TCONS_00058192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058192
Unique NameTCONS_00058192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length724

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058192 ID=TCONS_00058192|Name=TCONS_00058192|organism=Clytia hemisphaerica|type=transcript|length=724bp
TTAGAACTTAGTTTTGCCAAAGTCAGTCAATTTATTGGCCAGCGAATTAA
ACGTACAGAATGTGTCAAAAGATAGTATTCAAATTGAAAACGATATTGAC
GCTTCTTTTGTTGGTGAAAGAGATGCTAGTCCTACGCGTCTGATTGGTCT
ATCTTTGCAACATGTGGATGTTCATTGTTATGGATGTTGGCGTATCTTAT
TTGTATGGAGATTTACGGATATATGTTCCCAATCGTAGAAGAGTCGGTCA
ACACAACTATTTTTGAAGACTTGTATAACTTTGTGTTTGGAAAAGTAAAA
CACATTCCGAAAATTGAAGTATGGAACGATATGTACAAGTTATGGGGCGT
AATTACATTGTACTTTTCTCGATGTTACATTGTTTCACCAAAACTATTTT
ATGCTCGTAGAATTCGAAACTCTTTGATTGTATTGGTTCATGTTTGCATG
GTGTCTGTTGCATTTTATTACTACAAGATAAACGGatTGACTTTTCAATC
GTTAATTTTGTCAAAACCGCCACCACCCCCGCCAACACCGAGTTTGATGG
AACAAATTACACCCATCATGCCCTACATTCTTATTCCTGTAGTTATCGTA
TTTACAGTTTATTGCGTCGCAATTTTTACAAGTACCGCGATATTAACAAC
ATTCGCAACTTTCTTTGCTATTGGAGTCAATACCATTTTAGGATGCCCTT
CAACTAAAGAGGATAAatcCAATG
Run BLAST on NCBI

protein sequence of TCONS_00058192-protein

>TCONS_00058192-protein ID=TCONS_00058192-protein|Name=TCONS_00058192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MLAYLICMEIYGYMFPIVEESVNTTIFEDLYNFVFGKVKHIPKIEVWNDM
YKLWGVITLYFSRCYIVSPKLFYARRIRNSLIVLVHVCMVSVAFYYYKIN
GLTFQSLILSKPPPPPPTPSLMEQITPIMPYILIPVVIVFTVYCVAIFTS
TAILTTFATFFAIGVNTILGCPSTKEDKSN
Run BLAST on NCBI

