TCONS_00057872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057872
Unique NameTCONS_00057872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1027

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057872 ID=TCONS_00057872|Name=TCONS_00057872|organism=Clytia hemisphaerica|type=transcript|length=1027bp
tagaTTTTCCAATTGAAATACACAGTCAATTCTTTCTAATTCTAACCATC
GTCAATGGTGTTTTCAGTAGGTACTCTGTGTCccggggtacttaggcaaa
tggaagGCGCTGCCTCAGGAATTGGTCAAGGCACTGCTTACATGTTTGCA
AAATCTGGTGCTCGACTCGTTGTCACAGACCGCGATGAAACCAATTTGAA
GGAAACTGCCAAGAAATGTGAAGAGATGAGCAAACAAAAACCATTGGCAA
TCGTCGGTGATTTAACAGTTCAAAGTGACCTTGAGAATCTAATCAACAAA
ACAATGGAGACTTTCAAACAACTTGATGTTTTGATCAATAATGCAGGAGA
TTCGATCATGGGAACTTGTCTACAAACATCGACTGaagattttgataaaa
tgatGAATATTAATATCCGATCCGTTTTTCAACTAACAAAGATGGCGATA
CCACACTTGAAGAAAACTAAAGGAAATGTTATCAACGTGTCAACCCTCGG
CAGTTCACGCCCTCAAATTGGCTTTAGCGCTTATTGCATGAGCAAAGCAG
CATTAGATCAGTTCACAAGAGCTGCAGCCATCGAATTAGGAGCTGATCAA
GTTCGTGTCAATTGTGTCAACCCAAGCATCATTGCCACTGATAAATGCTC
AAACAGCTCAGATCCTAGTGTCAAAGCTGCAATGGAGAGGAGTAAAATGA
CACACGCCCTTGGCCGTGCTGGTACAGTTGACGAAGTAGCCCAAGCCATC
TTGTTTCTAGCGTCAGGAGCTGCTTCATACATCACAGGAGCATCGATTCC
TATTGACGGGGGTCGATCAACTATGATTCCAGTCTAACATAATTGCCTTA
TGATGTAAATACGACGAGGACATTAAATCTGAATAAATATCTGTTTCAGT
TCAAATAATCTTTGTTCAATTCAATTCCCACCAACAATATACAGCTTTAA
ACAACATAGTTTGTCTTTTTCGAGGAAGCTTTTAAATTTTGCTACACACA
ATATCAGCTATTAGATGTAGATAAACC
Run BLAST on NCBI

transcript from alignment at scaffold_30:33474..37139-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057872 ID=TCONS_00057872|Name=TCONS_00057872|organism=Clytia hemisphaerica|type=transcript|length=3666bp|location=Sequence derived from alignment at scaffold_30:33474..37139- (Clytia hemisphaerica)
TAGATTTTCCAATTGAAATACACAGTCAATTCTTTCTAATTCTAACCATC
GTCAATGGTGTTTTCAGTAGGTACTCTGTGTCCCGGGGTACTTAGGCAAA
TGGAAGGTATGTACCTTTTTTGGATTTCCAAAGTCCCGCTAAGGGTTGGA
GAAATAACAAAATTTCAACTTTTCACCCCCAGAAATATCGAAATTTGGTC
AGCATTGGTCAAATTTGTCCCGGTAAGGGTCGTAAAATTCACAAAATTTT
CCTTTATTTTCTCATTTTTAGTCCCGGTAAGGGTCCGAGGTTCAAAAGTC
GGGCGGCACCTCCCTGTCAGCTCTCAAGCCTAGTACCTCCCTGAGCTCTG
TGTTTTCGAAACGTACACATTTTTTTTGAGGTTAGCCTTTTTCATTATTT
TAGGCACCTGAGCTTCGAATTGCTCTTACCCACTGAATACTTTAGGGCAA
CATTTTAGAAAATTGAGGCTTTATAACACATAAACAATTTGAACCTTGAA
TTGCTTGAATGAGTAGCACACGCTTGCGCAACAGCTGTTTTTTATGAAAT
CTTGGTTTATGAAAGTCTGTTTGACATTTAATTTATTCTTTCAAAATTAG
GCGCTGCCTCAGGAATTGGTCAAGGCACTGCTTACATGTTTGCAAAATCT
GGTGCTCGACTCGTTGTCACAGACCGCGATGAAACCAATTTGAAGGAAAC
TGCCAAGAAATGTGAAGAGATGAGCAAACAAAAACCATTGGCAATCGTCG
GTGATTTAACAGTTCAAAGTGACCTTGAGAATCTAATCAACAAAACAATG
GAGACTTTCAAACAACTTGATGTTTTGATCAATAATGCAGGAGATTCGAT
CATGGGAACTTGTCTACAAACATCGACTGAAGATTTTGATAAAATGATGA
ATATTAATATCCGATCCGTTTTTCAACTAACAAAGATGGCGATACCACAC
TTGAAGAAAACTAAAGGTAAATTGTATTTGATCACTTTAATGCGATATTT
TCTATCAACTTGTGATCAATCTGATTGTCAAAATGAATTTGAACTTGCGA
CGGCACAAGGAATAGGCTTTTCCAGAAAAAAAACGTATACCCCCTGTTGA
GGAGGTCCATCATGTTGTGGCTGGAAATGCTGTAACCCCCTGAAATTCCA
GGCAATTTTAGGTTTCAACCCCTCTGGAATTCTGAATTTTAGTAGGATTT
AAAAGGCTACCCCCATGGAATTCCAGTTATTTTTGACAGATTTTTGTATC
TCCCTATGGAACTCCACCACATATCAAACCTTACCCCCTTGCAACGGAAA
