TCONS_00057820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057820
Unique NameTCONS_00057820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057820 ID=TCONS_00057820|Name=TCONS_00057820|organism=Clytia hemisphaerica|type=transcript|length=1489bp
TTTCTGTTTCCAATAAGTTATGATTAGTGATGCCcttccattaaaaaaaa
agattcaatcTCAAAATGTTGGGTTGGGCGCTGACGTCAATACTTCAGCA
CCTTTACTGGTCATCGAAATCATGTTTTCCACCCTTATGCTGATACCATG
GTATTCTTTTGGAGCAAAGTCCGCACCAAGTGAAATATATATACCAGGTT
CAATCGTAAACACCATTCCAACTTGCAGCGGAATACCACTGTGCAGGGAA
GGCGTATCATGCACGTCTAATCCGATATGGTGTCCAACAAAATGCGGACA
AAATTTCCGCACATGAGTTCCTGTCTCGTTCGGTGGAAGATTTTTCGAAA
TCAGCGATAGACTTTGTAACCCTTCGCCAAGAAAGTCTAACATGCTCTCA
TGGAGCATTTCAAGTGAAACACCAACATGGCATCTCATCAATAACTTATC
ATGTGCTCTCTGAACAATCCTATAAATCATTGACCTCGGGTCCGGACCCA
AATGGCCGGAGATGGGCCATGACCTGGTTATGTCTGTAGTATATCCGTTA
AATTGGCATCCAGCATCAAACAAAACCCAGGTTCCGGAGAGTAACATTGT
ATTCTCATTCGTTGAGGTGtgtggtttgttttgaattgattGTCCAGTGC
TGACTACCGGACTAAAAGCAATATTTTCAGCTCCCATCAGTTTACACCGA
TATTCAAAATAAGACGAAATGTATTTAGACGATATCTGATCAAACTTCCA
ATTCatgatttctttaaaaatctctGAAACGATTTTAGCAGCACGTCTCA
AAATCCAGATTTCTTCTCTTGATTTTATCAGACGAAGCATCTGTACAAAG
TAACCTAGCTCTGATATTATCTTTTCCTTCACGTCACGACTAGCGATTTC
AAGGAGCGAATGCGTGTGGTTGTTGATTATAGGATGAAAAGATTTATTGT
ACCAGAAACAGGTATGGTGGTATTTGTATCGGGCTTTCAAGACGGTTTCT
ACATCTGTTAATGTGAAGATTGTTACATTCTGCTGAATGTTGTTAGAGGT
TTTAATGCCCCTTGTGAAAACCAGGTTGCCGATTGAATTCTTATGACGGT
ATTTCTCGAGAACAATAATTTCATTTGGCTCATTCCGACCTGTTAGATAA
AGTGCGTCTCTATCTTGGTAAAAGTCATAGTTTATGTCATGTGATCTCTT
TTGATTTCGATTAGCCAATAGGAATACGACATTTTGATCACATGATTTGT
TTGAAGTAACGTGCTGTAAGAGATTGAAGAGATTTTGTTGTCTCAGTTTA
AATTCTCTTCGTTGAAACCCTAGCGGTTGAAAAGTCATGTCCTGAAACCA
TCCTTGATGTTCATTTGATGTATGACTTTCAAAACAACGCCAGAACGATC
TtgtgatgaaaataataaacatGAACACAAAGATAATatgaaaattcatt
ttgctaCGAATAATCGTGAACATAATCttcttcaaaaac
Run BLAST on NCBI

protein sequence of TCONS_00057820-protein

>TCONS_00057820-protein ID=TCONS_00057820-protein|Name=TCONS_00057820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
FLKKIMFTIIRSKMNFHIIFVFMFIIFITRSFWRCFESHTSNEHQGWFQD
MTFQPLGFQRREFKLRQQNLFNLLQHVTSNKSCDQNVVFLLANRNQKRSH
DINYDFYQDRDALYLTGRNEPNEIIVLEKYRHKNSIGNLVFTRGIKTSNN
IQQNVTIFTLTDVETVLKARYKYHHTCFWYNKSFHPIINNHTHSLLEIAS
RDVKEKIISELGYFVQMLRLIKSREEIWILRRAAKIVSEIFKEIMNWKFD
QISSKYISSYFEYRCKLMGAENIAFSPVVSTGQSIQNKPHTSTNENTMLL
SGTWVLFDAGCQFNGYTTDITRSWPISGHLGPDPRSMIYRIVQRAHDKLL
