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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058127 ID=TCONS_00058127|Name=TCONS_00058127|organism=Clytia hemisphaerica|type=transcript|length=1921bp ctttgatcaaaaGGTTCTCCTCAAcaagttttgattttaatttaacATCC CGTCGCTGACGTATCAAGTTAGGATTTCATAAATTGCAATACGGAAtaaa ttatcattattttttgggGACTTTGAGGCAAATTACATCACTTATATCAT TTTATTGAGCAAAAGGTAAAATTATTTCGGATAAAGATATGGGAGTTAAT GAAGTGGCAGATCGCAACAGTCCACCAGCATTAAACATGGAGACTCTACT GCAAAACAAATCAGACATCAAATTGAACGGAAGCACAGGAAAATATACCG AAGATGtgcaagaagaagaagattATGACTTTTACCGATTCATTGTATCT GATTTCCATGGCATTGCTCGCAGCAAGTTGGTTACCAAATCTGCGTATAA ATACATGAAGAAACGAGGTCCTGGAATCGCCTGGAAAACCGTTTTGTTGT CCTTCGATAACTACTTCAATTGTGAAGCGAAAAGGTTGGATGGAGAAAGA TGTACTGATGCTAGGTTAACTCCAGCTGAAGATTTGAGCGTGCCGCGATC ACTTCCTTGGGCAGGAGAAGGGTATAAGATTGCAGGTGTTTTGTGTGAGA CATGGTGGGGTATTGATGGGTTGCGACAACAAGCGTGCCCACGATACATG GCGCGTCGACTATGTGATCAACTAGAATCGGAATTTGGTCTTCGCATTTT CCACGGTACCGAGATGGAGTTCACCTTGTTCAAAGAAAAGGGTGTGCCAG AGTTCGATGATGGTGGTTTGTACATTCCACAGGAGTTGGATACAGTGTGC AAAGAACTTCTCCCGTTATCCAAACACTGTGAAGCTGCTGGTATCCCTAT TGAAACATTGCAAACTGAATTCGGTCCTGGACAGTTGGAGgtTGTTTTAA AACCAGCATACGGAATCGAGGGAGCAGACAACAGTTTCTTATTCAAATGT GCAGCTAAAGAAATCCTTGCAAAACCTGGCTTCCATGGACGCGCAACATT TATGTCTAAACCAATCATCGACAAAGTTGGAAGCTCCAACCATTTCAATC ACTCTCTTTGGAAAGTAAAGGACAATGGTGAACTAGAAGACTCGATGTGG GATGGAACACAGGAGAGTAAACTAACCAAGACTGCTCAACACTGGCTGGC TGGAATTCTCAAACACACACCAGCCCTCGCAGccatttttaaCCCCACTG TCAATGATTGGAGAAGATTACATATCACAGCTAGTACTCGCGATATCACC ACTCCACATTACATCACATGGGGTATCGAAAACCGATTAACATTGATTCG TGTTATTGCTCGAGGTGCTGGTAAAGCTACATATCTGGAGAACCGGTTAC CCGGGGCAACCATGAATCCGTATCTTGCACTGGCCGGTATGGTTGCTGCC GGTATTGATGGTATCCGGAACAAAATCGAATTACCGGCTCCTGGAAATAC GGAAAATGAATTCGGAGTTTTGCCAGGTACTCTTGAAGAGGCTTTGGATG CACTGAAGAGTAGTAGTGTCATGCGCGAGCATCTTGGTGATGAATTTGTC AATTGGTTTGTGTGTGCCAAGGAGAAAGAAATCGAAGTCTTGAATGAATA CACAGATAAGAATGGGGGCGATTCTTTCCAAACTGAAGTTGACTTCTATT CCAAATGGATCTAAATTGTGTTTTAATGTTACTGTTTTATTTTAATATCT TTAtctggaaaaaaagaaagaaagaaaagactGTATTCTAAAAGCTAATC ACGTGTCAAAGAGACATTATAAGGAACTATCAATTCTTGGAAATGAAAAT GTAgaatagaaatattttaaatttatatGATAAAGCAAAGAAAACACCAC ACTGCATTTTATAGATGTAAAAGGGGAGCTGGCCATAATAGGGAAACTAC CTTTTTGAAGGAACAATCTTT Run BLAST on NCBI transcript from alignment at scaffold_307:131281..138467+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058127 ID=TCONS_00058127|Name=TCONS_00058127|organism=Clytia hemisphaerica|type=transcript|length=7187bp|location=Sequence derived from alignment at scaffold_307:131281..138467+ (Clytia hemisphaerica) ctttgatcaaaaGGTTCTCCTCAAcaagttttgattttaatttaacATCC
