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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057769 ID=TCONS_00057769|Name=TCONS_00057769|organism=Clytia hemisphaerica|type=transcript|length=3825bp
CAAAATTCTTGGTCAGTTTATCAGTCACATTCAACACTTTCTCCCATCCA
CCTAAGCCTGTGTCTACACGATCAGCAATCTTTACGAAACTATCTTTAAT
TCCTCCGAACTTCTCTTTCAGTTTTGTGGAGAAAGAATTCTTGAATCGCT
TTCCGAAGATGTTGGTGATATCACAGCCTTGACACTGTCCTGAAATCCGT
CCGATATCCTTAATGACGTCACCGGTTGTCATGGCGAGCTGTTGAAATTC
CGTCAACTTGTTACGCAGGTCACGTGGATTTGTCATCAACATTTTACCAA
AATCGTATCCATCTAAAGCGTCTACAAAATCGTCAACGGAATCCGTCAGT
TTACCGATATCGGAGATTGGACCATCTTGAAGTTGATTCAACATTCTGGA
AACGTTGGAGAAGAGGTTCTGATACTTCAACAAGCGCTCTTTACCGATGG
TGTTCTGGAGAGCTTCGGTAAGATCGTTTCTGGTGAGCGAATAATTCAAT
GCGTTGGCACCTTTGATGGTTGTTGAGATGGCTTGATCGAAGATAGATCC
AGATTGTCTGAACACTTCTTGCAATGCTGGAATCTTTTCATCCCAGGATG
CATCATTCAGTTGTTGCCATGACGATTTCAGCTCTGGTAATTGTTTCTCA
ATATCTCCGATTCCTTCAATAGTGATATCAGCGGCTTCAAGAACTTGTCC
AGTTTTTGTTAACCCGCTTATCAAGGAGTTGGTAATTCTTTCAACATTCT
CACCAAAGACATTCAACCATTTGCCATCGATTCCGGCTGCATTTAACGTT
TCTTtggacaatttaaaaatctctgGTAACTCTCTCAGCAGCTCTTTACT
GTCTTCTGCTAATGTCTTGGCGATGTCCAGTCGCGCGCCGAGGGGTCCAG
ATTTGATTNCTCTTTACTGTCTTCTGCTAAGGTTTTGGCGATGTCCAGTC
GCGCGCCGAGGGGTCCAGATTTGATTCCATTGGATTTGTTCTTGAGTTGT
TGAAACTTGGTTTGAATATCAAGAGCTTTCTGATAAACTTTCTTTCCGCG
TTGGCCAACTTGGTATGACCTGTTCATGACGTCACTCAGCATGTTGACAA
CTTTGTTAACGTTGTTTCCAACAATGTCCAAATCAACATCTCGATTCAAT
AAAATCTCTAACAAGTTCTCTGCATGGTGTTGAATAGATGAAATATTCTG
TGTTGACATATCCAGCGCTGTTGATAACTCTTTCAAAGTCTCCAAATTGA
ATTTGCCACCCTTCTTGATCGCTTTGAATCGGTTTTTCATGATGTCAGCA
ACTTTCTGCAACTGTTGGACTTCGTGAATAGATCCACCAACTTTGTGAGC
CACTTTCTCTATTTTGGTGAACATATATTCAAAAGCTTCGTTGATCTTAA
CAGCACTGTTCTGTAGAAATCGATAACCGAAGATCTTCTCAACTTGGCAG
CTTGAGCAATTCCTCATGATTCGATCCATCTCTTTAAAAGCACCTGACAA
ACTGGTGAACAACTCTTTCATCTCGGTAACCTTACCAGGGATAAGTTTGG
GATCAGCTGTCATGATCAGAGACAAATCATATGTTTTCAACTCATCAATC
AAATCTTCAGTCGCATCTTTGATTTCACCAATCTTACTCAACGGTTTAGT
TTTCAACTCTTTGACCATGTCTTGTACTTCATCAAACATATCACCAtact
ttttcatcttcttcttcaattCTTCATACTTTTTCTTATATTTGCTAATC
CCTCCCATGAAGGATTCATATTTCTCTTTCAAACTGTCCGAGCCTCGATC
AAAGAATCCGTCCACTTGTGATGATTTATCGGATAGCTCCTTAGCAAGTC
TCGTTTTTCGGACACCAACTGAAGAACGCATAGCGGATACCATCTGTGGA
AAATCTGTAGAATCTTCAGCCACGTTTGGAAGATCAAGACCAATTTGTTG
TCCGATTTCGTTTGACTCGTTGGAAAGTTTGTGAAGAGTGGATTTGATTT
TGCCCAACAGATGACCAACACTTGGCGCAAATTCGTTGTCAATCTTGGAG
ACGCTCACCGGAGGGAGATTTAAAGCATACAACTCCTCGAATGACTGACC
GTATCTTTTAACCACTTTACTGACCTTCGAAACCAAATCTGCTCGTCTTT
