TCONS_00057983 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00057983
Unique Name	TCONS_00057983
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	642

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_302:319140..324325-

transcript sequence

>TCONS_00057983 ID=TCONS_00057983|Name=TCONS_00057983|organism=Clytia hemisphaerica|type=transcript|length=642bp
GGAAAAGCTTTGTTTCGGATGTCTTGAAAAAGGTCATCTTGCTTCAAGTT
GTAAAAATCGAAGAACTTGTCTGGTTTGTAATAAAAAGCATCCAACTATT
ACTCATGGAATGAGATTTCGTCATCCTCCACGTCTACCTCCTAAAGACTC
GAAGAAAGACAGCTCTGAATCTAAAGAACCTGATGTCAGACCTTGTCCTA
AAAAGCCTGAAGTTTCAAATCCACCTGTTAGTTGTATTTTGAATAAggat
tctgaaaaaaaacattagtaTGTGTGTTGTTCCAGTtatattacgtcatg
aattgTCTAAATCTGACATTGTTACATTTGCTGTGCTTGACAATTGTTCA
NTTATTAAGCTTATACTTCAGTACAGCTTATGCAGAAATTTGGGAGAAAT
TGACTCATTTTTCATAAGGTTATGGCCCGTTGCAGGTGTTAGCCGTTTAC
CATTTCCCTTGTTTTGTGCTTGACCGGTGCCAGCCCGACAACTGTGGTTT
TTATAAAATGGAGTATAGACACATATTCATTCAGAAAAAACCTTTACTAA
GACTCAATCAAGCATACTTTAATGTAGCTTCTGCAGAAACTTTGTAAATA
TTGGTATATTTTTCATAAAGGCATTGCCAAAATGATAAATGG