CGTCGCTGACGTATCAAGTTAGGATTTCATAAATTGCAATACGGAAtaaa
ttatcattattttttgggGACTTTGAGGCAAATTACATCACTTATATCAT
TTTATTGAGCAAAAGGTAAAATTATTTCGGATAAAGATATGGGAGTTAAT
GAAGTGGCAGATCGCAACAGTCCACCAGCATTAAACATGGAGACTCTACT
GCAAAACAAATCAGACATCAAATTGAACGGAAGCACAGGAAAATATACCG
AAGATGtgcaagaagaagaagattATGACTTTTACCGATTCATTGTATCT
GATTTCCATGGCATTGCTCGCAGCAAGTTGGTTACCAAATCTGCGTATAA
ATACATGAAGAAACGAGGTCCTGGAATCGCCTGGAAAACCGTTTTGTTGT
CCTTCGATAACTACTTCAATTGTGAAGCGAAAAGGTTGGATGGAGAAAGA
TGTACTGATGCTAGGTTAACTCCAGCTGAAGATTTGAGCGTGCCGCGATC
ACTTCCTTGGGCAGGAGAAGGGTATAAGATTGCAGGTGTTTTGTGTGAGA
CATGGTGGGGTATTGATGGGTTGCGACAACAAGCGTGCCCACGATACATG
GCGCGTCGACTATGTGATCAACTAGAATCGGAATTTGGTCTTCGCATTTT
CCACGGTACCGAGATGGAGTTCACCTTGTTCAAAGAAAAGGGTGTGCCAG
AGTTCGATGATGGTGGTTTGTACATTCCACAGGAGTTGGATACAGTGTGC
AAAGAACTTCTCCCGTTATCCAAACACTGTGAAGCTGCTGGTATCCCTAT
TGAAACATTGCAAACTGAATTCGGTCCTGGACAGTTGGAGGTAGGCTTTA
GTTTTTCCTTTTCCTCTTTGGTAAAATTTCCCTTCATCAGTCACCTATGT
CTCACTGTTTGAAGCTTGAGATTTCTGTGATAAAGCTTGACTAACTATAC
GTTTCTTTAGTAGAAGATTTTCCGGTAAAATATGACAAAAGCGTGGACCT
TCAACTCAAGTCACATATAGGATCTTTCAGTGCAAATTAAGTTTCAAAAG
CTAAATGATAACACAGTAATAGAAATCTAAGAAAAGGAGACGAGATTCTT
CATACAGAAAAAGGGATAGGTTGATTCAACCGTGGATGTTATATGGTGAT
caagactttacaaataaatatcccttatttttttctttaggtTGTTTTAA
AACCAGCATACGGAATCGAGGGAGCAGACAACAGTTTCTTATTCAAATGT
GCAGCTAAAGAAATCCTTGCAAAACCTGGCTTCCATGGACGCGCAACATT
TATGTCTAAACCAATCATCGACAAAGTTGGAAGCTCCAACCATTTCAATC
ACTCTCTTTGGAAAGTAGGTTTAGTACTTTTTAGTTATTAAAGAATATCA
TATGTTTCTAAGATTTTATGTTTTGTGAGGTGAATGGAATATGAAGGGGC
AGGGTTCGAACCCAGGAAAAGCGTGGTAAGAATTATATGGTCGCCAAGTA
ACACTGCCTCACTGCCCTGGTGgaaattttttcctcagtggggataaaaa
ttcctattgaaattccaattgGGATATAAATTTCATTGTTGCAAGGTTGA
AAAAtacagtggggatggttttggagtgcaaacGGGACGAAAGAGGGacg
aaaattttgccaaattttttcATGGGGCTGggatcccagtgggtctgtaa
cACAGGGGTGTAGTAACTATCAAGAAAAATACTCTATCGGATTGTGCGAA
AGATCCTCCTTGTTATGGGCCATATTATTTTTCTTGAAGGTGTAGTGAAG
GTGTAACTTCTCGGTCGAGGTCAGGTCTCTCTTAAGAAAACTGTGCATTA
TTATCAAAACGTAGTAATAGAAACAACAAACTTTTCTTAAACACTCTATT
TCAGGTAAAGGACAATGGTGAACTAGAAGACTCGATGTGGGATGGAACAC
AGGAGAGTAAACTAACCAAGACTGCTCAACACTGGCTGGCTGGAATTCTC
AAACACACACCAGCCCTCGCAGGTAACCTATCGTCATAGCACACCAAAAT
TGAAAGTCACACTTATGTGTATtatcaagaaaaaattcaaaattcttaaG
ACCATAAAAAACGGTTGATTTGAGATAACAATCATGGCATTCTTAAATAT
AGAAACATTTTTTCGAAATGGTGCTTATGGTGACGTGAATGTATAAATGg
gtgaaatttaatttttcgtACAACCTTTGTTATCTCGGACAATCTTCGGC
AGGATATGTCCTTTTTACAAATATCTTatggaaaatatcaaaatgatcAA
CTGATGATGAAGGGGCAAAATATCATATGACTATGAGCAATTTATGAAAA
