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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057734 ID=TCONS_00057734|Name=TCONS_00057734|organism=Clytia hemisphaerica|type=transcript|length=1641bpRun BLAST on NCBI protein sequence of TCONS_00057734-protein >TCONS_00057734-protein ID=TCONS_00057734-protein|Name=TCONS_00057734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp ETEENEFPQTLSLIVKKEIVVCDRVSSIPMVKIECNDGTESNEKAPGLKYRun BLAST on NCBI transcript from alignment at scaffold_298:65305..84711+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057734 ID=TCONS_00057734|Name=TCONS_00057734|organism=Clytia hemisphaerica|type=transcript|length=19407bp|location=Sequence derived from alignment at scaffold_298:65305..84711+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_298:65305..84711+ >TCONS_00057734 ID=TCONS_00057734|Name=TCONS_00057734|organism=Clytia hemisphaerica|type=CDS|length=2934bp|location=Sequence derived from alignment at scaffold_298:65305..84711+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057734 vs. Swiss-Prot (Human)
Match: ZN160 (Zinc finger protein 160 OS=Homo sapiens GN=ZNF160 PE=2 SV=3) HSP 1 Score: 228.024 bits (580), Expect = 6.835e-65 Identity = 147/413 (35.59%), Postives = 208/413 (50.36%), Query Frame = 2
Query: 227 DLIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRVHNQKKSFRCQECGETFTHKTYLEEHKRSLHGAANHITTKKTALSIEKKIKHKHFECQKCGKSFACKRSLMKHQLIHTGSD----SPCMDYLPDHTHENLXXXXXXXXXXXXXXXXXXXXXXXXIRPHMCDECGKGFTMQYEVKKHQDAVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINIVHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLKCHECDTKYSRKRDLDAHINTVHKKIKSFKFEICGDRFSQSSCLYRHQQIHEGTK-FSCNVCGNSFSRKDSLKKH 1450
+L HR+ +H K +KC ECGK FT+R L +H+ +H +K ++C ECG+ F H +YL H+R G K ++C +CGK+F +L HQLIHTG + C ++H R+H +P+ C+ECGK F+++ + HQ +H G KP++C ECG+ F YN YL RH H G KP+KC++C F +L +H ++H KPF C +CS F+ ++ L H IH KP+KC+ C K FS + L HQ +H G K Y C +CG S+ KS+L+ H +H KP KC+EC +++ L H VH K +K CG FS S L HQ IH G K + C+ CG F L H
Sbjct: 271 NLTSHRR-IHSGEKPYKCSECGKTFTVRSNLTIHQ-VIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGE-------------------KPYKCNECGKAFRGHSNLTTHQLIHTGEKPFKCNECGKLFTQNSH-----------------LISHWRIHTGEKPYKCNECGKAFSVRSSLAIHQ-TIHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATH-QVIHTGTKPFKCNECSKVFTQNSQLANH-RRIHTGEKPYKCNECGKAFSVRSSLTTHQ-AIHSGEKPYKCIECGKSFTQKSHLRSHRG-IHSGEKPYKCNECGKVFAQTSQLARHWR-VHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATH 639 HSP 2 Score: 197.978 bits (502), Expect = 1.897e-54 Identity = 140/429 (32.63%), Postives = 205/429 (47.79%), Query Frame = 2
Query: 224 RDLIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRVHNQKKSFRCQECGETFTHKTYLEEHKRSLHGA-------ANHITTKKTALSIEKKI--KHKHFECQKCGKSFACKRSLMKHQLIHTGSDS-PCMDYLPDHTHENLXXXXXXXXXXXXXXXXXXXXXXXXIRPHMCDECGKGFTMQYEVKKHQDAVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINIVHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLKCHECDTKYSRKRDLDAHINTVHKKIKSFKFEICGDRFSQSSCLYRHQQIHEGTK-FSCNVCGNSFSRKDSLKKH--METCE*P 1471
