TCONS_00057898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057898
Unique NameTCONS_00057898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length999

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057898 ID=TCONS_00057898|Name=TCONS_00057898|organism=Clytia hemisphaerica|type=transcript|length=999bp
aagaaagttaaaaaaaaaaacaacgaaacaaaataaaaaatatgtcaTCA
TGGTTACCTATACCGTTCCGCGTTGTCATACTGGGCGGAGGATTATCTGG
TCTGGCGGCCGCCCACACTGTTCTCAAACATGCTCAAGTACCGACGCAAG
TGACCGTTATTGAGTCACAAAATCGGTTTGGAGGCTGGTTAGAAAGCACA
AGATTCAATGATGGTACAGTATTTGAACATGGGCCAAGAAGTGGACGTTC
TTATGGGAATGTGGCTTTGGATGCTCTGTCTCTGCTCTCGGATATCGGCA
TTGACGACAAATTTATCGGTGTACCGAAAAGTAACGACGCCGCTTCACGA
AGATATATCTATTACAATGGACAAATCTTAGAATTACCCAGAGGACTGGC
ACTAGCTAAAAAGTGGGGTCCACTCCCTAAGTCTTTACTCGGTTTGATGA
TACGTGAACCTTTTGTGAAGAAATCTGATTTGGATGATATGTCGGTCCAT
GAATTCTTTAGAAGAAGATTCAACTGCGAAGAGATCGCCGACTATCTTGC
CGACCCATTATGTCACGGTATTTTCGGATGGGACTCTAAACAGTTGAGTT
TGCGATCATGCTTTCCAATGCTGTTTGATTACGAGAAAAATTATGGATCG
GTCGTTAAAGGTGCTCTTTTGTCCAAGGGTAACAAGCCACCAATTAGTTC
ATTGTCAAATAAAGCCAAAGAACAACAATGGATGGCATGGTCGGTCAAAG
GAGGCATGCAAACGTTGCCAGAATTATGGTCACAACATTTGATTGAGAAA
GGCCTGCAATGTCATCTTAATACAGAGTGCAAGAAACTAAAGGTTGAATT
CACTACGGATAGTCGTAAATTTCATATCGAGACAAACAATGGAACATTCG
AGGCTGACNCGAATTTCTTTGGATGGCTTTTCCAtgcttctttcaacttt
tctttgaaGCCTTTTATGGAAACAGCAGCTACCACCTCAGACGGCAATT
Run BLAST on NCBI

protein sequence of TCONS_00057898-protein

>TCONS_00057898-protein ID=TCONS_00057898-protein|Name=TCONS_00057898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MSSWLPIPFRVVILGGGLSGLAAAHTVLKHAQVPTQVTVIESQNRFGGWL
ESTRFNDGTVFEHGPRSGRSYGNVALDALSLLSDIGIDDKFIGVPKSNDA
ASRRYIYYNGQILELPRGLALAKKWGPLPKSLLGLMIREPFVKKSDLDDM
SVHEFFRRRFNCEEIADYLADPLCHGIFGWDSKQLSLRSCFPMLFDYEKN
YGSVVKGALLSKGNKPPISSLSNKAKEQQWMAWSVKGGMQTLPELWSQHL
IEKGLQCHLNTECKKLKVEFTTDSRKFHIETNNGTFEADXNFFGWLFHAS
FNFSLKPFMETAATTSDGN
Run BLAST on NCBI

transcript from alignment at scaffold_301:88241..93005+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057898 ID=TCONS_00057898|Name=TCONS_00057898|organism=Clytia hemisphaerica|type=transcript|length=4765bp|location=Sequence derived from alignment at scaffold_301:88241..93005+ (Clytia hemisphaerica)
aagaaagttaaaaaaaaaaacaacgaaacaaaataaaaaatatgtcaTCA
TGGTTACCTATACCGTTCCGCGTTGTCATACTGGGCGGAGGATTATCTGG
TCTGGCGGCCGCCCACACTGTTCTCAAACATGCTCAAGTACCGACGCAAG