ACTTCATGAACATTTGAATTACCAAAATACATTTTGAGGTTAACAAACAC
CTAAATTTAAACcacattttctttcattttcagccatttttaaCCCCACT
GTCAATGATTGGAGAAGATTACATATCACAGCTAGTACTCGCGATATCAG
TAAGTCTTGTGACAAATACCCATAATGCCCTCGCAAAATTAAAACCCAAA
ATTTCTAAGGTGTTCAAAAGGTTTTCTCGAGTAAGTCTGCCACCACATTG
GGCGACCCAAAAGGTTCCTCTTTTGACATACCAAAAGGTATGGGAGGTGC
CACACTCCGTTTCTTCACTACGTCTTTTCTCTCGAATACCCATTTTctag
taaaacaaaaaatttcagatGTCTCCTTAGCCGGTGACTACAGCATAATA
AAATCACTCAAAAGCTCTTACCTCAAAAGTTTAGCAGCTTTGATTTTACA
TCGAATAGCCTATCGTTTGAAGTCTTTCAACCTTTAAAAACGGGATAGAA
AACCTTAGAATTGAAAAGAAACTCAATACTCCCGACACGGTTACTTTTGA
ATAATAAcgtaattttattaaaataatatCACGTTGTCAACAGAACAAAG
CATTGAGCTTTAAGCCCTGAAGGAATCTGTTGGAACCTCTTTCTGTCTGG
GCTTTAAACCCAGTTGAATAAAGAACCCGAACCACTCCAGCCTTCTAAAC
AGTTATAAATATATAAACATACTCACCGTGAATAAATTCTTTTTTAGCCA
CTCCACATTACATCACATGGGGTATCGAAAACCGATTAACATTGATTCGT
GTTATTGCTCGAGGTGCTGGTAAAGCTACATATCTAGAAAACCGGTTACC
CGGGGCAACCATGAATCCGTATCTTGCACTGGCTGGTATGGTTGCTGCCG
GTATTGATGGTATCCGGAACAAAATCGAATTACCGGCTCCTGGAAATACG
GAAAATGAATTCGGAGTTTTGCCAGGTACTCTTGAAGAGGCTTTGGATGC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATTTTCTTCTAAACACATgcaaaatcaggcaaaaactTGCTTTCTTG
AACAAAGTAGCGCTTTTTTGAACGAAGTAGCCTTACTGTCAAGAATGATT
GTGAATAATCGCtaggtaggaaattaaaatgctagggtgaaaagtttcct
tttgagttgttcttcaaaatgaacATTATTTTGGGACCCCGGTCCAGGCC
CTGCGATGCCGGTTTTGGTCCATAGGCTAGGGCTAAGTAGAAGGTTTGAA
AATCTTCAATATTCTTAAtataaatatttctttataaattaaaatgaaaa
acaagcGATGTACCAGATCTCATTCTTTAATATATAAAGCTCGCGTTTAA
AAATCTCAATATTTACAAAATCACACAAAATCATACAAAAAACGGTCCCA
AAAACCAACAGCCTGAGAAAAATATATTAGATTTCTATAATACAAGTTTG
TAGTGCATAAAAATTACACTATAATAAAATTGTTAAGGCGTAGCAATTAT
TGAAAAAGCAATCATTGGGAAGCTTGGAATGTCTTAACAATAATTGTATA
GACCAATGAAAATGTAGCGAAAAGCACAGATGATCATTacagatttttgt
ttatttgaccAGAAAGTTACCAATAGCTAGGATACCATATGAGATAATTT
AAGGATATGTTGTGTATGAATAGTTGTAAACAGTATCATTAAAAATGTAA
TATATAAATGTGCATGTGATTAAAAGGGTTAGTTATAAACATTACAATTA
CATACAAAATAAGCCACGAATaaatcatttcatttcatttatatatataa
aaaatttcccccaaaaaatgAGTCGGTCAATAAACAGGGTAAggtatgaa
gaaaaagaaaatacaaatcttcctaaaaaaatactgtataaaggcttggg
gacacaagaagttttttttcgcatTAGTGCAATGCAACATACTTCATctc
accaacctgaaacgctttctcgtgtcttcaccccatttttctttcgacca
ataaaagtgaaatctcacttttgtccctgggacagtGGAACAAAATtaat
tcgaatcaattttgctccattgtcccaggggcAAAagcagcgtgtctttt
gggtatttccctcactttttgtcccatgaaacaaaaacaaaaaaccatgg
ggaacgcactttttttcttgtgttgNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTAGAATTGAAAAGAAACTCAATACTCCC
GACACGGTTACTTTTGAATAATAACGTAATTTTGTTAAAATAATATCACG
TTGTCAACAGAACAAAGCATTGAGCTTTAAGCCCTGAAGGAATCTGTTGG
AACCTCTTTCTGTCTGGGCTTTAAACTCAGTTGAATAAAGATCCCGAACC