GTAAAGCACTTACGTCATCACTTAAATCGTTCGTTTCAATCTCTCGTAGG
AACATTGAAGCGCTTTCGATGTTCTCTTTCAGAACCGCAGCTTTAGTTCC
ATTATACAAAGATATAGTCTGCGTACGCAAATCCTTGATGTTTTGAACAA
TGTCTTTTAGATCGGCATTCTTCACAGTAGATAATTGATCGAAATTCCCC
TTCAAATTCTTCTTCACCATGTTTACagctttgatgacgtcatctaaaGC
TTCTATGACGTCATCTAAACTTTCCCGCGAAAGACCAGTGCCGGATTCAG
AGAACATTTTCAAAGAAGTTTGGACTTGCTCCAAGGATGAGATGAGGGTT
TGGAACCCTTTGGGAAGCTTTTTGACCTTCTGTGCGTACTTCGATGCATA
CTTAGAAATGGGTTTCATGTATTTATCAAACTTATCGAACATTTTGCTCA
ACTTGGACTGTCCGAAAACATCTTGTGGTGAACATTTCCCATCCTTGCAT
TTCTCAACAATCTTTTTCATCCCTTTCAGAATGTTGAGTGCTGAATTGAT
GTATTCTTGAAAAGTGTTCATAGCGATGGTGGAAACCTTTGGTGAAAATG
AAATCATAACTGGGATATTGAAATCTGGTGATTTCTGCATGAAATCTTCA
GCTAAATCCATCAATTTACCAACTGGACTTTCTAGTCCTCCATTAGAGTA
TTCGTTTATCAAAGAACGTAAATCTTGAGCTAAATCCTGGATGGTTCTCT
TTTCCAAAGGTTTGACATTGTTCAAGAATTCCTCAAGATCTGACAGAGCT
TCATTGGTCCATGAGGTTGTATTGCTTGATTTGACGTCTTGTTTCAAGGT
GCATCCTTTCAAACCGTTTAACTCCTTGTTCAAATACACCATAAGGTACT
TGGTGAACTGGCTGACTCTTTGTGTATACAACATTAACTTATCGTTAtct
tttgctgacatcagcactttGAATTGAGCATTTGCACCCACAATGAGACG
TGAAAGTTGCGTCGGATTGGCAGGTTGTTTATCAGTGCATAATTCTTGAA
GCTCTGGTATGATTCGGTTGAAGATCTTCCAGAAGCTCTGGATCAGGATT
TGAGTGCTTGTAGAATCAATATGAACTTTGGTTTGCCCGTTCCGACTGAC
CAAGTTTGGTAGTTTCTCCAATGCTTGTATAATATCTTGAATAACGGTCA
GTAAAGAGTGGATTTCAGCAAGATTAGTGGAGACTTTTTTACCAGCCAAT
AGTTTCTCTACTTGTGACACTATAGTGGCTTGAGAATGATGTTTGAGTTG
AACAGAACCTAATTCTTGTGATAAAGCATTAGTGAGAGTTTTGAAGAAAT
CTTGATGTTCTTTGAAAAGTTGGATGGAAGTAGCACTCCTTTtccattga
ttttttttcatatcttCTACGTTAATTCGAACTTGCTTCCATAATTCGAT
AATACTCTGTAAAGGTGTGAAGATCTGTGCTTCAATGACGTCACAGTTCG
TTTGATCAATGACTTTTAGAATATCGTTGACGCGTGCGCAGACATCGTCG
ATCTTTTTGGTTCGATATCCAACAACCCATTTGGTTCGACAAACTTTTTG
TTCGAATTTTTGCAGACTTTGCTTCGTACCAAGTAAAACGTGAACAAggg
taggggtggtacagttcTGTTGACA Run BLAST on NCBI transcript from alignment at scaffold_298:188862..192738- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057769 ID=TCONS_00057769|Name=TCONS_00057769|organism=Clytia hemisphaerica|type=transcript|length=3877bp|location=Sequence derived from alignment at scaffold_298:188862..192738- (Clytia hemisphaerica)
CAAAATTCTTGGTCAGTTTATCAGTCACATTCAACACTTTCTCCCATCCA
CCTAAGCCTGTGTCTACACGATCAGCAATCTTTACGAAACTATCTTTAAT
TCCTCCGAACTTCTCTTTCAGTTTTGTGGAGAAAGAATTCTTGAATCGCT
TTCCGAAGATGTTGGTGATATCACAGCCTTGACACTGTCCTGAAATCCGT
CCGATATCCTTAATGACGTCACCGGTTGTCATGGCGAGCTGTTGAAATTC
CGTCAACTTGTTACGCAGGTCACGTGGATTTGTCATCAACATTTTACCGA
AATCGTATCCATCTANGCAGGTCACGTGGATTTGTCATCAACATTTTACC