TGACCGTTATTGAGTCACAAAATCGGTTTGGAGGCTGGTTAGAAAGCACA
AGATTCAATGATGGTACAGTATTTGAACATGGGCCAAGAAGTGGACGTTC
TTATGGGAATGTGGCTTTGGATGCTCTGTCTCTGGTGAGTTTTACCACAA
TTTTCTGATCCTGTTAGCCTAATCTCCGAGCTATGTTATGAGGTTGCAGT
TAtcaacaaaaatacaaaattcaaTATACAAACAAGTATACTAAATAGGT
TTTAatatagacgatgctatcgttcgtttagagggtcagtaaacgcgaGA
AAATATATGCGCAGagtcagggcgtcagggcggtatagttttggaacact
gtaaacacctccgcccCGAACTAaactcgttttcaaatttatcccgcttC
CTAAAATTCCCTTTTTCAATGATAGACGGTAGGATCGTCTAGTTTTAATa
tagataaataaataaataaatatttcattcaAATGTCTAAATCATTAGAG
ATAAGGCAAAGCCAACTGTGTCATCATCAACAGTTTTAATATCACCTCGG
AAACCTATCGTTTGGCAAGTTAAAACATGCTGAGGGGTTTGTATTTCGCC
ACACATACAGTTGGGATTATTGCTCAGACCTATCCGATGCATAAAACTAC
catatcaaaattcaataaGTTGTATCGAAGGAGTCATTATTATGAAGTTT
CCATATCTTGAACATTGTATAGGGAAAGCTCATCTTTCGTGTAGCGTTTT
GTTGTGTTTACTTTCATTTTGTTctcgttttgtttttttatacaaTTTAT
TTTAAGTCTTTTCCATATTTTCAGCTCTCGGATATCGGCATTGACGACAA
ATTTATCGGTGTACCGAAAAGTAACGACGCCGCTTCACGAAGATATATCT
ATTACAATGGACAAATCTTAGAATTACCCAGAGGACTGGCACTAGCTAAA
AAGTGGGGTCCACTCCCTAAGTCTTTACTCGGTTTGATGATACGTGAACC
TTTTGTGAAGAAATCTGATTTGGATGATATGTCGGTCCATGAATTCTTTA
GAAGAAGATTCAACTGCGAAGAGGTTTGTAGTTCCAAAAGGATAAATATT
TCATTGGGGCCccatttcatatttttgaaaatttactttATCCCCCCCCC
TGATAGAAAAAGTATCAGGTATAAAAAATTTCACTAGAGTCCAGAGGTAC
CTGGGCAGAAAAGGGGCACTTGGGGCACAGCGGTACTTAGTTGTACCAGT
GGTACTTAGTTGTTGTACCAGTGGTACTTATAGTTGTACCACTGTTGGGG
GGGGGGTAAGTGTAACTTTTAATGTTCATTTTTCAATCTAAGTGGTATAA
ACACTCATGTTATTCCCCAGCCCTCTTAGAACTCAAAAGAAATAATATGA
TACTTTGTATTCCTTACAGATCGCCGACTATCTTGCCGACCCATTATGTC
ACGGTATTTTCGGATGGGACTCTAAACAGTTGAGTTTGCGATCATGCTTT
CCAATGCTGTTTGATTACGAGAAAAATTATGGATCGGTCGTTAAAGGTGC
TCTTTTGTCCAAGGGTAAGTTTTCATTTATTCATAATATTCATGAGGTAA
TGTTCTCTACGGAAAAACCTCGCGTTTTAGCCAGTaatggcaaatttaaa
ctaggcaaaagttgtataaaatttgccattactggctaaaaccggggtct
ttccgtagaaaatattacgtcatcAATATCATGAATTTGAAGCATCAAGC
GTGGTAGAAAATATGTACGGTTAGgtcaaggatttattatagagactctg
gataaacattttactttttattaatttcattttaaaaaagttctctagct
ctttctttttgtacctTTGCAGGGAAAAAGTTTGATAGTACGGCTAGAAT
TGCTGATTGCATTTGTGAAATCTGGCGTGAGAGAAATATCCTTAGACAAG
AAAAATCCGAATGCTTATAGAgtaacgaaattttcaattgggaatatctt
tccaaaactgtTGCCAGAAGAGCTAAAAGTAACATACTTTAGACTTGGGT
GTCTTAGCTCCACTGTGATGTGAAAATCTTTCGGAGGCACGTGCTGGCAA
AGTGGTTTTTTAAGGTTGAAGATTAAAACTTTCCGGTTTCAACATttaat
ttcttatacataacaCGTCTTTTGTATCTTTCTCACAAATTAAAACGCCA
TAACGACATATAATTGGCAATTAGatagaatctgactctcacaggaaagt
ctCCTTTGGGagttggatgagtgattttcgataaaatatgcaattaaaat
