TCONS_00058111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058111
Unique NameTCONS_00058111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058111 ID=TCONS_00058111|Name=TCONS_00058111|organism=Clytia hemisphaerica|type=transcript|length=710bp
gaaaaatattgcacaattaagaaaaaattgtactcttattaagaaccaat
cagattcCTTTATTTTAATTAGGTTCAGTATTATAGTCAATTTTACATTG
ATATCTCTTCATCCCTAAATCAACTCAACCAGGTTCATAATTGATTATCA
ATCCATGCATTTCTATTTTCATCGATTGatatcaatttttcaatttacaa
GTTCAAAAAGTagtactttttgataaaataataaataatagttTTTCAAA
ACTTCAAGAAATAATTATATCTGTAATAGAAATAGACTCACCTTTCTTTT
ACTCAATATCTGCAATCCATcaaatttaggatttaaaacaTCATGCTGTC
CAAAAATATTGCTTTAACGTCTTTGTGTTGGTCTTGGTTCCActaatttt
cctattttcagtcattttgagtAGAAAAGCCAACACTTTATACTGCCAAA
AGTGTTGTGTTTCCCATAACACGGTGCGAGAAACAAATTCCAGATGGCAC
TTTTGTAGTGTTTGTAATTTCACTGTCAAATACTGATTTCCAAGAAAttc
tttgaagtttgttttgatctgtAATGGATCTGCATCAGATAAAAAACATG
GGTTGAGGTTGAAACGTTGTTGGATACATGTACATGTTCAATGttctaga
aaaaatttattGGTGCAGAATGTCAATGTCAATTTTTGTTCATAAATTCA
TTCACTGTTg
Run BLAST on NCBI

transcript from alignment at scaffold_305:233876..234585

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058111 ID=TCONS_00058111|Name=TCONS_00058111|organism=Clytia hemisphaerica|type=transcript|length=710bp|location=Sequence derived from alignment at scaffold_305:233876..234585 (Clytia hemisphaerica)
cAACAGTGAATGAATTTATGAACAAAAATTGACATTGACATTCTGCACCa
ataaattttttctagaaCATTGAACATGTACATGTATCCAACAACGTTTC
AACCTCAACCCATGTTTTTTATCTGATGCAGATCCATTacagatcaaaac
aaacttcaaagaaTTTCTTGGAAATCAGTATTTGACAGTGAAATTACAAA
CACTACAAAAGTGCCATCTGGAATTTGTTTCTCGCACCGTGTTATGGGAA
ACACAACACTTTTGGCAGTATAAAGTGTTGGCTTTTCTactcaaaatgac
tgaaaataggaaaattagTGGAACCAAGACCAACACAAAGACGTTAAAGC
AATATTTTTGGACAGCATGAtgttttaaatcctaaatttgATGGATTGCA
GATATTGAGTAAAAGAAAGGTGAGTCTATTTCTATTACAGATATAATTAT
TTCTTGAAGTTTTGAAAaactattatttattattttatcaaaaagtactA
CTTTTTGAACttgtaaattgaaaaattgatatCAATCGATGAAAATAGAA
ATGCATGGATTGATAATCAATTATGAACCTGGTTGAGTTGATTTAGGGAT
GAAGAGATATCAATGTAAAATTGACTATAATACTGAACCTAATTAAAATA
AAGgaatctgattggttcttaataagagtacaattttttcttaattgtgc
aatatttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036624XLOC_036624Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058111-exon-scaffold_305-1491911889:233876..234585TCONS_00058111-exon-scaffold_305-1491911889:233876..234585Clytia hemisphaericaexon
TCONS_00058111-exon-scaffold_305-1510915933:233876..234585TCONS_00058111-exon-scaffold_305-1510915933:233876..234585Clytia hemisphaericaexon
TCONS_00058111-exon-scaffold_305-1575043694:233876..234585TCONS_00058111-exon-scaffold_305-1575043694:233876..234585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_305supercontigscaffold_305:233876..234585 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0690547	0.0801791	0	0.286489	0.0754626	0.273127	0.255698	0.119347	0.0739152	0	0	0.188384	0.0978195	0.120631	0.345216	0.637916	0.272435	0.978597	0.787716	0.958536	0.500936	0.162388	0.221451	0	0	0.873899	0.41451	0.864576	0.400394
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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