AAAATCGTATCCATCTAAAGCGTCTACAAAATCGTCAACGGAATCCGTCA
GTTTACCGATATCGGAGATTGGACCATCTTGAAGTTGATTCAACATTCTG
GAAACGTTGGAGAAGAGGTTCTGATACTTCAACAAGCGCTCTTTACCGAT
GGTGTTCTGGAGAGCTTCGGTAAGATCGTTTCTGGTGAGCGAATAATTCA
ATGCGTTGGCACCTTTGATGGTTGTTGAGATGGCTTGATCGAAGATAGAT
CCAGATTGTCTGAACACTTCTTGCAATGCTGGAATCTTTTCATCCCAGGA
TGCATCATTCAGTTGTTGCCATGACGATTTCAGCTCTGGTAATTGTTTCT
CAATATCTCCGATTCCTTCAATAGTGATATCAGCGGCTTCAAGAACTTGT
CCAGTTTTTGTTAACCCGCTTATCAAGGAGTTGGTAATTCTTTCAACATT
CTCACCAAAGACATTCAACCATTTGCCATCGATTCCGGCTGCATTTAACG
TTTCTTTGGACAATTTAAAAATCTCTGGTAACTCTCTCAGCAGCTCTTTA
CTGTCTTCTGCTAATGTCTTGGCGATGTCCAGTCGCGCGCCGAGGGGTCC
AGATTTGATTNCTCTTTACTGTCTTCTGCTAAGGTTTTGGCGATGTCCAG
TCGCGCGCCGAGGGGTCCAGATTTGATTCCATTGGATTTGTTCTTGAGTT
GTTGAAACTTGGTTTGAATATCAAGAGCTTTCTGATAAACTTTCTTTCCG
CGTTGGCCAACTTGGTATGACCTGTTCATGACGTCACTCAGCATGTTGAC
AACTTTGTTAACGTTGTTTCCAACAATGTCCAAATCAACATCTCGATTCA
ATAAAATCTCTAACAAGTTCTCTGCATGGTGTTGAATAGATGAAATATTC
TGTGTTGACATATCCAGCGCTGTTGATAACTCTTTCAAAGTCTCCAAATT
GAATTTGCCACCCTTCTTGATCGCTTTGAATCGGTTTTTCATGATGTCAG
CAACTTTCTGCAACTGTTGGACTTCGTGAATAGATCCACCAACTTTGTGA
GCCACTTTCTCTATTTTGGTGAACATATATTCAAAAGCTTCGTTGATCTT
AACAGCACTGTTCTGTAGAAATCGATAACCGAAGATCTTCTCAACTTGGC
AGCTTGAGCAATTCCTCATGATTCGATCCATCTCTTTAAAAGCACCTGAC
AAACTGGTGAACAACTCTTTCATCTCGGTAACCTTACCAGGGATAAGTTT
GGGATCAGCTGTCATGATCAGAGACAAATCATATGTTTTCAACTCATCAA
TCAAATCTTCAGTCGCATCTTTGATTTCACCAATCTTACTCAACGGTTTA
GTTTTCAACTCTTTGACCATGTCTTGTACTTCATCAAACATATCACCATA
CTTTTTCATCTTCTTCTTCAATTCTTCATACTTTTTCTTATATTTGCTAA
TCCCTCCCATGAAGGATTCATATTTCTCTTTCAAACTGTCCGAGCCTCGA
TCAAAGAATCCGTCCACTTGTGATGATTTATCGGATAGCTCCTTAGCAAG
TCTCGTTTTTCGGACACCAACTGAAGAACGCATAGCGGATACCATCTGTG
GAAAATCTGTAGAATCTTCAGCCACGTTTGGAAGATCAAGACCAATTTGT
TGTCCGATTTCGTTTGACTCGTTGGAAAGTTTGTGAAGAGTGGATTTGAT
TTTGCCCAACAGATGACCAACACTTGGCGCAAATTCGTTGTCAATCTTGG
AGACGCTCACCGGAGGGAGATTTAAAGCATACAACTCCTCGAATGACTGA
CCGTATCTTTTAACCACTTTACTGACCTTCGAAACCAAATCTGCTCGTCT
TTGTAAAGCACTTACGTCATCACTTAAATCGTTCGTTTCAATCTCTCGTA
GGAACATTGAAGCGCTTTCGATGTTCTCTTTCAGAACCGCAGCTTTAGTT
CCATTATACAAAGATATAGTCTGCGTACGCAAATCCTTGATGTTTTGAAC
AATGTCTTTTAGATCGGCATTCTTCACAGTAGATAATTGATCGAAATTCC
CCTTCAAATTCTTCTTCACCATGTTTACAGCTTTGATGACGTCATCTAAA
GCTTCTATGACGTCATCTAAACTTTCCCGCGAAAGACCAGTGCCGGATTC
AGAGAACATTTTCAAAGAAGTTTGGACTTGCTCCAAGGATGAGATGAGGG
TTTGGAACCCTTTGGGAAGCTTTTTGACCTTCTGTGCGTACTTCGATGCA
TACTTAGAAATGGGTTTCATGTATTTATCAAACTTATCGAACATTTTGCT
