TCONS_00057936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057936
Unique NameTCONS_00057936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057936 ID=TCONS_00057936|Name=TCONS_00057936|organism=Clytia hemisphaerica|type=transcript|length=1426bp
aataaaattttcttgagaaagattttttcccacagaaaaatataaaatca
gtTTCTTGGGGCAgtcaaattttcatgaaaagaaATTCTATGTAAAGATA
AAAACAGGAGCGGTATATACAGGAAAATGcatcgttgaaaaaattattgc
acGCATCAATGGAATGAGGTTGTAAGAAGGAAGAGAGAGACACAATTTTG
GTCTACTACCCACTAGAAAATGAACACAGTTTTACTCATCCTTTTTTCAA
TAACAACTGGAGCATCATGGGTATCCACAATGCATCAGGACCGCATCAAT
GCATTGCACGAAGACATGGACGAGGTTGATCCCCATTACTACAAACCACT
ACCATTGCCCTTGAAAGATGCGATAATTTATGTCAAGAAGTATGGTCCGT
ATGCAGCAGAAAAGAGAATTAAAGTGAAACGGAGACATAGCAAGAAATCG
ATCAAACTTATGGAATGCAAACAACGTGACCGACCTCCCAaatGTGAGCG
TCAAGTGAATGGTTGTGGGTCGGGCTTCACTGAATCTGTACCTCTCCTCT
TTCGTGATAAGTTTACATCAAGCTGCAACAAACACGATGTCTGTTATGAT
TGCGGATTTGCGAGAAACTGGACACGATCGGACTGTGATAACACTTTATA
CCAAGACGCTGTGGATGCTTGTGAGTGCGCTTATCCTGGTTTTCTAGCCT
CTGCAGAACGTTTAGCATGCAGAGAAATGGCCGAGTCGATCTATATGGCT
GTTCGTGTATTCAGTGAAAGTTACTTTAGTACACATATCAAGGACTTTTG
TTTGAACGATTGTGTATTGTCATATGGAAGCCCTAAATTGAGCAATATGG
TATGAAGTAAAGGATTATGGGTAAAAGACGTTCTCTATTCGCGATCAAAT
ACATAGTATTTCAATTGACAAATGACTCTATTGACTTTGTATTGAAATTG
TGTTACATTAAGAAGGAATTAATTTcggtaaattttctttttaattttgt
tatCAAACAAATTAGTTCTCAttagaatttaaaaagattCATTCAatctc
accaaaattagttcccttaaccTAAGTACCACGGTCTTTTTTTCtagatc
actcgttgaccaaaaatcgtcaaaaaaaacgatcaaaatctcaaaaaagt
ggatttttggcaaatttttgcatttttttgactttttggcttaaaatctc
gctggaaagactcacttttgatttttttttacttgaccatgaagcacaat
tcaatttctaaagctagaaataattttttctctctGAGGTcctttatttt
aaatatttatgaCCAAATTTGTCAAGTTTCATTTTTCCTTCCACATTCTT
GTGtgaagaaatattttctatatttgtgttttttttatctaaacaTTGGT
TATGAGTACGTCTGCGAGAAGATCGC
Run BLAST on NCBI

transcript from alignment at scaffold_302:378642..383205+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057936 ID=TCONS_00057936|Name=TCONS_00057936|organism=Clytia hemisphaerica|type=transcript|length=4564bp|location=Sequence derived from alignment at scaffold_302:378642..383205+ (Clytia hemisphaerica)
aataaaattttcttgagaaagattttttcccacagaaaaatataaaatca
gtTTCTTGGGGCAgtcaaattttcatgaaaagaaATTCTATGTAAAGATA
AAAACAGGAGCGGTATATACAGGTGATGTCAATATGATATCTAGTTTATT
GATGTTTGATTGACTTAAATATTAGGATATTGCATTATTCAACCAAAGAA
TAGGACTATGCTACAttatttaaatatttcaaaattattcttCAGGAAAA
TGcatcgttgaaaaaattattgcacGCATCAATGGAATGAGGTTGGGTAT
CGTATTTTAAAACAGAGACATACGATTATCAAGTATACTTCATATCAACA
ATAAAACATTTAATCAAGGCAAAAAGGTTGTGTGACTCTTAACTCCAGGA
CTTAATAGTGGTTTTCAAATGTAGCCTCTGCTTTTCATggcttttcaatt
tctttttgaaatttgttgattTAAGCCCTCCCTGGAAACAAACTAACGCA
CATAGTTATGGAGGATTGACCTTTCTTGAACTAACATTGTACTGCAATCG
ACAAAGTATTAAAAACAGTTCAAGATTAACATGGACCACCCCTTATTTGT
AAATGGTGTAAAAATACTAAACTTTAGTGTGTGATTTCTTATGATGATCA
GTTTTCACTCTTATCTCAACGTTTTGCTTCAGTAGGTTGTAAGAAGGAAG
AGAGAGACACAATTTTGGTCTACTACCCACTAGAAAATGGTAATTTTTAT
TTGGGTTTTTTGTTTTAAACCATGCTACATTTGCCTGCTTTTCATTTCCA
TCTTTTCGGTTTCTTAAGCCAAGAAGAGTATACTCTACACAAAGGAAAAT
GAAACGGATTTCTTGCGATCTTCTTTTCTATTTCAGAACACAGTTTTACT
CATCCTTTTTTCAATAACAACTGGAGCATCATGGGTATCCACAATGCATC
AGGACCGCATCAATGCATTGCACGAAGACATGGACGAGGTTGATCCCCAT
TACTACAAACCACTACCATTGCCCTTGAAAGATGCGATAATTTATGTCAA
GAAGTATGGTCCGTATGCAGCAGAAAAGAGAATTAAAGTGAAACGGAGAC
ATAGCAAGAAATCGATCAAACTTATGGAATGCAAACAACGTGACCGACCT