transcript from alignment at scaffold_308:66710..69012+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058192 ID=TCONS_00058192|Name=TCONS_00058192|organism=Clytia hemisphaerica|type=transcript|length=2303bp|location=Sequence derived from alignment at scaffold_308:66710..69012+ (Clytia hemisphaerica)
TTAGAACTTAGTTTTGCCAAAGTCAGTCAATTTATTGGCCAGCGAATTAA
ACGTACAGAATGTGTCAAAAGATAGTATTCAAATTGAAAACGATATTGAC
GCTTCTTTTGTTGGTGAAAGAGATGCTAGTCCTACGCGTCTGATTGGTCT
ATCTTTGCAACATGTGGATGTTCATTGTTATGGATGTTGGCGTATCTTAT
TTGTATGGAGATTTACGGATATATGTAAGTAGAATGATACCTTTGTATAA
CGTTTGTAATTTTTAAGTCATCTTTTTTGGTCGTTCGCTTTGAGAATGTT
AGATGAATAATACCCGAAGATACGTATTGCGGGGGGTTGAGCAGGGTGAG
CATAGCCCCATCACATCAAATCTTAAACCTTAAGTACTATGTTTTTATCT
AATTAGGGTTTTATTGAGTTTACAAGGTGCAAAAACatgaaagattttca
tttttgcctaaaaatcAACACAAATAGTGTACTGTGTGTACAGTGTACAG
GGAGTGAAAAATCGAGGAACATGTCAGAAAatagaaagttaaaaatattg
ttttgagCTGTGCGCATAGGCGATTGTGAAATTacccgggggggcactca
atTTTGAAAGCGACCGTAcgttcgacccttacagtgcaggaaagatttgg
ctgaaaatcgacccttatagtgcaatttttcgaaatttcttgCCCTTTTC
agagcaaaatttttgaaatttgtcaaattctacctcaaaatttggtattt
tctcaaattttacacccttagagtgcactttttcccaatTGCTcgcaaat
caacccttacagtgcactttccaaagtccaaaaaacctacccttaaagGG
CCGCACGTCTGGTAGGTCAattacctggagtgcccccctGCCCCGGGTGA
AATTACCTTTACTCTCATGAATGAAATTCTGCTCTATCATTTTCAGGTTC
CCAATCGTAGAAGAGTCGGTCAACACAACTATTTTTGAAGACTTGTATAA
CTTTGTGTTTGGAAAAGTAAAACACATTCCGAAAATTGAAGTATGGAACG
ATATGTACAAGTTATGGGGCGTAATTACATTGTACTTTTCTCGATGTTAC
ATTGTTTCACCAAAACTATTTTATGCTCGTAGAATTCGAAACTCTTTGAT
TGTATTGGTTCATGTTTGCATGGTGTCTGTTGCATTTTATTACTACAAGA
TAAACGGGTAAGTAGAgatcaccgtcaacaagaaacactCGTATATGATG
CTTATTGGATGAAAACCCGATTCCCCTTGAAAGTCGAATTAGAAAGCTTC
AACTATAGCCCTGGGGGAGTAAGCAGTGGGGGAAGTGTTTGTAGTGTTAA
GTTTGTTCCAATCTCTCCCGCCACTATTTTTTCCCGAATACCGCCGTGAT
GGCTGTAAACTATGCGCATATGTTTTTTTCTGCGTTACTACTATCCCatt
aacggacgatagcatcgtctaccgTAGCTATATATCTCCAAAATTAATCA
TACTGAAGCATGGATAAATTATTTCGGCTGGCTTTAGGCTCATTATACTG
TTTGTATATGATAATATCAATATATAAcattaattttttatattttagat
TGACTTTTCAATCGTTAATTTTGTCAAAACCGCCACCACCCCCGCCAACA
CCGAGTTTGATGGAACAAATTACACCCATCATGCCCTACATTCTTATTCC
TGTAGTTATCGTATTTACAGTTTATTGCGTCGCAATTTTTACAAGTACCG
CGATATTAACAACATTCGCAACTTTCTTTGCTATTGGAGTCAATACCATT
TTAGGATGCCCTTCAACTAAAGAGGATAAGTAAGTAAACCcgtttttata
ttaaaaaaaagtcatttttgacGACGATGCGACTTCTTCAGGCAACAAAC
TTGAAACTGCCAACACTTTCCTTCATTGGAAGATCGAATGATAATAGTTA
ATGGATGCAAGGTAGAAAAAGGCGGCTGTTTAAATTAGGGCTAAGCATAA
GGAAGCTTTATACCTAAACCTAcctctttttatcgttcttGTTGTCTACT
TTTAGcaaatgcaggattctttagattaaCCCCCACCCTATCAGAGCGTT
TGTctacttgatatttttttcgtgcAAATGTGAAGGGAATCGATGAAACA
GCTATTCGAAACCCAATGTATTTGAACTTATTCTTGTACCCTTGTCTATA
TTTGCGTTAAATGTAAACTTTTTTCCTAACTGGCATAAATTTGACCGGGA
CACTGATACAGGGTTTTAAAGAAGAactcttcttaaaattttcagatcCA
ATG

