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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058205 ID=TCONS_00058205|Name=TCONS_00058205|organism=Clytia hemisphaerica|type=transcript|length=2684bpRun BLAST on NCBI protein sequence of TCONS_00058205-protein >TCONS_00058205-protein ID=TCONS_00058205-protein|Name=TCONS_00058205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=669bp MLETKSKMRIFNRYEPPSPSMQGDENIDESFLKDVDRLHDILPQPFRRIDRun BLAST on NCBI transcript from alignment at scaffold_308:180350..200557- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058205 ID=TCONS_00058205|Name=TCONS_00058205|organism=Clytia hemisphaerica|type=transcript|length=20208bp|location=Sequence derived from alignment at scaffold_308:180350..200557- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_308:180350..200557- >TCONS_00058205 ID=TCONS_00058205|Name=TCONS_00058205|organism=Clytia hemisphaerica|type=CDS|length=30150bp|location=Sequence derived from alignment at scaffold_308:180350..200557- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058205 vs. Swiss-Prot (Human)
Match: WDR93 (WD repeat-containing protein 93 OS=Homo sapiens GN=WDR93 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 8.869e-18 Identity = 153/681 (22.47%), Postives = 269/681 (39.50%), Query Frame = 3
Query: 78 PPSPSMQGDENIDESFLKDVDRLHDILPQPFRRIDKILTDIFDLAWIQIEQKESEKQYSDNIDSNTETVIYEE--ELFLPQKMKALELYFDNLFVGTTQQLQVYKMPGFQKVVYNQEDHCFEDVVQITTLIG--------DPASAILLLQHGKEQLSVVGFKDDIFHPICNILEESKEENPHKIHGTVLAKHSHYMAVSFEGKNENELLVYRLPVEDWLNTLRNMVISEEKLSPVVSANENLTTAXXXXXXXXXXXXXXXXXXTFARSPQILQLQPLKGKANT--HSMTTTLKETENSSNMIGQGNIHLLTSSFFENLQMQFD-SFTSGID--MSEHRLSMKPTCHFLKGQLSSNIF------KGPSIQESKCNAIGVWWENRNQFLVYSLQDT---KHSLQSVLPHSGKICLSSVNEETNLIAVALESKCITIWNRYTGEPINTLACE-----HDITMLQFTTVYDGSLQTKLIYGTSKGKLLQISYD------QRSGLSEPL--SMDSRSSKSKDQCNQVCATIPGPMNLLCIIWKSGHIFIYDVATCTILCQLE---LFNSELPLGGIDGNRIKLVFNKNTFVAFRDES------TDTGNRSRLFYFNTEEQSILKPFLSFVDTISEEEVEMHRNMD--------PLETQFVKFLRERIASERSLKTRMAAQHKDFIR 1958
PP+ ++ + L D D D LPQP+R I+K++ +FD +W IE++ + ++ S + +Y E+ L + + + D +F+G + +Y + K +Y E + T +G D I L KE L +V I + + SK+ K+ +++ + A +G + L VY+LP E WL L + ++ V N S LE ++ + I++++P K T S + ++ + G G H + S +E F+ S+ +D E LS T +FL L S +F KGPS +G+ W + F +YSL T K + V P + I +S ++ ++ + +A E +T+W+ G P+ A I L++ +V+ G S+ K + + D + SG P + R K D+ A +P ++ I K+G + + DVA I+C F E+P + + + F+ D S D G + +FYFN E +L + IS+ R++D PLE + +FL++ S R L+ + + + R
Sbjct: 27 PPTEKDWPKDDEQDHVLVDPDEELDSLPQPYRMINKLVNLLFDQSWEIIEERNALREAE---SSQIQPTVYPPLGEIQLNKMPNCMAVSQDYVFIGGAKGFSIYNLYS-AKQIYAWEKLKVDVTSIWATDLGNEILIAPVDEMGIIRLFYFYKEGLYLV-------KAINEVDDTSKQTTCIKME---ISQGGDFAAFLLQGAGDIWLDVYKLPKETWLKKLEHPQLTSNPKKKVRQPQLNSLGPISADPLEMDANVSFKGDIKLSLPVYIMKIKPPKPVTGTTFKSPLEVFAKIKDCYGL-GSGQNHFIKDSQWEQQAEIFNASYKKYLDREWEEEPLSTA-TFYFL---LPSCLFAMPPEVKGPS---GMACVLGIHWTRSHNFFLYSLNRTLKDKADPEGVWPCAAPIAVSQLSCSSSYLVLACEDGVLTLWDLAKGFPLGVAALPQGCFCQSIHFLKYFSVHKGQNMYPEGQVKSQMKCVVLCTDASLHLVEASGTQGPTISVLVERPVKHLDKTICAVAPVPALPGMVLIFSKNGSVCLMDVAKREIICAFAPPGAFPLEVPWKPV----FAVSPDHPCFLLRGDYSHETASTDDAGIQYSVFYFNFEACPLL-------ENISKNCTIPQRDLDNMAFPQALPLEKRCERFLQK---SYRKLEKNPEKEEEHWAR 671 The following BLAST results are available for this feature:
BLAST of TCONS_00058205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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