TGGACCTCCTCAACAGGGGTATGTGGTTTTTTTCTGGAAAAGCCCAATTG
AATTTTGAAATGCCCCTTCCAATTTAAATCAACTTTAACAAAATTATATT
CTATGAAAAAAATACAATTATAGGAGATTACAATTTTCTTATTACAGGAA
ATGTTATCAACGTGTCAACCCTCGGCAGTTCACGCCCTGTAAGTAAATTT
GTCATCTGAAATCTTTGGCATAATTTTATATTTCTTCAATTTTAAAATTT
TCGAACAAAATCACTAGAAAATGAAAATTCCTGATACCTTATTGGTATAT
ATTTTCGCGTGTTACAAATTTTCGCGAATCGCGAAATTTTTTCGAAAAAA
CGTGTTTCGCGTGTATTAAATTTTGCGATTGCAGACTTCTGGAAAATTTT
CGCGTGTATTAAATTTCGCGATTCGGAATATAAAGCAAGAAAAAGACTGA
TTTTGCTTGAAACACAACGTTTTTGATNNNNNNNNNNNNNNNNNNNNNNT
TTCGCGATTCGGAATATAAAGCAAGAAAAAGACTGATTTTGCTTGAAACA
CAACGTTTTTGATGTAAAAATACTAACAAATTACTAAGAAAGAATTTTTC
GTGTGTATTTAATTTCGCGATTTTGTAATTTTGAAAAATTTAAACAGTAT
TTAATTTCGCGAAAATTGACCAAAAAAACTCGCGAAATTAAGTACCCGCG
AAAATTTGTAACACGCGAAAATATATACCAATAAGGTAATTTGGATTTAA
AAATATTTTGAAAATTGTCAAGCTATATTATAGCAATAAAAACAGTCCTA
AAAATTTCCTTTTTATTCTCAGCAAATTGGCTTTAGCGCTTATTGCATGA
GCAAAGCAGCATTAGATCAGTTCACAAGAGCTGCAGCCATCGAATTAGGA
GCTGATCAAGTTCGTGTCAATTGTGTCAACCCAAGCATCATTGCCACTGA
TAAATGCTCAAACAGCTCAGATCCTAGTGTCAAAGTAAGTAAAACGTTTG
AACTAAAGTACATCCCTGTCTCACAGCCCCGGTGGAACTATTTTTCTCAG
TGGGAATGAAAATTCCTATTGAAATCCCAATGGGGATATAAATTCTTTTC
TTCAAAGGTTAAAAAAAACTCAGTGGCAAAGGTTTTGAAGTTCAATTTTT
AAGCATTCAATTTGGAATGGGGATGAAATTTTATGTCAATGTTTCCAGTG
GGGCTGGGCTCCTAGCGGTTCTGTGACACCGGAGTATTTAAGTTGTACAG
TTGCTGCTCATTAATTCAATTTTCAAGGGGAAATTTCATCGAATGAGGGA
GCGTGACGAATGGTAAAACGTTGTTTATGAACGTTTCTTATTAATGGTGG
CTTTCAATTATGTCGAATGAGAAAGCGTCAACTGTATGTGGACGGCAAAA
CAACCTTTTTTTATTAGATCGTGTACTATAGTCCGATGTCTGGGGAGGTT
AAGGTTATTCTTTCATACACGAGTCTAGCAAGGGCTTGTGTATCTTTATT
TGTTACCAACTTACTCTTAGGTGCCAAATAAACAAGGGTTCGATGTAACG
GGGGAGGGGTTGGAAAATTTTCAAAATTTTAATAAACGGGGGGGACCTAA
TTGCTGGGGGGTTGGAGATTGTAATTCTGAAAACCCAAAAATAAGGTAAA
CATAGGCTAAAATGATATAGGCTCTTTGGAGCAAAATAAGGCGACTTCTT
TTTGCTAACTGAAAATATTCTTAAAAACTAATAAACGGGGGGGGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGG
GGGGTCCTAATAAGGTCCGGGGGTGGAAATGTTCCAATAATTAACAAGCG
GGGACCGTTTATTTGGAACCTAGGAGTAAAGCATTTTAATACTCTCAAAC
AAGGTTTCAAACATAAAACAGGTATTTGAAGAACGAAAGTAAAAATCTTG
AATGATTATTTCAGGCTGCAATGGAGAGGAGTAAAATGACACACGCCCTT
GGCCGTGCTGGTACAGTTGACGAAGTAGCCCAAGCCATCTTGTTTCTAGC
GTCAGGAGCTGCTTCATACATCACAGGAGCATCGATTCCTATTGACGGGG
GTCGATCAACTATGATTCCAGTCTAACATAATTGCCTTATGATGTAAATA
CGACGAGGACATTAAATCTGAATAAATATCTGTTTCAGTTCAAATAATCT
TTGTTCAATTCAATTCCCACCAACAATATACAGCTTTAAACAACATAGTT
TGTCTTTTTCGAGGAAGCTTTTAAATTTTGCTACACACAATATCAGCTAT
TAGATGTAGATAAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036484XLOC_036484Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057872-exon-scaffold_30-1575043694:37034..37139TCONS_00057872-exon-scaffold_30-1575043694:37034..37139Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1575043694:36174..36539TCONS_00057872-exon-scaffold_30-1575043694:36174..36539Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1575043694:35652..35692TCONS_00057872-exon-scaffold_30-1575043694:35652..35692Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1575043694:34856..35017TCONS_00057872-exon-scaffold_30-1575043694:34856..35017Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1575043694:33474..33825TCONS_00057872-exon-scaffold_30-1575043694:33474..33825Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1510915933:37034..37139TCONS_00057872-exon-scaffold_30-1510915933:37034..37139Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1510915933:36174..36539TCONS_00057872-exon-scaffold_30-1510915933:36174..36539Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1510915933:35652..35692TCONS_00057872-exon-scaffold_30-1510915933:35652..35692Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1510915933:34856..35017TCONS_00057872-exon-scaffold_30-1510915933:34856..35017Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1510915933:33474..33825TCONS_00057872-exon-scaffold_30-1510915933:33474..33825Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1491911889:37034..37139TCONS_00057872-exon-scaffold_30-1491911889:37034..37139Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1491911889:36174..36539TCONS_00057872-exon-scaffold_30-1491911889:36174..36539Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1491911889:35652..35692TCONS_00057872-exon-scaffold_30-1491911889:35652..35692Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1491911889:34856..35017TCONS_00057872-exon-scaffold_30-1491911889:34856..35017Clytia hemisphaericaexon
TCONS_00057872-exon-scaffold_30-1491911889:33474..33825TCONS_00057872-exon-scaffold_30-1491911889:33474..33825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:33474..37139 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3440.41	3483.32	3684.31	3639.84	112.87	86.0495	32.8674	27.2469	12.192	13.055	7.07603	8.48844	0.836502	0.778849	8.06524	9.6655	13.1643	6.62354	7.97474	4.88777	9.91241	4.78154	1741.54	1338.32	0.559469	0.457148	80.9482	113.409	806.143	944.634
Blast
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BLAST of TCONS_00057872 vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.342e-34
Identity = 78/239 (32.64%), Postives = 132/239 (55.23%), Query Frame = 1 
Query:  106 GAASGIGQGTAYMFAKSGARLVVTDRDETNLKETAKKCEEMSKQKPLAIVGDLTVQSDLENLINKTMETFKQLDVLINNAGDSIMGTCLQTSTEDFDKMMNINIRSVFQLTKMAIPHL--KKTKGNVINVSTLGSSRPQIGFSAYCMSKAALDQFTRAAAIELGADQVRVNCVNPSIIATDKC-SNSSDPSVKAAMERSKMTHALGRAGTVDEVAQAILFLASGAASYITGASIPIDGG 813
            GA  GIG+GT      +GAR+V   R + +L    ++C  +   +P+ +  DL    D E    + + +   +D+L+NNA  +++   L+ + E FD+   +N+R+V Q++++    L  +   G ++NVS+  S R     S YC +K ALD  T+  A+ELG  ++RVN VNP+++ T    +  SDP  KA    +++   LG+   V+ V  AILFL S  +   TG+++P++GG
Sbjct:   14 GAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI---EPVCV--DL---GDWEA-TERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPH-KAKTMLNRI--PLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240
The following BLAST results are available for this feature:
BLAST of TCONS_00057872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCXR2.342e-3432.64L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
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