R + Q +H K +KC ECGK F L HR RVH +K ++C ECG+ F+ + L H+ G + + T+ + L+ ++I K ++C +CGK+F+ + SL HQ IH+G C++ T ++ + +P+ C+ECGK F ++ +H VH G KP++C +CG F+ L H H G KP+KC +C F L +H I H KP+ C +C FSM + L H IH KP+KC+ C K F++ HL HQ T H G K Y C++CG ++ +S L H +H KP KC+EC +++ L H +H K ++ CG F S L H IH G K + CN CG F + +L H M T E P
Sbjct: 409 RSSLAIHQTIHTGEKPYKCNECGKVFRYNSYLGRHR-RVHTGEKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGE--------------KPYKCNECGKVFAQTSQLARHWR-VHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRI-HTGEKPYKCNECGKAFSMHSNLTTH-KVIHTGEKPYKCNQCGKVFTQNSHLANHQRT-HTGEKPYRCNECGKAFSVRSSLTTH-QAIHTGKKPYKCNECGKVFTQNAHLANH-RRIHTGEKPYRCTECGKAFRVRSSLTTHMAIHTGEKRYKCNECGKVFRQSSNLASHHRMHTGEKP 816 HSP 3 Score: 183.726 bits (465), Expect = 1.076e-49 Identity = 113/320 (35.31%), Postives = 162/320 (50.62%), Query Frame = 2
Query: 494 KHFECQKCGKSFACKRSLMKHQLIHTGSDSPCMDYLPDHTHENLXXXXXXXXXXXXXXXXXXXXXXXXIRPHMCDECGKGFTMQYEVKKHQDAVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINIVHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLKCHECDTKYSRKRDLDAHINTVHKKIKSFKFEICGDRFSQSSCLYRHQQIHEGTK-FSCNVCGNSFSRKDSLKKH 1450
K ++C +CGK+F +L H+ IH+G +P+ C ECGK FT++ + HQ +H G KP++C ECG+ F +N YL H H G KP+KC++C F +LT+H ++H KPF C +C F+ ++ L H IH KP+KC+ C K FS + L +HQ T+H G K Y C++CG + + SYL +H VH KP KC+EC +S +L H +H K FK C F+Q+S L H++IH G K + CN CG +FS + SL H
Sbjct: 255 KPYKCNECGKAFTQNSNLTSHRRIHSGE-----------------------------------------KPYKCSECGKTFTVRSNLTIHQ-VIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFRGHSNLTTH-QLIHTGEKPFKCNECGKLFTQNSHLISHWR-IHTGEKPYKCNECGKAFSVRSSLAIHQ-TIHTGEKPYKCNECGKVFRYNSYLGRHRR-VHTGEKPYKCNECGKAFSMHSNLATH-QVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTH 527 HSP 4 Score: 135.191 bits (339), Expect = 2.273e-33 Identity = 89/280 (31.79%), Postives = 139/280 (49.64%), Query Frame = 2
Query: 230 LIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRVHNQKKSFRCQECGETFTHKTYLEEHKRSLHGAANHITTKKTALSIEKKIKHKHFECQKCGKSFACKRSLMKHQLIHTGSD----SPCMDYLPDHTHENLXXXXXXXXXXXXXXXXXXXXXXXXIRPHMCDECGKGFTMQYEVKKHQDAVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINIVHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFK 1057
L +H + VH K +KC +CG+ F+ R L H+ +H +K ++C ECG+ F H +YL H+R G K ++C +CGK+F+ +L H++IHTG + C ++H + R H +P+ C+ECGK F+++ + HQ A+H G KP++C ECG+ FT N +L H H G KP++C +C F + SLT+H+ I H K + C +C F S+ L H + +H KP+K
Sbjct: 580 LARHWR-VHTGEKPYKCNDCGRAFSDRSSLTFHQ-AIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGE-------------------KPYKCNECGKAFSMHSNLTTHKVIHTGEKPYKCNQCGKVFTQNSH-----------------LANHQRTHTGEKPYRCNECGKAFSVRSSLTTHQ-AIHTGKKPYKCNECGKVFTQNAHLANHRRIHTGEKPYRCTECGKAFRVRSSLTTHMAI-HTGEKRYKCNECGKVFRQSSNLASH-HRMHTGEKPYK 818 The following BLAST results are available for this feature:
BLAST of TCONS_00057734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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