CCCAGTAAGTCAATATACTTCATTTTATGCTAGTATATTTTGGACAGAGA
TAATACTTTGATAGCATAAAAcgcttttatttaaaaaaatattactgAAG
CGGTAGAATTTATTACCCAGGCTATTGCTTAAATCTCAAAACGGAACATT
AGAATTCAGGACCttgtttcattcaaaaacactttcaaaattgatataat
ttaattttctcGTAATTCCTCTCAAAAAACATAATTCAATCAATTTCTGC
TTTTTGGCTTATAAATCGAAATGTTAATTCAATCAAATATCCCCGACTAA
ATACAGGAAGGAAAAAGTCGAAATACAGATATTAAAAAtcttatcggcga
tccaaaaaatatctgcagtCTGATTGGTTGTAAACAGTACgatatatttt
gtattttacatgtacaaaatataaattgacgaaaagatgttgttgcattg
tagtgGGAGCAGTAAtctaaggcgaaaataaaaaaatgtagtgtttctgg
aatgcgggtgaaggaaaaaagctctcatgcgggcCAAACGACAACTATTA
TAAACGATACAAACTATTACTTATTGTCTTAAGGGGGCATGTTGTAAGGC
TATCTGAAAACAGTGAAATTtggacgaacgtactttttgaatgcccCCCC
TCCCCCAATAGTCAATAGTAATATCTAGAACCGTTTTTCTGATTCAAACA
TTTGCAATTAAAGCATTTTTGATGACTTGTGACTAGAGTCTCTAAATTTA
AATAGTGGTTGGTTGGATTCGACTGAATTGACATACTTATGCCTTGGGCA
TACTTGCGCGAACGTTTAATTATTAATTATAGTGAGTGCTATGTTCTTAG
TGTGCACATACTCTCGGGTACCTAATAGCCGTCCCCCCCCCAATATTTTT
GAAAGTTCCCTCTTTTGTCCTAATTCAACTGTATTAGTATCTTTTTCAAA
AATTTTCCACCCAGGACATTTTTATTCCAACCCCCACCCTGCTTATTAAG
TTTTGAGATTTTTCCAACCCCCCCCTCCCCCggctattaggtacccgaga
gtacttgtTACAAACCAACTaatgttttttaaatgatcaatttggtctat
aagatcacaaaaacgagtggtgagaaaaattcGGTCCccatatgacgtca
tcatttgcttaggcttgaaaatgaaagtgaaaattacaAGCTCAAATATG
GCTCAGATGAAAAATATTCATCCAAAGATTAAACAAATATCACAACattt
atctgaaaatgaatacacgtttttttttttttaagaaacacacttttaag
aaacatgaggctcagaatgcctaaaaactaagaaacatctaagaaacatg
ccgaggctgagaatgagaaaataacatttttaaaacggtttttttagaac
cttccaatctttgcgtgaaaaataggctgattatgtcaaaaagtttagaa
acatgtaagaaacatttaaggctcaaaaggccgatttcttaagaaacatt
gaggctgcttggtaaaactagtttcttaaaaaaaaaaaacgtgtatttga
aaAGCAATAACGGAAAATAGCTCAAATAAGGAGTTCAACTTGACGTAATC
GgtaattaaattgaaaatattttgttttatttgaaaGAAGATCATCTAGA
GAACAAAAAATATCTCCAAAATGGATATTCCCTATGACACCgtcattaaa
ttttattttcagaatGTGAGCGTCAAGTGAATGGTTGTGGGTCGGGCTTC
ACTGAATCTGTACCTCTCCTCTTTCGTGATAAGTTTACATCAAGCTGCAA
CAAACACGATGTCTGTTATGATTGCGTAAGTCTGTCTCGAAAATCCGCTC
AAGCTGCTTTCGATTACTTTCGTTTTAATTACATTCACAGTTGGAATCGA
TATCAATTAAATTAGTCTCTTAAGCCTTTGACATGATTTGACCCTATTCG
GATTACTAAAATGGTATTTTTAGTCAAACAATGTTCGTGTCTGAGGCGTA
GTGGTGTCGTTGTCATCGCTCTTAACTCCCGTCTGGGTGGTccgagttcg
attcccactgtagtactacggttcacttggcaagtgaacataacttcgcc
cgggtcaaaccataccatgtgaggggaattgtgTAACACTACTCTGATGC
AAGGGTGTGGGTGATatgccagacattgtggtgtgtaTGGTATCACCACT
ATGCATCATGGTATCTGTGTCTCGCGTGCACAGAACCAGCGGTGTCTAGA
CAGCGCTAAGCGTTCCAACTTGAAAAGGAAGGAATTCCTACTTCGTACGG
AGTAGAACCCATCCCCAGTGGGGAGGGCTCATATTATATCATCAATATTC
GTGTCACAAGAGAGCCCTGTCTCACTCCCTCatctggaaaaaaatattta
cccaTCGGGAACATGAAAAAGATGAATATAAATAGGCTATATAGAAAAGT
CTCTTGCTTTTATGAGCAGTCCCTTGCTTTAATGTTAACCTTTGAAATGT
CAACTATTGTACCTTTAGTTATGATTGTTGGGCTGAAAAATGTTTTACAT
TCTGCCGGACCCTGATGTTCATACTGTTTTATCATGTTCAGGGATTTGCG
AGAAACTGGACACGATCGGACTGTGATAACACTTTATACCAAGACGCTGT
GGATGCTTGTGAGTGCGCTTATCCTGGTTTTCTAGCCTCTGCAGAACGTT
TAGCATGCAGAGAAATGGCCGAGTCGATCTATATGGCTGTTCGTGTATTC
AGTGAAAGTTACTTTAGTACACATATCAAGGACTTTTGTTTGAACGATTG
TGTATTGTCATATGGAAGCCCTAAATTGAGCAATATGGTATGAAGTAAAG
GATTATGGGTAAAAGACGTTCTCTATTCGCGATCAAATACATAGTATTTC
AATTGACAAATGACTCTATTGACTTTGTATTGAAATTGTGTTACATTAAG
AAGGAATTAATTTcggtaaattttctttttaattttgttatCAAACAAAT
TAGTTCTCAttagaatttaaaaagattCATTCAatctcaccaaaattagt
tcccttaaccTAAGTACCACGGTCTTTTTTTCtagatcactcgttgacca
aaaatcgtcaaaaaaaacgatcaaaatctcaaaaaagtggatttttggca