gtttcgaaaaatcatttaatgagggaaggagagtgaacaattaTATCATT
ACTGTGGATATAGCTAGAACttgagaaatcagcaaaaatcaggtACTTGT
ATCATGAAATGTCATGAAGGTAATACAGATATATTTCTTATTACCTCTAT
GCTTATCCAGTATATAATAATTCCTTGGTTAGGTCACGACTTGGTGTTTG
TTGAGAAAGAATCGTTCCCTTTAAGACAATAGGGACCTTTAGCATCTAGG
ACGGCAGATTTATAGATTGTGCGCATATCTGGATGAGTTTTTGATTTAAC
AAAATATCCGAAAGATACTTGCAGTGTAATAAAAAccttaatcgcacgat
gggttattttttcttatttggcacgccctcaaagagagcaattaatcgtt
gattgcatcctgtagagagtaattaatcgttaatcacactcttcaatgct
gcgccaatgtttacaaaaatgattttaatgttttttcttacatttctaat
gcatcgaacgttttaacNTTTGGATATTTAGTGCCGTCTAAAGAAAAACT
GGATATTTTAGGAGTGACTTTCGATTCGCATATCTTTCCAGAGCATGCGT
TAGAAAATAGTTCAACTGTGACGGTCATGGCTGGTGGGCCTCGTTTCCAT
GAACTTTTTGGTGAAAAGGCAGACGAAAATACGGCGACGGAAATAGCCGT
TCGTTCTGTTCGCGATACgttgaatttcaaaagtgaGCCAATCAAAAATG
TGACAAAAATGCATCGACACTGTATACCGCAATACCATGTCGGTCATTac
aaaacagctgaaaatatccAGAACTATTTATTGGAACANtgaattttcct
cgtcctttcggactcggaaaattaataacaaaaaaatcactcgtgcaatt
atattcgaattgcactcgttatcatgtgattacatatactaatgaTACTA
TTTGacacaaaatccaaaaaattatctaagcaacattttttttttgcttc
tcaattttgaattttaattcttcGTTAAAgtcaaacttattttttttcat
ttgacagGTAACAAGCCACCAATTAGTTCATTGTCAAATAAAGCCAAAGA
ACAACAATGGATGGCATGGTCGGTCAAAGGAGGCATGCAAACGTTGCCAG
AATTATGGTCACAACATTTGATTGAGAAAGGCCTGCAATGTCATCTTAAT
ACAGAGTGCAAGAAACTAAAGATTCAATTCACTACGGATAGTCGTAAAAT
TCATATCGAGACAAACAATGGAACATTCGAGGCTGATCACGTGATCTCTA
CGCTTTCGGCTCCCGTACTTTTAGACATGATCGAAGATCAAACATTACGT
CACCTGCTACAAGATATTCGGTATACTAATATGGCGGTCATGACTTTACA
ATATAGCGGAGAAAAAATTCCGCATAGTGGGTTTGGATATTTAGTGCCGT
CTAAAGAAAAACTGGATATTTTAGGAGTGACTTTCGATTCGCATATCTTT
CCAGAGCATGCGTTAGAAAATAGTTCAACTGTGACGGTCATGGCTGGTGG
GCCTCGTTTCCATGAACTTTTTGGTGAAAAGGCAGACGAAAATACGGCGA
CGGAAATAGCCGTTCGTTCTGTTCGCGATACgttgaatttcaaaagtgaG
CCAATCAAAAATGTGACAAAAATGCATCGTAACTGTATACCGCAATACCA
TGTCGGTCATTacaaaacagctgaaaatatccGGAACTATTTATTGGAAC
AAAACTTACCGCTAAGCATCATGGGTAACATGTGGGGAGGTCCGGGCGTG
AATGACGTCATCGTGAATGCAAGAAATAACACGATGACGTGGTTGACCAA
TAATCATCTTTGCTGAAAATTTATTTGTAgggatttaattttaatttacg
cTGAATCTTTTGCCTTTTTTGTGTCTACATATGTTCgaatattttaaaga
ttttctttttacataagtggttccgttttatatcagacacatatttcata
tcaggacagtgtcttgctaattgttatattatgctgatatattattatta
ttattattattaaaaNGAGGCATGCAAACGTTGCCAGAATTATGGTCACA
ACATTTGATTGAGAAAGGCCTGCAATGTCATCTTAATACAGAGTGCAAGA
AACTAAAGGTTGAATTCACTACGGATAGTCGTAAATTTCATATCGAGACA
AACAATGGAACATTCGAGGCTGACNCGAATTTCTTTGGATGGCTTTTCCA
tgcttctttcaacttttctttgaaGCCTTTTATGGAAACAGCAGCTACCA
CCTCAGACGGCAATT

