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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057657 ID=TCONS_00057657|Name=TCONS_00057657|organism=Clytia hemisphaerica|type=transcript|length=1062bp
ATCAACACTTGATCTCACTTAATTTAAGACATTAAATTGGCGTCAACAGA
GTCATTGATGAATGAAGTACGGGTCAGCAACCGATCTTCGAATCTGATGG
TCAATGGGGATGTCATGAAGATATCCAAAGATTGGATGAAAAACGCAGAT
GTCGTCAAAAGTCTTAGAAACCCAGgtTTTGCTGGAATACACGACATTGA
GAAGTATTTCAAGTCAAACAATTTGAAACTTGGTCAGAAACGAGTAGGGA
AAGCTTTCGTTGTTTTTGGGATTCCAACCGTCAAGAGAAGTAAAGCCTAT
TACGTCATCCAAACGGTATCCTCTTTGCTCAAACACATGAACAtttcaga
aaagaaaaatgcTGTCATCGTCATTTTTGTGGCAGATCTTGACGATAGTT
TTCTTAGGAAAGTCGTAAAAGATGTTCGACAGAACTTTACAGGCGAAGTT
AAAGACGGTATCATTCAAGTGGTCGCTCCTGATAAAGCCTACTATCCTaa
taatctgaataatttgCCAAGACTTTTTGGCGATGAAAAAAATCGAGTCC
GCTGGAGATCGAAGCAGTGCCTCGATTATTCATATTTGTATTATTACTGT
AAGGATATGGCGCAAAATTTTGTTCAACTTGAAGATGATATAATTGCTGT
TGATCATTATATGGGGAAAATGCGGGAATTTATAACGAAAAACGAGAAAC
GCAGTTGGTCGGTCCTTGAGTTCGGTGCCCGAGGATTTATCGGAATGACT
TATCGGGGTGAACATTTAGAATCGTTAGCAAAATTTGTCAGATATTTCTT
TTGGACCATGCCAGTTGATTTACTTTTTCGAGTTTATAATGATATCTACT
TGtataaaaatccaaagaatTTTCGCATAAAGAAACCTGTTTTCTTGCAT
GTCGGTAAATTCTCATCCTTGGATGGTCAAGTGAGAAAACTCGAGGATTT
ATAGGATATCCCGATAGTTGGTCGACGACAATTCCAATCGGTAAAAGGAA
ATCCCGTTGCCGAAATAGAATCGGATTTATCGGGATTCTATAAAAGCAAT
GTGTTAGAGAAC Run BLAST on NCBI transcript from alignment at scaffold_297:93114..99284+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057657 ID=TCONS_00057657|Name=TCONS_00057657|organism=Clytia hemisphaerica|type=transcript|length=6171bp|location=Sequence derived from alignment at scaffold_297:93114..99284+ (Clytia hemisphaerica)
ATCAACACTTGATCTCACTTAATTTAAGACATTAAATTGGCGTCAACAGA
GTCATTGATGAATGAAGTACGGGTCAGCAACCGATCTTCGAATCTGATGG
TCAATGGGGATGTCATGAAGATATCCAAAGATTGGATGAAAAACGCAGAT
GTCGTCAAAAGTCTTAGAAACCCAGGTCTAGTTCACTATAATTACTacta
tattttaaaattatcatgAAATGTCATTGAAAACAACCCtctgtcacaga
cccgctgggaccccagccctactggaaaatttgggaagAATTTCGtaccc
ggtgggaaaataccctagaatttcagccccactgggaaactgacttttat
ttcatccctattcaaaaaaattcagtatttcaaaattgcacttaaaaacc
atccccactaaattttttaaccttggaacaatagaatttctatacctatt
gggattttgatagaaattttgatTCCCGatgagaaaaaagttccaccggg
gctgttaGACAgggtatttgaaaatattaaagtgAAACCTTTCAAGTAAC
GAAGTCAACTTTTCAAGCGGTTGCTTTCCTGGCTATTACATAAACCTATC
ATCAATATTGTTGTTGATTTTTCGGAATAAAGGAGTCAACAAATGATCAT
ATTCATCTAAATCTGAGGTTCGGGACTTAAAAGTAAAATCCTTCTAGGTA
CACCTCCAAATGTAGATTGTAGACATATAAGACAAAACATTCTACTCAGG
ACCATATAGAAGGAATCCTAACTTGATAAATATTCAATACCTTAAACTAT
TTGATATTGTAACCTTCTAatatgattttcttttcttttcaaaaggtTTT
GCTGGAATACACGACATTGAGAAGTATTTCAAGTCAATCAATTTGAAACT
TGGTCAGAAACGAGTAGGGAAAGGTAAAATTATCTCCATACAAATATTTA