ACTCCAGCCTTCTAAACAGTTATAAATATATAAACACACTCACCGTGAAT
AAATTCATTTTTAGCCACTCCACATTACATCACGTGGGGTATCGAAAACC
GATTAACATTGATCCGCGTTATCGCCCGAGGCGCCGGTAAAGCTACATAT
CTGGAGAACCGGTTACCCGGGGCAACCATGAATCCGTATCTTGCACTGGC
CGGTATGGTTGCTGCCGGTATTGATGGTATCCGGAACAAAATCGAATTAC
CGGCTCCTGGAAATACGGAAAATGAATTCGGAGTTTTGCCAGGTACTCTT
GAAGAGGCTTTGGATGCACTGAAGAGTAGTAGTGTCATGCGCGAGCATCT
TGGTGATGAATTTGTCAATTGGTTTGTGTGTGCCAAGGAGAAAGAAATCG
AAGTCTTGAATGAATACACAGATAAGAATGGGGGCGATTCTTTCCAAACT
GAAGTTGACTTCTATTCCAAATGGATCTAAATTGTGTTTTAATGTTACTG
TTTTATTTTAATATCTTTAtctggaaaaaaagaaagaaagaaaagactGT
ATTCTAAAAGCTAATCACGTGTCAAAGAGACATTATAAGGAACTATCAAT
TCTTGGAAATGAAAATGTAgaatagaaatattttaaatttatatGATAAA
GCAAAGAAAACACCACACTGCATTTTATAGATGTAAAAGGGGAGCTGGCC
ATAATAGGGAAACTACCTTTTTGAAGGAACAATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058127-exon-scaffold_307-1491911889:131281..132170 | TCONS_00058127-exon-scaffold_307-1491911889:131281..132170 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1510915933:131281..132170 | TCONS_00058127-exon-scaffold_307-1510915933:131281..132170 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1575043694:131281..132170 | TCONS_00058127-exon-scaffold_307-1575043694:131281..132170 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1491911889:132521..132694 | TCONS_00058127-exon-scaffold_307-1491911889:132521..132694 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1510915933:132521..132694 | TCONS_00058127-exon-scaffold_307-1510915933:132521..132694 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1575043694:132521..132694 | TCONS_00058127-exon-scaffold_307-1575043694:132521..132694 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1491911889:133235..133352 | TCONS_00058127-exon-scaffold_307-1491911889:133235..133352 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1510915933:133235..133352 | TCONS_00058127-exon-scaffold_307-1510915933:133235..133352 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1575043694:133235..133352 | TCONS_00058127-exon-scaffold_307-1575043694:133235..133352 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1491911889:133764..133829 | TCONS_00058127-exon-scaffold_307-1491911889:133764..133829 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1510915933:133764..133829 | TCONS_00058127-exon-scaffold_307-1510915933:133764..133829 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1575043694:133764..133829 | TCONS_00058127-exon-scaffold_307-1575043694:133764..133829 