MRCHVGVSLEMLHESMLDFLGEGLQSLSLISKNLPPNETGTHVRKFCPHF
VGHHIGLDVHDTPSLHSGIPLQVGMVFTIEPGIYISLGADFAPKEYHGIS
IRVENMISMTSKGAEVLTSAPNPTF
Run BLAST on NCBI

transcript from alignment at scaffold_298:369746..371234

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057820 ID=TCONS_00057820|Name=TCONS_00057820|organism=Clytia hemisphaerica|type=transcript|length=1489bp|location=Sequence derived from alignment at scaffold_298:369746..371234 (Clytia hemisphaerica)
gtttttgaagaaGATTATGTTCACGATTATTCGtagcaaaatgaattttc
atATTATCTTTGTGTTCatgtttattattttcatcacaAGATCGTTCTGG
CGTTGTTTTGAAAGTCATACATCAAATGAACATCAAGGATGGTTTCAGGA
CATGACTTTTCAACCGCTAGGGTTTCAACGAAGAGAATTTAAACTGAGAC
AACAAAATCTCTTCAATCTCTTACAGCACGTTACTTCAAACAAATCATGT
GATCAAAATGTCGTATTCCTATTGGCTAATCGAAATCAAAAGAGATCACA
TGACATAAACTATGACTTTTACCAAGATAGAGACGCACTTTATCTAACAG
GTCGGAATGAGCCAAATGAAATTATTGTTCTCGAGAAATACCGTCATAAG
AATTCAATCGGCAACCTGGTTTTCACAAGGGGCATTAAAACCTCTAACAA
CATTCAGCAGAATGTAACAATCTTCACATTAACAGATGTAGAAACCGTCT
TGAAAGCCCGATACAAATACCACCATACCTGTTTCTGGTACAATAAATCT
TTTCATCCTATAATCAACAACCACACGCATTCGCTCCTTGAAATCGCTAG
TCGTGACGTGAAGGAAAAGATAATATCAGAGCTAGGTTACTTTGTACAGA
TGCTTCGTCTGATAAAATCAAGAGAAGAAATCTGGATTTTGAGACGTGCT
GCTAAAATCGTTTCagagatttttaaagaaatcatGAATTGGAAGTTTGA
TCAGATATCGTCTAAATACATTTCGTCTTATTTTGAATATCGGTGTAAAC
TGATGGGAGCTGAAAATATTGCTTTTAGTCCGGTAGTCAGCACTGGACaa
tcaattcaaaacaaaccacaCACCTCAACGAATGAGAATACAATGTTACT
CTCCGGAACCTGGGTTTTGTTTGATGCTGGATGCCAATTTAACGGATATA
CTACAGACATAACCAGGTCATGGCCCATCTCCGGCCATTTGGGTCCGGAC
CCGAGGTCAATGATTTATAGGATTGTTCAGAGAGCACATGATAAGTTATT
GATGAGATGCCATGTTGGTGTTTCACTTGAAATGCTCCATGAGAGCATGT
TAGACTTTCTTGGCGAAGGGTTACAAAGTCTATCGCTGATTTCGAAAAAT
CTTCCACCGAACGAGACAGGAACTCATGTGCGGAAATTTTGTCCGCATTT
TGTTGGACACCATATCGGATTAGACGTGCATGATACGCCTTCCCTGCACA
GTGGTATTCCGCTGCAAGTTGGAATGGTGTTTACGATTGAACCTGGTATA
TATATTTCACTTGGTGCGGACTTTGCTCCAAAAGAATACCATGGTATCAG
CATAAGGGTGGAAAACATGATTTCGATGACCAGTAAAGGTGCTGAAGTAT
TGACGTCAGCGCCCAACCCAACATTTTGAgattgaatctttttttttaat
ggaagGGCATCACTAATCATAACTTATTGGAAACAGAAA

Coding sequence (CDS) from alignment at scaffold_298:369746..371234

>TCONS_00057820 ID=TCONS_00057820|Name=TCONS_00057820|organism=Clytia hemisphaerica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_298:369746..371234 (Clytia hemisphaerica)
tttttgaagaaGATTATGTTCACGATTATTCGtagcaaaatgaattttca
tATTATCTTTGTGTTCatgtttattattttcatcacaAGATCGTTCTGGC
