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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058260 ID=TCONS_00058260|Name=TCONS_00058260|organism=Clytia hemisphaerica|type=transcript|length=1208bp
TGTTACCTCGCCCAAAATCCTTTCAATATCGATTTAGAGAGAGTCAATTG
CAgcttcactttcgttttcccttCCGGTTTCAAACCAGAAACTgtccatt
tcattttcattcttcTTCAACTCCAGGAAAGCGGGCGTTCCAGCATTGTT
GGATGCGGGAGAAATGGCGGCGTGTCCGGAGGTAGATCGACGTTCTATGA
TTACGTACCTTCACACAGTATACAAAGTCTTGTGGCACGATAAGCAAGAG
AAGAAGTAAGGAGACGACAAATGCTACGGGACCGGTATTTTGATACCTTT
GTGAGAGAAAGTTGAAGATTTCCAGTAATAAAGTCATATGCACCATTCAG
TATGGCCTGCTGTGGTcgcaaagaaatattttcttttgtatattttgaaa
tattctagaACGTGTACAATCATGGATATAAATTGGGAGACAAAAGCAAA
TTTCCATCTATTTCCCCACCTTCCCCCATTTGCAATGTTCAATGAACGGT
GGCACGGCCGTACACACTGAAGGGGGAAGGAGGGGGGTCTCTTTTCTACT
TTTTTACTGCAAATTCCTGTGTTTGTCTCAAACATGTTTGTCCGTGATTG
TAGACCCGTCCCGTTTTTAAGGAAAGTTATTTTGTTCGCTTCATAATAAA
TAACGGAGTATTTTGTAGAGACAAATCTGTAGCACACGGATACCATTCGG
GTTTCTCCCTGAGCCTCTTTTATTTATTCTAATCAAAAGTGTATTATAGC
ATAGTCAAAAGATACAAGGAAAGAAGCACTTTACTTTTGCAGTGATTTCC
CACCTtttttcgccattttgaaagTTTGTCATGCCCTCAACACGGACTGG
GCACTAGCAATATTGAGTTGAAAAAGCGTAATGTTTGTTTCCCAACTAGT
GTTTGTATCTTTTGACTATGATTATAGTTTTGAAAATCGAATGAAACTTA
GATGCGATACTTTATCgcgaattttgtttttgttaacacgaatttttaag
aatttcatTAAATATTGTAATGATTGTAGTAgccaatttttttgttcatt
ttcgcACCCTGTaagattgtaaatattttgTGATGACTTGATTTTAGAAT
CTCTTTTTATGATGCTTTTTGTACATTAGGAATTTTCCCaatatttttgt
aatataaAAGAAATAGCAACGTTCGAAAATGCTCGAACCAGAACAAATTT
AGTAGAAC Run BLAST on NCBI transcript from alignment at scaffold_309:625509..626773+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058260 ID=TCONS_00058260|Name=TCONS_00058260|organism=Clytia hemisphaerica|type=transcript|length=1265bp|location=Sequence derived from alignment at scaffold_309:625509..626773+ (Clytia hemisphaerica)
TGTTACCTCGCCCAAAATCCTTTCAATATCGATTTAGAGAGAGTCAATTG
CAgcttcactttcgttttcccttCCGGTTTCAAACCAGAAACTgtccatt
tcattttcattcttcTTCAACTCCAGGAAAGCGGGCGTTCCAGCATTGTT
GGATGCGGGAGAAATGGCGGCGTGTCCGGAGGTAGATCGACGTTCTATGA
TTACGTACCTTCACACAGTATACAAAGTCTTGTGGCACGATAAGCAAGAG
AAGAAGTAAGGAGACGACAAATGCTACGGGACCGGTATTTTGATACCTTT
GTGAGAGAAAGTTGAAGATTTCCAGTAATAAAGTCATATGCACCATTCAG
TATGGCCTGCTGTGGTcgcaaagaaatattttcttttgtatattttgaaa
tattctagaACGTGTACAATCATGGATATAAATTGGGAGACAAAAGCAAA
TTTCCATCTATTTCCCCACCTTCCCCCATTTGCAATGTTCAATGAACGGT
GGCACGGCCGTACACACTGAAGGGGGAAGGAGNCATTTGCAATGTTCAAT
GAACGGTGGCACGGCCGTACACACTGAAGGGGGAAGGAGGGGGGTCTCTT
TTCTACTTTTTTACTGCAAATTCCTGTGTTTGTCTCAAACATGTTTGTCC
GTGATTGTAGACCCGTCCCGTTTTTAAGGAAAGTTATTTTGTTCGCTTCA
TAATAAATAACGGAGTATTTTGTAGAGACAAATCTGTAGCACACGGATAC
CATTCGGGTTTCTCCCTGAGCCTCTTTTATTTATTCTAATCAAAAGTGTA
TTATAGCATAGTCAAAAGATACAAGGAAAGAAGCACTTTACTTTTGCAGT
GATTTCCCACCTtttttcgccattttgaaagTTTGTCATGCCCTCAACAC
GGACTGGGCACTAGCAATATTGAGTTGAAAAAGCGTAATGTTTGTTTCCC
AACTAGTGTTTGTATCTTTTGACTATGATTATAGTTTTGAAAATCGAATG
AAACTTAGATGCGATACTTTATCgcgaattttgtttttgttaacacgaat
ttttaagaatttcatTAAATATTGTAATGATTGTAGTAgccaattttttt
gttcattttcgcACCCTGTaagattgtaaatattttgTGATGACTTGATT
TTAGAATCTCTTTTTATGATGCTTTTTGTACATTAGGAATTTTCCCaata
tttttgtaatataaAAGAAATAGCAACGTTCGAAAATGCTCGAACCAGAA
CAAATTTAGTAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058260-exon-scaffold_309-1491911889:625509..625985 | TCONS_00058260-exon-scaffold_309-1491911889:625509..625985 | Clytia hemisphaerica | exon |
| TCONS_00058260-exon-scaffold_309-1510915933:625509..625985 | TCONS_00058260-exon-scaffold_309-1510915933:625509..625985 | Clytia hemisphaerica | exon |
| TCONS_00058260-exon-scaffold_309-1575043694:625509..625985 | TCONS_00058260-exon-scaffold_309-1575043694:625509..625985 | Clytia hemisphaerica | exon |
| TCONS_00058260-exon-scaffold_309-1491911889:626043..626773 | TCONS_00058260-exon-scaffold_309-1491911889:626043..626773 | Clytia hemisphaerica | exon |
| TCONS_00058260-exon-scaffold_309-1510915933:626043..626773 | TCONS_00058260-exon-scaffold_309-1510915933:626043..626773 | Clytia hemisphaerica | exon |
| TCONS_00058260-exon-scaffold_309-1575043694:626043..626773 | TCONS_00058260-exon-scaffold_309-1575043694:626043..626773 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:625509..626773 + |
Blast
The following BLAST results are available for this feature:
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