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1491911889:134428..134509 | TCONS_00058127-exon-scaffold_307-1491911889:134428..134509 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1510915933:134428..134509 | TCONS_00058127-exon-scaffold_307-1510915933:134428..134509 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1575043694:134428..134509 | TCONS_00058127-exon-scaffold_307-1575043694:134428..134509 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1491911889:137877..138467 | TCONS_00058127-exon-scaffold_307-1491911889:137877..138467 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1510915933:137877..138467 | TCONS_00058127-exon-scaffold_307-1510915933:137877..138467 | Clytia hemisphaerica | exon |
TCONS_00058127-exon-scaffold_307-1575043694:137877..138467 | TCONS_00058127-exon-scaffold_307-1575043694:137877..138467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_307 | supercontig | scaffold_307:131281..138467 + |
Blast
BLAST of TCONS_00058127 vs. Swiss-Prot (Human)
Match: LGSN (Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 4.629e-46 Identity = 131/449 (29.18%), Postives = 214/449 (47.66%), Query Frame = 3
Query: 279 GSTGKYTEDVQEEEDYDFYRFIVSDFHGIARSKLVTKSAYKYMKKRGPGIAW-KTVLLSFDNYFNCEAKRLDGERCTDARLTPAEDLSVPRSLPWAGEGYKIAGVLCETWWGIDGLRQQACPRYMARRLCDQLESEFGLRIFHGTEMEFTLFKEKGVPEFDDGGL-------YIPQELDTVCKELLPLSKHCEAAGIPIETLQTEFGPGQLEVVLKPAYGIEGADNSFLFKCAAKEILAKPGFHGRATFMSKPIIDKVGSSNHFNHSLWKVKDNGELEDSMWDGTQESKLTKTAQHWLAGILKHTPALAAIFNPTVNDWRRLHITASTRDITTPHYITWGIENRLTLIRVIARGAGKATYLENRLPGATMNPYLALAGMVAAGIDGIRNKIELPAPGNTENEF-----GVLPGTLEEALDALKSSSVMREHLGDEFVNWFVCAKEKEIE 1586
S K+ + F RF +D HG++RSK + A+ + +K G+ + L N + E + C ++ + +LS R LPWA + A V+C+T+ + G PRY+A+R L++ G + +F +F GVPE + + ++ +EL+ H G +E+ + PGQ+E+ P +GI ADN+F + KE+ K + + F+ D S +HSLW V + S GT++ LT T + WLAG+LKH+ AL+ + P+V+ +R + +D+ TWG + + + G K T +EN+L AT NPYL LA VAAG+DG+ + E+ A + +F +P LE+AL AL+ +R+ LG+ F+ +FV K+ E+E
Sbjct: 70 SSRMKHIRQAMAKNRLQFVRFEATDLHGVSRSKTI--PAHFFQEKVSHGVCMPRGYLEVIPNPKDNEMNNIRAT-CFNSDIVLMPELSTFRVLPWAD---RTARVICDTF-TVTGEPLLTSPRYIAKRQLSHLQAS-GFSLLSAFIYDFCIF---GVPEILNSKIISFPALTFLNNHDQPFMQELVDGLYH---TGANVESFSSSTRPGQMEISFLPEFGISSADNAFTLRTGVKEVARKYNYIA-SFFIETGFCD----SGILSHSLWDVDRKKNMFCST-SGTEQ--LTITGKKWLAGLLKHSAALSCLMAPSVSCRKRY--SKDRKDLKKSVPTTWGYNDNSCIFNIKCHGE-KGTRIENKLGSATANPYLVLAATVAAGLDGLHSSNEVLAGPDESTDFYQVEPSEIPLKLEDALVALEEDQCLRQALGETFIRYFVAMKKYELE 493
The following BLAST results are available for this feature:
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