Coding sequence (CDS) from alignment at scaffold_308:66710..69012+

>TCONS_00058192 ID=TCONS_00058192|Name=TCONS_00058192|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_308:66710..69012+ (Clytia hemisphaerica)
ATGTTGGCGTATCTTATTTGTATGGAGATTTACGGATATATGTTCCCAAT
CGTAGAAGAGTCGGTCAACACAACTATTTTTGAAGACTTGTATAACTTTG
TGTTTGGAAAAGTAAAACACATTCCGAAAATTGAAGTATGGAACGATATG
TACAAGTTATGGGGCGTAATTACATTGTACTTTTCTCGATGTTACATTGT
TTCACCAAAACTATTTTATGCTCGTAGAATTCGAAACTCTTTGATTGTAT
TGGTTCATGTTTGCATGGTGTCTGTTGCATTTTATTACTACAAGATAAAC
GGatTGACTTTTCAATCGTTAATTTTGTCAAAACCGCCACCACCCCCGCC
AACACCGAGTTTGATGGAACAAATTACACCCATCATGCCCTACATTCTTA
TTCCTGTAGTTATCGTATTTACAGTTTATTGCGTCGCAATTTTTACAAGT
ACCGCGATATTAACAACATTCGCAACTTTCTTTGCTATTGGAGTCAATAC
CATTTTAGGATGCCCTTCAACTAAAGAGGATAAatcCAATATGTTGGCGT
ATCTTATTTGTATGGAGATTTACGGATATATGTTCCCAATCGTAGAAGAG
TCGGTCAACACAACTATTTTTGAAGACTTGTATAACTTTGTGTTTGGAAA
AGTAAAACACATTCCGAAAATTGAAGTATGGAACGATATGTACAAGTTAT
GGGGCGTAATTACATTGTACTTTTCTCGATGTTACATTGTTTCACCAAAA
CTATTTTATGCTCGTAGAATTCGAAACTCTTTGATTGTATTGGTTCATGT
TTGCATGGTGTCTGTTGCATTTTATTACTACAAGATAAACGGatTGACTT
TTCAATCGTTAATTTTGTCAAAACCGCCACCACCCCCGCCAACACCGAGT
TTGATGGAACAAATTACACCCATCATGCCCTACATTCTTATTCCTGTAGT
TATCGTATTTACAGTTTATTGCGTCGCAATTTTTACAAGTACCGCGATAT
TAACAACATTCGCAACTTTCTTTGCTATTGGAGTCAATACCATTTTAGGA
TGCCCTTCAACTAAAGAGGATAAatcCAATATGTTGGCGTATCTTATTTG
TATGGAGATTTACGGATATATGTTCCCAATCGTAGAAGAGTCGGTCAACA
CAACTATTTTTGAAGACTTGTATAACTTTGTGTTTGGAAAAGTAAAACAC
ATTCCGAAAATTGAAGTATGGAACGATATGTACAAGTTATGGGGCGTAAT
TACATTGTACTTTTCTCGATGTTACATTGTTTCACCAAAACTATTTTATG
CTCGTAGAATTCGAAACTCTTTGATTGTATTGGTTCATGTTTGCATGGTG
TCTGTTGCATTTTATTACTACAAGATAAACGGatTGACTTTTCAATCGTT
AATTTTGTCAAAACCGCCACCACCCCCGCCAACACCGAGTTTGATGGAAC
AAATTACACCCATCATGCCCTACATTCTTATTCCTGTAGTTATCGTATTT
ACAGTTTATTGCGTCGCAATTTTTACAAGTACCGCGATATTAACAACATT
CGCAACTTTCTTTGCTATTGGAGTCAATACCATTTTAGGATGCCCTTCAA
CTAAAGAGGATAAatcCAATATGTTGGCGTATCTTATTTGTATGGAGATT
TACGGATATATGTTCCCAATCGTAGAAGAGTCGGTCAACACAACTATTTT
TGAAGACTTGTATAACTTTGTGTTTGGAAAAGTAAAACACATTCCGAAAA
TTGAAGTATGGAACGATATGTACAAGTTATGGGGCGTAATTACATTGTAC
TTTTCTCGATGTTACATTGTTTCACCAAAACTATTTTATGCTCGTAGAAT
TCGAAACTCTTTGATTGTATTGGTTCATGTTTGCATGGTGTCTGTTGCAT
TTTATTACTACAAGATAAACGGatTGACTTTTCAATCGTTAATTTTGTCA
AAACCGCCACCACCCCCGCCAACACCGAGTTTGATGGAACAAATTACACC
CATCATGCCCTACATTCTTATTCCTGTAGTTATCGTATTTACAGTTTATT
GCGTCGCAATTTTTACAAGTACCGCGATATTAACAACATTCGCAACTTTC
TTTGCTATTGGAGTCAATACCATTTTAGGATGCCCTTCAACTAAAGAGGA
TAAatcCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036670XLOC_036670Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058192-exon-scaffold_308-1491911889:66710..66933TCONS_00058192-exon-scaffold_308-1491911889:66710..66933Clytia hemisphaericaexon
TCONS_00058192-exon-scaffold_308-1510915933:66710..66933TCONS_00058192-exon-scaffold_308-1510915933:66710..66933Clytia hemisphaericaexon
TCONS_00058192-exon-scaffold_308-1575043694:66710..66933TCONS_00058192-exon-scaffold_308-1575043694:66710..66933Clytia hemisphaericaexon
TCONS_00058192-exon-scaffold_308-1491911889:67656..67916TCONS_00058192-exon-scaffold_308-1491911889:67656..67916Clytia hemisphaericaexon
TCONS_00058192-exon-scaffold_308-1510915933:67656..67916TCONS_00058192-exon-scaffold_308-1510915933:67656..67916Clytia hemisphaericaexon
TCONS_00058192-exon-scaffold_308-1575043694:67656..67916TCONS_00058192-exon-scaffold_308-1575043694:67656..67916Clytia hemisphaericaexon
TCONS_00058192-exon-scaffold_308-1491911889:68308..68538TCONS_00058192-exon-scaffold_308-1491911889:68308..68538Clytia hemisphaericaexon
TCONS_00058192-exon-scaffold_308-1510915933:68308..68538TCONS_00058192-exon-scaffold_308-1510915933:68308..68538Clytia hemisphaericaexon
TCONS_00058192-exon-scaffold_308-1575043694:68308..68538TCONS_00058192-exon-scaffold_308-1575043694:68308..68538Clytia hemisphaericaexon
TCONS_00058192-exon-scaffold_308-1491911889:69005..69012TCONS_00058192-exon-scaffold_308-1491911889:69005..69012Clytia hemisphaericaexon
TCONS_00058192-exon-scaffold_308-1510915933:69005..69012TCONS_00058192-exon-scaffold_308-1510915933:69005..69012Clytia hemisphaericaexon
TCONS_00058192-exon-scaffold_308-1575043694:69005..69012TCONS_00058192-exon-scaffold_308-1575043694:69005..69012Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058192-proteinTCONS_00058192-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_308supercontigscaffold_308:66710..69012 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.116324	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0789866	0.0718103	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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