Coding sequence (CDS) from alignment at scaffold_301:88241..93005+

>TCONS_00057898 ID=TCONS_00057898|Name=TCONS_00057898|organism=Clytia hemisphaerica|type=CDS|length=4785bp|location=Sequence derived from alignment at scaffold_301:88241..93005+ (Clytia hemisphaerica)
atgtcaTCATGGTTACCTATACCGTTCCGCGTTGTCATACTGGGCGGAGG
ATTATCTGGTCTGGCGGCCGCCCACACTGTTCTCAAACATGCTCAAGTAC
CGACGCAAGTGACCGTTATTGAGTCACAAAATCGGTTTGGAGGCTGGTTA
GAAAGCACAAGATTCAATGATGGTACAGTATTTGAACATGGGCCAAGAAG
TGGACGTTCTTATGGGAATGTGGCTTTGGATGCTCTGTCTCTGCTCTCGG
ATATCGGCATTGACGACAAATTTATCGGTGTACCGAAAAGTAACGACGCC
GCTTCACGAAGATATATCTATTACAATGGACAAATCTTAGAATTACCCAG
AGGACTGGCACTAGCTAAAAAGTGGGGTCCACTCCCTAAGTCTTTACTCG
GTTTGATGATACGTGAACCTTTTGTGAAGAAATCTGATTTGGATGATATG
TCGGTCCATGAATTCTTTAGAAGAAGATTCAACTGCGAAGAGATCGCCGA
CTATCTTGCCGACCCATTATGTCACGGTATTTTCGGATGGGACTCTAAAC
AGTTGAGTTTGCGATCATGCTTTCCAATGCTGTTTGATTACGAGAAAAAT
TATGGATCGGTCGTTAAAGGTGCTCTTTTGTCCAAGGGTAACAAGCCACC
AATTAGTTCATTGTCAAATAAAGCCAAAGAACAACAATGGATGGCATGGT
CGGTCAAAGGAGGCATGCAAACGTTGCCAGAATTATGGTCACAACATTTG
ATTGAGAAAGGCCTGCAATGTCATCTTAATACAGAGTGCAAGAAACTAAA
GGTTGAATTCACTACGGATAGTCGTAAATTTCATATCGAGACAAACAATG
GAACATTCGAGGCTGACNCGAATTTCTTTGGATGGCTTTTCCAtgcttct
ttcaacttttctttgaaGCCTTTTATGGAAACAGCAGCTACCACCTCAGA
CGGCAATatgtcaTCATGGTTACCTATACCGTTCCGCGTTGTCATACTGG
GCGGAGGATTATCTGGTCTGGCGGCCGCCCACACTGTTCTCAAACATGCT
CAAGTACCGACGCAAGTGACCGTTATTGAGTCACAAAATCGGTTTGGAGG
CTGGTTAGAAAGCACAAGATTCAATGATGGTACAGTATTTGAACATGGGC
CAAGAAGTGGACGTTCTTATGGGAATGTGGCTTTGGATGCTCTGTCTCTG
CTCTCGGATATCGGCATTGACGACAAATTTATCGGTGTACCGAAAAGTAA
CGACGCCGCTTCACGAAGATATATCTATTACAATGGACAAATCTTAGAAT
TACCCAGAGGACTGGCACTAGCTAAAAAGTGGGGTCCACTCCCTAAGTCT
TTACTCGGTTTGATGATACGTGAACCTTTTGTGAAGAAATCTGATTTGGA
TGATATGTCGGTCCATGAATTCTTTAGAAGAAGATTCAACTGCGAAGAGA
TCGCCGACTATCTTGCCGACCCATTATGTCACGGTATTTTCGGATGGGAC
TCTAAACAGTTGAGTTTGCGATCATGCTTTCCAATGCTGTTTGATTACGA
GAAAAATTATGGATCGGTCGTTAAAGGTGCTCTTTTGTCCAAGGGTAACA
AGCCACCAATTAGTTCATTGTCAAATAAAGCCAAAGAACAACAATGGATG
GCATGGTCGGTCAAAGGAGGCATGCAAACGTTGCCAGAATTATGGTCACA
ACATTTGATTGAGAAAGGCCTGCAATGTCATCTTAATACAGAGTGCAAGA
AACTAAAGGTTGAATTCACTACGGATAGTCGTAAATTTCATATCGAGACA
AACAATGGAACATTCGAGGCTGACNCGAATTTCTTTGGATGGCTTTTCCA
tgcttctttcaacttttctttgaaGCCTTTTATGGAAACAGCAGCTACCA
CCTCAGACGGCAATatgtcaTCATGGTTACCTATACCGTTCCGCGTTGTC
ATACTGGGCGGAGGATTATCTGGTCTGGCGGCCGCCCACACTGTTCTCAA
ACATGCTCAAGTACCGACGCAAGTGACCGTTATTGAGTCACAAAATCGGT