aatttttgcatttttttgactttttggcttaaaatctcgctggaaagact
cacttttgatttttttttacttgaccatgaagcacaattcaatttctaaa
gctagaaataattttttctctctGAGGTcctttattttaaatatttatga
CCAAATTTGTCAAGTTTCATTTTTCCTTCCACATTCTTGTGtgaagaaat
attttctatatttgtgttttttttatctaaacaTTGGTTATGAGTACGTC
TGCGAGAAGATCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036531XLOC_036531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057936-exon-scaffold_302-1491911889:378642..378763TCONS_00057936-exon-scaffold_302-1491911889:378642..378763Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1510915933:378642..378763TCONS_00057936-exon-scaffold_302-1510915933:378642..378763Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1575043694:378642..378763TCONS_00057936-exon-scaffold_302-1575043694:378642..378763Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1491911889:378887..378932TCONS_00057936-exon-scaffold_302-1491911889:378887..378932Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1510915933:378887..378932TCONS_00057936-exon-scaffold_302-1510915933:378887..378932Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1575043694:378887..378932TCONS_00057936-exon-scaffold_302-1575043694:378887..378932Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1491911889:379327..379380TCONS_00057936-exon-scaffold_302-1491911889:379327..379380Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1510915933:379327..379380TCONS_00057936-exon-scaffold_302-1510915933:379327..379380Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1575043694:379327..379380TCONS_00057936-exon-scaffold_302-1575043694:379327..379380Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1491911889:379528..379795TCONS_00057936-exon-scaffold_302-1491911889:379528..379795Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1510915933:379528..379795TCONS_00057936-exon-scaffold_302-1510915933:379528..379795Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1575043694:379528..379795TCONS_00057936-exon-scaffold_302-1575043694:379528..379795Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1491911889:381504..381616TCONS_00057936-exon-scaffold_302-1491911889:381504..381616Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1510915933:381504..381616TCONS_00057936-exon-scaffold_302-1510915933:381504..381616Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1575043694:381504..381616TCONS_00057936-exon-scaffold_302-1575043694:381504..381616Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1491911889:382383..383205TCONS_00057936-exon-scaffold_302-1491911889:382383..383205Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1510915933:382383..383205TCONS_00057936-exon-scaffold_302-1510915933:382383..383205Clytia hemisphaericaexon
TCONS_00057936-exon-scaffold_302-1575043694:382383..383205TCONS_00057936-exon-scaffold_302-1575043694:382383..383205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:378642..383205 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.468344	0	0.496496	0.458882	0	1.33062	3.89628	4.13927	0	0.304247	1.08212	2.8785	0	0	1.03926	0.866118	0.479679	1.74811	0	0	3.01156	1.94354	3.40033	0.723932	1.26935	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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