TCONS_00057982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057982
Unique NameTCONS_00057982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1204

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057982 ID=TCONS_00057982|Name=TCONS_00057982|organism=Clytia hemisphaerica|type=transcript|length=1204bp
TCACAGCTTCAAGCagaatttttgactgaaatttcttcattttctatgAA
ATATACTACCAAATCAACGATATAAGAACATGAAAAGTATTAAAAATTGT
GATAGAGTAGTTGGTTTCTCTAATCCCAATTTACTGGgagtttttttgtt
ctttttgctGTGGAATTTGAATGTTTGATGCAGAACTGATTTCTTGTACT
TGGTTGGTTGGTCACTTTGATTTTACATCATGGACACGATTTTATTCAGA
AGAAAACTCAACTGGATTTCGATTGAGCATACATCATTACAGCTCCTGTA
GAAATTTGAGACAGATTGCTCCATTTTTGAAGGAGTTATGACCCAAAGTG
ATGCACCGCTGGAGACGGCCAATGTTCATGATTGTAGCGGTTATTACTTT
GATTTTACATTTCTGACACAGACTTATGTAGAAGAAACTTCTTTTGGAAT
TTGACTCAGCATACTTCAGTACAGCTCCTGTATAAATTTGAGAAACAttg
atcaatttttcatgaaGTATTAGGCCAAACTGGACTTCAACAATCCTAAC
CGNACTTCAGTACAGCTCCTGTATAAATTTGAGAAACAttgatcaatttt
tcatgaaGTATTAGGCCAAACTGGACTTCAACAATCCTAACACCGTGCTT
GTCCGTGCTTTTGACGGCCGTCACCTTTATTTTACATCATGGATACAGAT
TTATTTAGAAGAAACCTTTATTGGAATTAGGTTCAGTATACTCCAATAAT
ACAGTTCCTgtagaaatttggaaaatatcgACTAAATTTTCATAAAGTTA
TGGCCTAAAAGAATGAATTGGTACCGTGGAGTATGGCTAGAGTTATCATG
CTTGTTCCGGCGGACATTGTCATTTTGAATTATGTACAAGTAGGAAGAAA
CCTTTACTGAAACTTTATTAAGCTTATACTTCAGTACAGCTTATGCAGAA
ATTTGGGAGAAATTGACTCATTTTTCATAAGGTTATGGTCGTTGCAGGTG
TTAGCCGTTTACCATTTCCCTTGTTTTGTGCTTGACCGGTGCCAGCCCGA
CAACTGTGGTTTTTATAAAATGGAGTATAGACACATATTCATTCAGAAAA
AACCTTTACTAAGACTCAATCAAGCATACTTTAATGTAGCTTCTGCAGAA
ACTTTGTAAATATTGGTATATTTTTCATAAAGGCATTGCCAAAATGATAA
ATGG
Run BLAST on NCBI

transcript from alignment at scaffold_302:319140..320476-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057982 ID=TCONS_00057982|Name=TCONS_00057982|organism=Clytia hemisphaerica|type=transcript|length=1337bp|location=Sequence derived from alignment at scaffold_302:319140..320476- (Clytia hemisphaerica)
TCACAGCTTCAAGCAGAATTTTTGACTGAAATTTCTTCATTTTCTATGAA
ATATACTACCAAATCAACGATATAAGAACATGAAAAGTATTAAAAATTGT
GATAGAGTAGTTGGTTTCTCTAATCCCAATTTACTGGGAGTTTTTTTGTT
CTTTTTGCTGTGGAATTTGAATGTTTGATGCAGAACTGATTTCTTGTACT
TGGTTGGTTGGTCACTTTGATTTTACATCATGGACACGATTTTATTCAGA
AGAAAACTCAACTGGATTTCGATTGAGCATACATCATTACAGCTCCTGTA
GAAATTTGAGACAGATTGCTCCATTTTTGAAGGAGTTATGACCCAAAGTG
ATGCACCGCTGGAGACGGCCAATGTTCATGATTGTAGCGGTTATTACTTT
GATTTTACATTTCTGACACAGACTTATGTAGAAGAAACTTCTTTTGGAAT
TTGACTCAGCATACTTCAGTACAGCTCCTGTATAAATTTGAGAAACATTG
ATCAATTTTTCATGAAGTATTAGGCCAAACTGGACTTCAACAATCCTAAC
CGNACTTCAGTACAGCTCCTGTATAAATTTGAGAAACATTGATCAATTTT
TCATGAAGTATTAGGCCAAACTGGACTTCAACAATCCTAACACCGTGCTT
GTCCGTGCTTTTGACGGCCGTCACCTTTATTTTACATCATGGATACAGAT
TTATTTAGAAGAAACCTTTATTGGAATTAGGTTCAGTATACTCCAATAAT
ACAGTTCCTGTAGAAATTTGGAAAATATCGACTAAATTTTCATAAAGTTA
TGGCCTAAAAGAATGAATTGGTACCGTGGAGTATGGCTAGAGTTATCATG
CTTGTTCCGGCGGACATTGTCATTTTGAATTATGTACAAGTAGGTTCTAG
ATCTAGTTTTTATATTTGCATAAGACAAAAAATGCCTAATCTCGCAAATT
CTACGTAAAAATACAAAAATGAAAAGGTTTAATAGCTAAGATAAAGATAT
AAAAATATANNNNNNNNNACAAGTAGGAAGAAACCTTTACTGAAACTTTA
TTAAGCTTATACTTCAGTACAGCTTATGCAGAAATTTGGGAGAAATTGAC
TCATTTTTCATAAGGTTATGGTCGTTGCAGGTGTTAGCCGTTTACCATTT
CCCTTGTTTTGTGCTTGACCGGTGCCAGCCCGACAACTGTGGTTTTTATA
AAATGGAGTATAGACACATATTCATTCAGAAAAAACCTTTACTAAGACTC
AATCAAGCATACTTTAATGTAGCTTCTGCAGAAACTTTGTAAATATTGGT
ATATTTTTCATAAAGGCATTGCCAAAATGATAAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036543XLOC_036543Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057982-exon-scaffold_302-1575043694:319584..320476TCONS_00057982-exon-scaffold_302-1575043694:319584..320476Clytia hemisphaericaexon
TCONS_00057982-exon-scaffold_302-1575043694:319140..319450TCONS_00057982-exon-scaffold_302-1575043694:319140..319450Clytia hemisphaericaexon
TCONS_00057982-exon-scaffold_302-1510915933:319584..320476TCONS_00057982-exon-scaffold_302-1510915933:319584..320476Clytia hemisphaericaexon
TCONS_00057982-exon-scaffold_302-1510915933:319140..319450TCONS_00057982-exon-scaffold_302-1510915933:319140..319450Clytia hemisphaericaexon
TCONS_00057982-exon-scaffold_302-1491911889:319584..320476TCONS_00057982-exon-scaffold_302-1491911889:319584..320476Clytia hemisphaericaexon
TCONS_00057982-exon-scaffold_302-1491911889:319140..319450TCONS_00057982-exon-scaffold_302-1491911889:319140..319450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:319140..320476 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.522212	0.84917	0.405443	0.316598	10.0222	5.66818	4.32778	3.85742	1.11798	2.1948	1.11972	2.34109	0.531202	0.449641	0.292642	0.391677	0.251687	0.393401	0.568713	0.364622	0.826799	0.730729	0.477172	0.440597	0.182943	0.710719	0.487273	0.162297	0.119882	0.286918
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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