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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057913 ID=TCONS_00057913|Name=TCONS_00057913|organism=Clytia hemisphaerica|type=transcript|length=2038bpRun BLAST on NCBI transcript from alignment at scaffold_302:71121..76256+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057913 ID=TCONS_00057913|Name=TCONS_00057913|organism=Clytia hemisphaerica|type=transcript|length=5136bp|location=Sequence derived from alignment at scaffold_302:71121..76256+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057913 vs. Swiss-Prot (Human)
Match: ZN888 (Zinc finger protein 888 OS=Homo sapiens GN=ZNF888 PE=3 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.687e-46 Identity = 98/269 (36.43%), Postives = 144/269 (53.53%), Query Frame = 2
Query: 251 EIGTTAVDQTNQFDQNITHMTQTFEPVNLYVCDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKSACRKHYLRHFKDGASYKCGVCEEMFKDEREYKMHLETHDEKQRTGAHRCGFCLRVFKSQEDLNAHVPLHESGLQYTCERCSARF 1057
E G T D++ H + +P Y C++C + F Q+S RH + H EK Y C+ C K F+R S+LE+H + HT E+ + C+VC AF HL +H+++H+ E+PY+C C KTF + L H+ +HTG +PY C CG+ F ++ L RH H+ EKP+ CKECDK F KS +H H + YKC VC++ F+ + H H ++ ++C C +VF++Q L H LH Y CE C F
Sbjct: 169 ECGKTFSDKSALLVHKTIHTGE--KP---YKCNECGKVFNQQSNLARHHRVHTGEKPYQCKECDKVFSRKSYLERHRRIHTGEKPYKCKVCDKAFRHDSHLAQHIVIHTREKPYKCNECGKTFGENSALLVHKTIHTGEKPYKC--NECGKVFNQQSNLARHHRLHTGEKPYKCKECDKVFSRKSHLERHRRIHTGE-KPYKCKVCDKAFRRDSRLAYHHRLHTGEK---PYKCNECGKVFRTQSQLACHHRLHTGEKPYKCEECDKVF 426 HSP 2 Score: 139.428 bits (350), Expect = 4.655e-35 Identity = 74/184 (40.22%), Postives = 103/184 (55.98%), Query Frame = 2
Query: 338 YVCDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKSACRKHYLRHFK---DGASYKCGVCEEMF 880
Y C++C + F Q+S RH + H EK Y C+ C K F+R SHLE+H + HT E+ + C+VC AF L H +H+GE+PY+C C K F ++ L H +HTG +PY CE C + F K+ L H H+ EKP+ C+ CDK F R H +RH + SYKC C ++F
Sbjct: 305 YKCNECGKVFNQQSNLARHHRLHTGEKPYKCKECDKVFSRKSHLERHRRIHTGEKPYKCKVCDKAFRRDSRLAYHHRLHTGEKPYKCNECGKVFRTQSQLACHHRLHTGEKPYKCE--ECDKVFNIKSHLEIHRRVHTGEKPYKCRVCDKAFGKAFTSRSHLIRHQRIHTGQKSYKCHQCGKVF 486 HSP 3 Score: 138.272 bits (347), Expect = 1.036e-34 Identity = 89/276 (32.25%), Postives = 136/276 (49.28%), Query Frame = 2
Query: 155 HTSNEASQPSEMESTVQTET-MEHDSQVIEPRKEIGTTAVDQTNQFDQNITHMTQTFEPVNLYVCDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKSACRKHYLRHFKDGASYKCGVCEEMFKDEREYKMHLETHDEKQRTG--AHRCGFCLRVF 973
HT + Q E + ++ +E ++ K D+ + D ++ Y C++C +TF + S H H EK Y C C K F + S+L +H + HT E+ + C+ C F HL RH +H+GE+PY+C+VC+K F R + L H +HTG +PY C CG+ F ++ L H H+ EKP+ C+ECDK F KS H H + YKC VC++ F + HL H ++ TG +++C C +VF
Sbjct: 215 HTGEKPYQCKECDKVFSRKSYLERHRRIHTGEKPYKCKVCDKAFRHDSHLAQHIVIHTREKPYKCNECGKTFGENSALLVHKTIHTGEKPYKCNECGKVFNQQSNLARHHRLHTGEKPYKCKECDKVFSRKSHLERHRRIHTGEKPYKCKVCDKAFRRDSRLAYHHRLHTGEKPYKCN--ECGKVFRTQSQLACHHRLHTGEKPYKCEECDKVFNIKSHLEIHRRVHTGE-KPYKCRVCDKAFGKAFTSRSHLIRH-QRIHTGQKSYKCHQCGKVF 486 HSP 4 Score: 135.191 bits (339), Expect = 1.233e-33 Identity = 81/223 (36.32%), Postives = 116/223 (52.02%), Query Frame = 2
Query: 389 RHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKSACRKHYLRHFKDGASYKCGVCEEMFKDEREYKMHLETHDEKQRTGAHRCGFCLRVFKSQEDLNAHVPLHESGLQYTCERCSARF 1057
RH + H EK Y C C KTF+ S L H HT E+ + C CG F +L RH VH+GE+PYQC+ C+K F+RK+ L +H+ +HTG +PY C + C + F + L +H++ H+ EKP+ C EC KTF SA H H + YKC C ++F + H H ++ ++C C +VF + L H +H Y C+ C F
Sbjct: 154 RHYRRHTGEKPYKCNECGKTFSDKSALLVHKTIHTGEKPYKCNECGKVFNQQSNLARHHRVHTGEKPYQCKECDKVFSRKSYLERHRRIHTGEKPYKC--KVCDKAFRHDSHLAQHIVIHTREKPYKCNECGKTFGENSALLVHKTIHTGE-KPYKCNECGKVFNQQSNLARHHRLHTGEK---PYKCKECDKVFSRKSHLERHRRIHTGEKPYKCKVCDKAF 370 HSP 5 Score: 119.398 bits (298), Expect = 2.040e-28 Identity = 63/158 (39.87%), Postives = 89/158 (56.33%), Query Frame = 2
Query: 338 YVCDKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTEERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQHQHVHTGLRPYGCE--HENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFRTKS 805
Y C +C++ F +KS ERH + H EK Y C+ C K F R S L H + HT E+ + C CG F L H +H+GE+PY+CE C+K F K+ L H+ VHTG +PY C + G+ FT ++ L RH H+ +K + C +C K F +S
Sbjct: 333 YKCKECDKVFSRKSHLERHRRIHTGEKPYKCKVCDKAFRRDSRLAYHHRLHTGEKPYKCNECGKVFRTQSQLACHHRLHTGEKPYKCEECDKVFNIKSHLEIHRRVHTGEKPYKCRVCDKAFGKAFTSRSHLIRHQRIHTGQKSYKCHQCGKVFSLRS 490 The following BLAST results are available for this feature:
BLAST of TCONS_00057913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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