TCONS_00057842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057842
Unique NameTCONS_00057842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057842 ID=TCONS_00057842|Name=TCONS_00057842|organism=Clytia hemisphaerica|type=transcript|length=328bp
gattgtgttcaattgcgttcaattgattcggcgttcaattcgtttgattg
acatctggctaaattttaaaaaaaacattgttaccttcattttctaaaaa
gtgGCACACTGTTTCAAGACTCCACGCAGCAGAAGGTGCTGTTTTCACTG
TCAAAGTCGAAGTTACATATTTAAACACTGATATCACTTCTCGGACTTCA
GAGTGCACGCTCAACCAAAAATGtatatttgcttcaaaaaagtatgCGAA
ACTATATTATAGTGTTATACAGAGTGGAATTATTGGGTGCCCTTTCTGAT
AAGTGAAACCTTTATATCGCTAAATAAT
Run BLAST on NCBI

transcript from alignment at scaffold_299:79248..79575

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057842 ID=TCONS_00057842|Name=TCONS_00057842|organism=Clytia hemisphaerica|type=transcript|length=328bp|location=Sequence derived from alignment at scaffold_299:79248..79575 (Clytia hemisphaerica)
ATTATTTAGCGATATAAAGGTTTCACTTATCAGAAAGGGCACCCAATAAT
TCCACTCTGTATAACACTATAATATAGTTTCGcatacttttttgaagcaa
atataCATTTTTGGTTGAGCGTGCACTCTGAAGTCCGAGAAGTGATATCA
GTGTTTAAATATGTAACTTCGACTTTGACAGTGAAAACAGCACCTTCTGC
TGCGTGGAGTCTTGAAACAGTGTGCcactttttagaaaatgaaggtaaca
atgttttttttaaaatttagccagatgtcaatcaaacgaattgaacgccg
aatcaattgaacgcaattgaacacaatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036462XLOC_036462Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057842-exon-scaffold_299-1491911889:79248..79575TCONS_00057842-exon-scaffold_299-1491911889:79248..79575Clytia hemisphaericaexon
TCONS_00057842-exon-scaffold_299-1510915933:79248..79575TCONS_00057842-exon-scaffold_299-1510915933:79248..79575Clytia hemisphaericaexon
TCONS_00057842-exon-scaffold_299-1575043694:79248..79575TCONS_00057842-exon-scaffold_299-1575043694:79248..79575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_299supercontigscaffold_299:79248..79575 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.408381	0	0.386705	0	0.844957	0	1.14984	1.54061	0.311413	0.749209	1.20814	0.264079	0.207949	0	1.94713	0.73671	0.841936	0.28896	0.633816	0.331622	1.56714	1.62776	1.58433	0.468969	0.320078	0	0	1.30879	2.22466	1.18492
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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