GTTGTTTTGAAAGTCATACATCAAATGAACATCAAGGATGGTTTCAGGAC
ATGACTTTTCAACCGCTAGGGTTTCAACGAAGAGAATTTAAACTGAGACA
ACAAAATCTCTTCAATCTCTTACAGCACGTTACTTCAAACAAATCATGTG
ATCAAAATGTCGTATTCCTATTGGCTAATCGAAATCAAAAGAGATCACAT
GACATAAACTATGACTTTTACCAAGATAGAGACGCACTTTATCTAACAGG
TCGGAATGAGCCAAATGAAATTATTGTTCTCGAGAAATACCGTCATAAGA
ATTCAATCGGCAACCTGGTTTTCACAAGGGGCATTAAAACCTCTAACAAC
ATTCAGCAGAATGTAACAATCTTCACATTAACAGATGTAGAAACCGTCTT
GAAAGCCCGATACAAATACCACCATACCTGTTTCTGGTACAATAAATCTT
TTCATCCTATAATCAACAACCACACGCATTCGCTCCTTGAAATCGCTAGT
CGTGACGTGAAGGAAAAGATAATATCAGAGCTAGGTTACTTTGTACAGAT
GCTTCGTCTGATAAAATCAAGAGAAGAAATCTGGATTTTGAGACGTGCTG
CTAAAATCGTTTCagagatttttaaagaaatcatGAATTGGAAGTTTGAT
CAGATATCGTCTAAATACATTTCGTCTTATTTTGAATATCGGTGTAAACT
GATGGGAGCTGAAAATATTGCTTTTAGTCCGGTAGTCAGCACTGGACaat
caattcaaaacaaaccacaCACCTCAACGAATGAGAATACAATGTTACTC
TCCGGAACCTGGGTTTTGTTTGATGCTGGATGCCAATTTAACGGATATAC
TACAGACATAACCAGGTCATGGCCCATCTCCGGCCATTTGGGTCCGGACC
CGAGGTCAATGATTTATAGGATTGTTCAGAGAGCACATGATAAGTTATTG
ATGAGATGCCATGTTGGTGTTTCACTTGAAATGCTCCATGAGAGCATGTT
AGACTTTCTTGGCGAAGGGTTACAAAGTCTATCGCTGATTTCGAAAAATC
TTCCACCGAACGAGACAGGAACTCATGTGCGGAAATTTTGTCCGCATTTT
GTTGGACACCATATCGGATTAGACGTGCATGATACGCCTTCCCTGCACAG
TGGTATTCCGCTGCAAGTTGGAATGGTGTTTACGATTGAACCTGGTATAT
ATATTTCACTTGGTGCGGACTTTGCTCCAAAAGAATACCATGGTATCAGC
ATAAGGGTGGAAAACATGATTTCGATGACCAGTAAAGGTGCTGAAGTATT
GACGTCAGCGCCCAACCCAACATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036450XLOC_036450Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057820-proteinTCONS_00057820-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057820-exon-scaffold_298-1491911889:369746..371234TCONS_00057820-exon-scaffold_298-1491911889:369746..371234Clytia hemisphaericaexon
TCONS_00057820-exon-scaffold_298-1510915933:369746..371234TCONS_00057820-exon-scaffold_298-1510915933:369746..371234Clytia hemisphaericaexon
TCONS_00057820-exon-scaffold_298-1575043694:369746..371234TCONS_00057820-exon-scaffold_298-1575043694:369746..371234Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:369746..371234 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101852	0	0	0.0411062	0.878481	0.864507	1.07159	1.35284	0.545777	0.154805	0.388897	0.505809	0.431087	0.0996352	0.445822	0.795212	0.363935	0.387978	0	0.0464179	0.231262	0.303123	0.187388	0.427189	0.360316	0.582191	0.0765709	0.0405605	0.0385614	0.0419285