Run BLAST on NCBI

transcript from alignment at scaffold_302:319140..324325-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00057983 ID=TCONS_00057983|Name=TCONS_00057983|organism=Clytia hemisphaerica|type=transcript|length=5186bp|location=Sequence derived from alignment at scaffold_302:319140..324325- (Clytia hemisphaerica)
GGAAAAGCTTTGTTTCGGATGTCTTGAAAAAGGTCATCTTGCTTCAAGTT
GTAAAAATCGAAGAACTTGTCTGGTTTGTAATAAAAAGCATCCAACTATT
ACTCATGGAATGAGATTTCGTCATCCTCCACGTCTACCTCCTAAAGACTC
GAAGAAAGACAGCTCTGAATCTAAAGAACCTGATGTCAGACCTTGTCCTA
AAAAGCCTGAAGTTTCAAATCCACCTGTTAGTTGTATTTTGAATAAGGAT
TCTGAAAAAAAACATTAGTATGTGTGTTGTTCCAGTTATATTACGTCATG
AATTGTCTAAATCTGACATTGTTACATTTGCTGTGCTTGACAATTGTTCA
NTTATTAAGCTTATACTTCAGTACAGCTTATGCAGAAATTTGGGAGAAAT
TGACTCATTTTTCATAAGGTTATGGCCCGTTGCAGGTGTTAGTCGTTTAC
CATTTCCCTTGTTTTGTGCTTGACCGGTGCCCGCCCGACAACTGTGGTTT
TTGTAAAATGGAGTATAGACACATATTCATTCAGAAAAAACCTTTACTAA
GACTCAATCAAGCATACTTTAATGTAACTTCTGCAGAAACTTTGTAAATA
TTGGTATATTTTTCATAAAGGCATTGCCAAAATGATAAATCACTGGAGTT
GGTCGATTTTCTTGCTTAAGCCGGCTGTCTACTGCGCTGTCACTTTGACT
CTTTACTATAATATAATTAAAAACAATTGTGGGTAAAATTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCGGCTGTCTACTGCGCTGTCACTTTGACTCTT
TACTATAATATAATTAAAAACAATTGTGGGTAAAATTGTGCCAATAATAT
ATCCTATATCGTATATTCTTTATCACACATGAAATTAATCTAAAATATAT
ATTTTTTATTATTCAATTTCAGTAGGAATTGTTGGAAAGCCGACAACAAT
GAGCTCTTGGCATGTGTGATAACCCGTCTTGAGCGGCTAATTCAGGGAAA
CATCTCTGGGGACCGGTAGCCTACTCTATTGTGCTTTGTAATAAACTCTT
AGAGAATGACATATTAAAATTTTGACTCAAAAGAAGGTCATCATGAAAAC
TTACCATGAATATTTTTAGACTGACTTTTAACCTAAAAAAAATCTCTTTG
GGATACTTTATTCTGTATGTTAGGGTATAACACTTTATAGAAACATGTTT
CTTCTCATTTATTTAATGTTTTAGAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AACCAATCACTTCACGGGAATTCTCTATTTTCTCTATTTTCCGACAAAAG
AATTCTCTATTTCTCTATTTTGACCAATCATATTGCTCTATTTTGAAATC
CCGCGTTTTGATTGGTTCACGGCAAAATTAGAGAATTCTAGTGATCTGAT
TTGTTTAAAAAATCAAAACAAGATGTCTGCCGAAGTGGATATTAAGCCTT
CACAGCTTCAAGCAGAATTTTTGACTGAAATTTCTTCATTTTCTATGAAA
TATACTACCAAATCAACGATATAAGAACATGAAAAGTATTAAAAATTGTG
ATAGAGTAGTTGGTTTCTCTAATCCCAATTTACTGGGAGTTTTTTTGTTC
TTTTTGCTGTGGAATTTGAATGTTTGATGCAGAACTGATTTCTTGTACTT
GGTTGGTTGGTCACTTTGATTTTACATCATGGACACGATTTTATTCAGAA
GAAAACTCAACTGGATTTCGATTGAGCATACATCATTACAGCTCCTGTAG
AAATTTGAGACAGATTGCTCCATTTTTGAAGGAGTTATGACCCAAAGTGA
TGCACCGCTGGAGACGGCCAATGTTCATGATTGTAGCGGTTATTACTTTG
ATTTTACATTTCTGACACAGACTTATGTAGAAGAAACTTCTTTTGGAATT
TGACTCAGCATACTTCAGTACAGCTCCTGTATAAATTTGAGAAACATTGA
TCAATTTTTCATGAAGTATTAGGCCAAACTGGACTTCAACAATCCTAACC
GNACTTCAGTACAGCTCCTGTATAAATTTGAGAAACATTGATCAATTTTT
CATGAAGTATTAGGCCAAACTGGACTTCAACAATCCTAACACCGTGCTTG
TCCGTGCTTTTGACGGCCGTCACCTTTATTTTACATCATGGATACAGATT
TATTTAGAAGAAACCTTTATTGGAATTAGGTTCAGTATACTCCAATAATA
CAGTTCCTGTAGAAATTTGGAAAATATCGACTAAATTTTCATAAAGTTAT
GGCCTAAAAGAATGAATTGGTACCGTGGAGTATGGCTAGAGTTATCATGC
TTGTTCCGGCGGACATTGTCATTTTGAATTATGTACAAGTAGGTTCTAGA
TCTAGTTTTTATATTTGCATAAGACAAAAAATGCCTAATCTCGCAAATTC
TACGTAAAAATACAAAAATGAAAAGGTTTAATAGCTAAGATAAAGATATA
AAAATATANNNNNNNNNACAAGTAGGAAGAAACCTTTACTGAAACTTTAT
TAAGCTTATACTTCAGTACAGCTTATGCAGAAATTTGGGAGAAATTGACT
CATTTTTCATAAGGTTATGGTCGTTGCAGGTGTTAGCCGTTTACCATTTC
CCTTGTTTTGTGCTTGACCGGTGCCAGCCCGACAACTGTGGTTTTTATAA
AATGGAGTATAGACACATATTCATTCAGAAAAAACCTTTACTAAGACTCA
ATCAAGCATACTTTAATGTAGCTTCTGCAGAAACTTTGTAAATATTGGTA
TATTTTTCATAAAGGCATTGCCAAAATGATAAATGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036543	XLOC_036543	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00057983-exon-scaffold_302-1575043694:323891..324325	TCONS_00057983-exon-scaffold_302-1575043694:323891..324325	Clytia hemisphaerica	exon
TCONS_00057983-exon-scaffold_302-1575043694:319140..319346	TCONS_00057983-exon-scaffold_302-1575043694:319140..319346	Clytia hemisphaerica	exon
TCONS_00057983-exon-scaffold_302-1510915933:323891..324325	TCONS_00057983-exon-scaffold_302-1510915933:323891..324325	Clytia hemisphaerica	exon
TCONS_00057983-exon-scaffold_302-1510915933:319140..319346	TCONS_00057983-exon-scaffold_302-1510915933:319140..319346	Clytia hemisphaerica	exon
TCONS_00057983-exon-scaffold_302-1491911889:323891..324325	TCONS_00057983-exon-scaffold_302-1491911889:323891..324325	Clytia hemisphaerica	exon
TCONS_00057983-exon-scaffold_302-1491911889:319140..319346	TCONS_00057983-exon-scaffold_302-1491911889:319140..319346	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_302	supercontig	scaffold_302:319140..324325 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.20905	2.02231	2.70435	1.43705	37.2456	31.1557	12.4591	15.2372	3.51949	5.72631	2.76216	3.36266	1.159	0.954661	1.29547	1.07389	1.11577	0.0945901	0.147873	0.380315	0.741127	0.62588	0.497186	1.45008	1.58757	1.57509	0.343407	0.45106	0.647305	1.52977

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00057983 vs. Swiss-Prot (Human)

BLAST of TCONS_00057983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00057983 (transcript) - C. hemisphaerica