold_309-1510915933:851133..851302Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1575043694:851133..851302TCONS_00058264-exon-scaffold_309-1575043694:851133..851302Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1491911889:853005..853178TCONS_00058264-exon-scaffold_309-1491911889:853005..853178Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1510915933:853005..853178TCONS_00058264-exon-scaffold_309-1510915933:853005..853178Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1575043694:853005..853178TCONS_00058264-exon-scaffold_309-1575043694:853005..853178Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1491911889:853927..854062TCONS_00058264-exon-scaffold_309-1491911889:853927..854062Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1510915933:853927..854062TCONS_00058264-exon-scaffold_309-1510915933:853927..854062Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1575043694:853927..854062TCONS_00058264-exon-scaffold_309-1575043694:853927..854062Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1491911889:856151..856257TCONS_00058264-exon-scaffold_309-1491911889:856151..856257Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1510915933:856151..856257TCONS_00058264-exon-scaffold_309-1510915933:856151..856257Clytia hemisphaericaexon
TCONS_00058264-exon-scaffold_309-1575043694:856151..856257TCONS_00058264-exon-scaffold_309-1575043694:856151..856257Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:850116..856257 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.7115	1.80355	0	0.292705	0	0.106049	0	2.16175	0.680164	0	0.782351	1.12056	4.29195	3.08451	2.83191	3.84581	6.91748	8.26659	9.83527	5.1388	5.57575	5.20745	3.08564	2.27085	0	0	1.20112	0.657859	0.676272	0.25281
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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