CAACTTGGACTGTCCGAAAACATCTTGTGGTGAACATTTCCCATCCTTGC
ATTTCTCAACAATCTTTTTCATCCCTTTCAGAATGTTGAGTGCTGAATTG
ATGTATTCTTGAAAAGTGTTCATAGCGATGGTGGAAACCTTTGGTGAAAA
TGAAATCATAACTGGGATATTGAAATCTGGTGATTTCTGCATGAAATCTT
CAGCTAAATCCATCAATTTACCAACTGGACTTTCTAGTCCTCCATTAGAG
TATTCGTTTATCAAAGAACGTAAATCTTGAGCTAAATCCTGGATGGTTCT
CTTTTCCAAAGGTTTGACATTGTTCAAGAATTCCTCAAGATCTGACAGAG
CTTCATTGGTCCATGAGGTTGTATTGCTTGATTTGACGTCTTGTTTCAAG
GTGCATCCTTTCAAACCGTTTAACTCCTTGTTCAAATACACCATAAGGTA
CTTGGTGAACTGGCTGACTCTTTGTGTATACAACATTAACTTATCGTTAT
CTTTTGCTGACATCAGCACTTTGAATTGAGCATTTGCACCCACAATGAGA
CGTGAAAGTTGCGTCGGATTGGCAGGTTGTTTATCAGTGCATAATTCTTG
AAGCTCTGGTATGATTCGGTTGAAGATCTTCCAGAAGCTCTGGATCAGGA
TTTGAGTGCTTGTAGAATCAATATGAACTTTGGTTTGCCCGTTCCGACTG
ACCAAGTTTGGTAGTTTCTCCAATGCTTGTATAATATCTTGAATAACGGT
CAGTAAAGAGTGGATTTCAGCAAGATTAGTGGAGACTTTTTTACCAGCCA
ATAGTTTCTCTACTTGTGACACTATAGTGGCTTGAGAATGATGTTTGAGT
TGAACAGAACCTAATTCTTGTGATAAAGCATTAGTGAGAGTTTTGAAGAA
ATCTTGATGTTCTTTGAAAAGTTGGATGGAAGTAGCACTCCTTTTCCATT
GATTTTTTTTCATATCTTCTACGTTAATTCGAACTTGCTTCCATAATTCG
ATAATACTCTGTAAAGGTGTGAAGATCTGTGCTTCAATGACGTCACAGTT
CGTTTGATCAATGACTTTTAGAATATCGTTGACGCGTGCGCAGACATCGT
CGATCTTTTTGGTTCGATATCCAACAACCCATTTGGTTCGACAAACTTTT
TGTTCGAATTTTTGCAGACTTTGCTTCGTACCAAGTAAAACGTGAACAAG
GGTAGGGGTGGTACAGTTCTGTTGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057769-exon-scaffold_298-1575043694:192449..192738 | TCONS_00057769-exon-scaffold_298-1575043694:192449..192738 | Clytia hemisphaerica | exon |
| TCONS_00057769-exon-scaffold_298-1575043694:188862..192396 | TCONS_00057769-exon-scaffold_298-1575043694:188862..192396 | Clytia hemisphaerica | exon |
| TCONS_00057769-exon-scaffold_298-1510915933:192449..192738 | TCONS_00057769-exon-scaffold_298-1510915933:192449..192738 | Clytia hemisphaerica | exon |
| TCONS_00057769-exon-scaffold_298-1510915933:188862..192396 | TCONS_00057769-exon-scaffold_298-1510915933:188862..192396 | Clytia hemisphaerica | exon |
| TCONS_00057769-exon-scaffold_298-1491911889:192449..192738 | TCONS_00057769-exon-scaffold_298-1491911889:192449..192738 | Clytia hemisphaerica | exon |
| TCONS_00057769-exon-scaffold_298-1491911889:188862..192396 | TCONS_00057769-exon-scaffold_298-1491911889:188862..192396 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_298 | supercontig | scaffold_298:188862..192738 - |
Blast
The following BLAST results are available for this feature:
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