TTGGAGGCTGGTTAGAAAGCACAAGATTCAATGATGGTACAGTATTTGAA
CATGGGCCAAGAAGTGGACGTTCTTATGGGAATGTGGCTTTGGATGCTCT
GTCTCTGCTCTCGGATATCGGCATTGACGACAAATTTATCGGTGTACCGA
AAAGTAACGACGCCGCTTCACGAAGATATATCTATTACAATGGACAAATC
TTAGAATTACCCAGAGGACTGGCACTAGCTAAAAAGTGGGGTCCACTCCC
TAAGTCTTTACTCGGTTTGATGATACGTGAACCTTTTGTGAAGAAATCTG
ATTTGGATGATATGTCGGTCCATGAATTCTTTAGAAGAAGATTCAACTGC
GAAGAGATCGCCGACTATCTTGCCGACCCATTATGTCACGGTATTTTCGG
ATGGGACTCTAAACAGTTGAGTTTGCGATCATGCTTTCCAATGCTGTTTG
ATTACGAGAAAAATTATGGATCGGTCGTTAAAGGTGCTCTTTTGTCCAAG
GGTAACAAGCCACCAATTAGTTCATTGTCAAATAAAGCCAAAGAACAACA
ATGGATGGCATGGTCGGTCAAAGGAGGCATGCAAACGTTGCCAGAATTAT
GGTCACAACATTTGATTGAGAAAGGCCTGCAATGTCATCTTAATACAGAG
TGCAAGAAACTAAAGGTTGAATTCACTACGGATAGTCGTAAATTTCATAT
CGAGACAAACAATGGAACATTCGAGGCTGACNCGAATTTCTTTGGATGGC
TTTTCCAtgcttctttcaacttttctttgaaGCCTTTTATGGAAACAGCA
GCTACCACCTCAGACGGCAATatgtcaTCATGGTTACCTATACCGTTCCG
CGTTGTCATACTGGGCGGAGGATTATCTGGTCTGGCGGCCGCCCACACTG
TTCTCAAACATGCTCAAGTACCGACGCAAGTGACCGTTATTGAGTCACAA
AATCGGTTTGGAGGCTGGTTAGAAAGCACAAGATTCAATGATGGTACAGT
ATTTGAACATGGGCCAAGAAGTGGACGTTCTTATGGGAATGTGGCTTTGG
ATGCTCTGTCTCTGCTCTCGGATATCGGCATTGACGACAAATTTATCGGT
GTACCGAAAAGTAACGACGCCGCTTCACGAAGATATATCTATTACAATGG
ACAAATCTTAGAATTACCCAGAGGACTGGCACTAGCTAAAAAGTGGGGTC
CACTCCCTAAGTCTTTACTCGGTTTGATGATACGTGAACCTTTTGTGAAG
AAATCTGATTTGGATGATATGTCGGTCCATGAATTCTTTAGAAGAAGATT
CAACTGCGAAGAGATCGCCGACTATCTTGCCGACCCATTATGTCACGGTA
TTTTCGGATGGGACTCTAAACAGTTGAGTTTGCGATCATGCTTTCCAATG
CTGTTTGATTACGAGAAAAATTATGGATCGGTCGTTAAAGGTGCTCTTTT
GTCCAAGGGTAACAAGCCACCAATTAGTTCATTGTCAAATAAAGCCAAAG
AACAACAATGGATGGCATGGTCGGTCAAAGGAGGCATGCAAACGTTGCCA
GAATTATGGTCACAACATTTGATTGAGAAAGGCCTGCAATGTCATCTTAA
TACAGAGTGCAAGAAACTAAAGGTTGAATTCACTACGGATAGTCGTAAAT
TTCATATCGAGACAAACAATGGAACATTCGAGGCTGACNCGAATTTCTTT
GGATGGCTTTTCCAtgcttctttcaacttttctttgaaGCCTTTTATGGA
AACAGCAGCTACCACCTCAGACGGCAATatgtcaTCATGGTTACCTATAC
CGTTCCGCGTTGTCATACTGGGCGGAGGATTATCTGGTCTGGCGGCCGCC
CACACTGTTCTCAAACATGCTCAAGTACCGACGCAAGTGACCGTTATTGA
GTCACAAAATCGGTTTGGAGGCTGGTTAGAAAGCACAAGATTCAATGATG
GTACAGTATTTGAACATGGGCCAAGAAGTGGACGTTCTTATGGGAATGTG
GCTTTGGATGCTCTGTCTCTGCTCTCGGATATCGGCATTGACGACAAATT
TATCGGTGTACCGAAAAGTAACGACGCCGCTTCACGAAGATATATCTATT
ACAATGGACAAATCTTAGAATTACCCAGAGGACTGGCACTAGCTAAAAAG
TGGGGTCCACTCCCTAAGTCTTTACTCGGTTTGATGATACGTGAACCTTT
TGTGAAGAAATCTGATTTGGATGATATGTCGGTCCATGAATTCTTTAGAA
GAAGATTCAACTGCGAAGAGATCGCCGACTATCTTGCCGACCCATTATGT