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007865Aminopep_P_N
IPR000994Pept_M24
IPR029149Creatin/AminoP/Spt16_NTD
IPR028980Creatinase/Aminopeptidase_P_N
Vocabulary: Molecular Function
TermDefinition
GO:0030145manganese ion binding
GO:0004177aminopeptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004177 aminopeptidase activity
molecular_function GO:0030145 manganese ion binding
Blast
[Close]
BLAST of TCONS_00057820 vs. Swiss-Prot (Human)
Match: XPP3 (Probable Xaa-Pro aminopeptidase 3 OS=Homo sapiens GN=XPNPEP3 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 8.782e-67
Identity = 139/431 (32.25%), Postives = 223/431 (51.74%), Query Frame = -2 
Query:   82 GFQRREFKLRQQNLFNLLQHVTSNKSCDQNVVFLLANRNQKRSHDINYDFYQDRDALYLTGRNEPNEIIVLEKYRHKN--SIGNLVFTR----------GIKTSNNIQQNVT----IFTLTDVETVLKARYKYHHTCFWYN--KSFHPIINNHTHSLLEIASRDVKEKIISELGYFVQMLRLIKSREEIWILRRAAKIVSEIFKEIMNWKFDQISSKYISSYFEYRCKLMGAENIAFSPVVSTGQSIQNKPHTSTNENTMLLSGTWVLFDAGCQFNGYTTDITRSWPISGHLGPDPRSMIYRIVQRAHDKLLMRCHVGVSLEMLHESMLDFLGEGLQSLSLISKNLPPNETGTHVRKFCPHFVGHHIGLDVHDTPSLHSGIPLQVGMVFTIEPGIYISLGADFAPKEYHGISIRVENMISMTSKGAEVLTS 1320
            G  + E+ LR+  L +L+Q     +S     V +L+N     S+DI Y F+QD + LYL G  EP+ I+VL+    K   S   ++F            G ++  +    +T     +TL + + +L  + K      WY+  +  H  +++     L  A    K K+   +   +Q LRLIKS  EI  ++ A K+ S+ F E M      +   ++ + FE+ C+  GA+ +A+ PVV+ G    N  H   N N ++  G  VL D GC+ + Y +DITR+WP++G     P++ +Y  V       L  C  G SLE ++  ML  +G+ L+ L ++ KN+  N      RK+CPH VGH++G+DVHDTP +   +PLQ GMV TIEPGIYI      AP+++ G+ +R+E+ + +T     +L++
Sbjct:   66 GLSQVEYALRRHKLMSLIQKEAQGQSGTDQTVVVLSNPTYYMSNDIPYTFHQDNNFLYLCGFQEPDSILVLQSLPGKQLPSHKAILFVPRRDPSRELWDGPRSGTDGAIALTGVDEAYTLEEFQHLL-PKMKAETNMVWYDWMRPSHAQLHSDYMQPLTEAKAKSKNKVRG-VQQLIQRLRLIKSPAEIERMQIAGKLTSQAFIETMFTSKAPVEEAFLYAKFEFECRARGADILAYPPVVAGGNR-SNTLHYVKN-NQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFT-APQAELYEAVLEIQRDCLALCFPGTSLENIYSMMLTLIGQKLKDLGIM-KNIKENNAFKAARKYCPHHVGHYLGMDVHDTPDMPRSLPLQPGMVITIEPGIYIPEDDKDAPEKFRGLGVRIEDDVVVTQDSPLILSA 490
The following BLAST results are available for this feature:
BLAST of TCONS_00057820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPP38.782e-6732.25Probable Xaa-Pro aminopeptidase 3 OS=Homo sapiens ... [more]
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