CACGGTATTTTCGGATGGGACTCTAAACAGTTGAGTTTGCGATCATGCTT
TCCAATGCTGTTTGATTACGAGAAAAATTATGGATCGGTCGTTAAAGGTG
CTCTTTTGTCCAAGGGTAACAAGCCACCAATTAGTTCATTGTCAAATAAA
GCCAAAGAACAACAATGGATGGCATGGTCGGTCAAAGGAGGCATGCAAAC
GTTGCCAGAATTATGGTCACAACATTTGATTGAGAAAGGCCTGCAATGTC
ATCTTAATACAGAGTGCAAGAAACTAAAGGTTGAATTCACTACGGATAGT
CGTAAATTTCATATCGAGACAAACAATGGAACATTCGAGGCTGACNCGAA
TTTCTTTGGATGGCTTTTCCAtgcttctttcaacttttctttgaaGCCTT
TTATGGAAACAGCAGCTACCACCTCAGACGGCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036506XLOC_036506Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057898-exon-scaffold_301-1491911889:88241..88524TCONS_00057898-exon-scaffold_301-1491911889:88241..88524Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1510915933:88241..88524TCONS_00057898-exon-scaffold_301-1510915933:88241..88524Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1575043694:88241..88524TCONS_00057898-exon-scaffold_301-1575043694:88241..88524Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1491911889:89215..89463TCONS_00057898-exon-scaffold_301-1491911889:89215..89463Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1510915933:89215..89463TCONS_00057898-exon-scaffold_301-1510915933:89215..89463Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1575043694:89215..89463TCONS_00057898-exon-scaffold_301-1575043694:89215..89463Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1491911889:89810..89954TCONS_00057898-exon-scaffold_301-1491911889:89810..89954Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1510915933:89810..89954TCONS_00057898-exon-scaffold_301-1510915933:89810..89954Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1575043694:89810..89954TCONS_00057898-exon-scaffold_301-1575043694:89810..89954Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1491911889:91748..91822TCONS_00057898-exon-scaffold_301-1491911889:91748..91822Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1510915933:91748..91822TCONS_00057898-exon-scaffold_301-1510915933:91748..91822Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1575043694:91748..91822TCONS_00057898-exon-scaffold_301-1575043694:91748..91822Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1491911889:92760..93005TCONS_00057898-exon-scaffold_301-1491911889:92760..93005Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1510915933:92760..93005TCONS_00057898-exon-scaffold_301-1510915933:92760..93005Clytia hemisphaericaexon
TCONS_00057898-exon-scaffold_301-1575043694:92760..93005TCONS_00057898-exon-scaffold_301-1575043694:92760..93005Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057898-proteinTCONS_00057898-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_301supercontigscaffold_301:88241..93005 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.90925	6.19975	1.96989	2.6714	0.0349611	0.382408	0	0	1.48836	2.23742	1.02401	0.0433025	1.43436	2.71276	4.17996	3.98258	4.99782	4.92545	0.822721	2.09961	2.23989	2.21643	2.50657	3.47185	0.270622	0	0.000557424	0	3.35871	4.47589
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004572Protoporphyrinogen_oxidase
IPR002937Amino_oxidase
IPR023753FAD/NAD-binding_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006779porphyrin-containing compound biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004729oxygen-dependent protoporphyrinogen oxidase activity
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006779 porphyrin-containing compound biosynthetic process
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity
Blast
[Close]
BLAST of TCONS_00057898 vs. Swiss-Prot (Human)
Match: PPOX (Protoporphyrinogen oxidase OS=Homo sapiens GN=PPOX PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.058e-43
Identity = 89/264 (33.71%), Postives = 139/264 (52.65%), Query Frame = 3 
Query:  123 LKHAQVPTQVTVIESQNRFGGWLESTRFNDGTVFEHGPRSGRSYGNVALDALSLLSDIGIDDKFIGVPKSNDAASRRYIYYNGQILELPRGL-ALAKKWGPLPKSLLGLMIREPFVKKSDLDDMSVHEFFRRRFNCEEIADYLADPLCHGIFGWDSKQLSLRSCFPMLFDYEKNYGSVVKGALLSKGNKP-PISSLSNKAKEQQWMAWSVKGGMQTLPELWSQHLIEKGLQCHLNTECKKLKVEFTTDSRKFHIETNNGTFEAD 908
            L  A  P +V ++ES  R GGW+ S R  +G +FE GPR  R  G +    L L+S++G+D + + V   + AA  R++Y  G +  LP GL  L +   P  K L    +RE    +    D +VH F +RR    E+A    D LC G+F  +S++LS+RSCFP LF  E+ + S++ G LL  G  P P S+L  +A  ++W  WS++GG++ LP+    HL  +G+          L ++      ++ +   + + EAD
Sbjct:   21 LSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLG-PEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEG---RWKVSLRDSSLEAD 280
The following BLAST results are available for this feature:
BLAST of TCONS_00057898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPOX4.058e-4333.71Protoporphyrinogen oxidase OS=Homo sapiens GN=PPOX... [more]
back to top