TCCAGTCACTTCAATCTTTCCCAAAGGCCAAACTTCAATGCAGGCAGCCT
ATCAAGGAAATGCACGGACGAATCCTTATGTATCCTATGAATTTCTATCT
TTCAGCTTTCGTTGTTTTTGGGATTCCAACCGTCAAGAGAAGTAAAGCTT
ATTACGTCATCCAAACGGTATCTTCCTTGCTCAAACacatgaaaatttca
gaaaggaAAAATGTTGTCATCGTCATTTTTGTGGCAGATCTTGACGATAA
TTTTCTTAGGAAAGTCGTAAAAGATGTTCGACAGANAATTGCACttaaaa
accatccccactaaattttttaaccttggaacaatagaatttctatacct
attgggattttgatagaaattttgatTCCCGatgagaaaaaagttccacc
ggggctgttaGACAgggtatttgaaaatattaaagtgAAACCTTTCAAGT
AACGAAGTCAACTTTTCAAGCGGTTGCTTTCCTGGCTATTACATAAACCT
ATCATCAATATTGTTGTTGATTTTTCGGAATAAAGGAGTCAACAAATGAT
CATATTCATCTAAATCTGAGGTTCGGGACTTAAAAGTAAAATCCTTCTAG
GTACACCTCCAAATGTAGATTGTAGACATATAAGACAAAACATTCTACTC
AGGACCATATAGAAGGAATCCTAACTTGATAAATATTCAATACCTTAAAC
TATTTGATATTGTAACCTTCTAatatgattttcttttcttttcaaaaggt
TTTGCTGGAATACACGACATTGAGAAGTATTTCAAGTCAATCAATTTGAA
ACTTGGTCAGAAACGAGTAGGGAAAGGTAAAATTATCTCCATACAAATAT
TTATCCAGTCACTTCAATCTTTCCCAAAGGCCAAACTTCAATGCAGGCAG
CCTATCAAGGAAATGCACGGACGAATCCTTATGTATCCTATGAATTTCTA
TCTTTCAGCTTTCGTTGTTTTTGGGATTCCAACCGTCAAGAGAAGTAAAG
CTTATTACGTCATCCAAACGGTATCTTCCTTGCTCAAACacatgaaaatt
tcagaaaggaAAAATGTTGTCATCGTCATTTTTGTGGCAGATCTTGACGA
TAATTTTCTTAGGAAAGTCGTAAAAGATGTTCGACAGGACTTTACAGGCG
AAGTTAAAGACGGTATCATTCAAGTGGTTGCTCCTGATAAAGCCTACTAT
CCTAAGAATCTGGATAATTTGCCAAGACTTTTTGGTGATGAACAAGATCG
AGTCCGCTGGAGATCGAAGCAGTGCCTCGATTATTCATATTTGTATTATT
ACTGTAAAGATATGGCGCAATATTTTGTTCAGCTTGAAGATGATATAATT
GCTGTTGATGATTATATGGGGAAAATGCGGGAATTTATAACGAAAAACGA
GAAACTTCGTTGGTCGGTCCTTGAGTTCGGTGCCCGAGGATTTATCGGAA
TGACTTATCGGGGAGAACATCTAGAATCGTTGGCAAAGTTTACCAGATAT
TTCTTTTGGACCATGCCAGTCGACTGGCTTTTTCGAGTTTATAACAATAt
ctttttatatcaaaatccTAAGAGCTTTCGTACAAGCGAACCTTTGTTCT
TACATATCGGAAAGTTCTCTTCCTTAGATGGCCAAACGAGGTCAAATCTT
ATAGATCTGCCACTGGTCGGGAGACGTCGATTTCAATTGAGAAACGGAAA
TCCACCAGCTATCATCAAGTCTGACTTGAAAGACTTTTATATGAAGAATT
TCTTAGAAAACCCATATTCCAAAAAAGGGGCGATGTGGAGTAAAACACCT
CACAATGGAGATACTATTACAATTATGTTTAATTCGactcaaaaagtcaa
aagaatTGTTTTCGTCAGTGGGTTAGAAGATTATAAAAAAGACAGCTTCT
ATGAAACTGAATTATACATCTCTCAAATGAGAGGTAATGCGAATTCGAAA
TGTGGGAAGTTTGAGCTGGTGAAATTTTACAAAGAAGCAATAGTTGATAT
TACTTTTGATGAACCTAAAGAAAACGTTTGGTGTGTCAAACTGGAGTTGA
CAACTGTCAAGAAAACGAAAGGAATTCCAAACTGGTTGATTATTGAAGAA
ATTGCTATTCTTATTAGTTGATTTACAATATTTATATACTAAGTGTATAA
CTACTATGTTTCGTCCTTTGGGCTTAGAATTCAATCTTATTACcctcccc
caccatccaaagggctttatTGTGCacatcataagccctttgggTAGTAA
AGGGGAAACTATAGACTGGTTTAATCccaaagaacgaaaaattgcCCTTT
AAGACCGATCAAAACTCGAAAAATCGCATATTtcatgttttgtgacgtca
tttgggcccTACATTACGTCATTGAAAGGGTAATAAATTCTttacttcac
tgaaatcaatttgtcatttaccCAAAAGATTCTCTCAATGACTTCCGATC
CAATGCGGGGTCAtccattgcttaaatccttctcaaactcgaaatattgt
atttttcaggttttgataACGTCATTGGACCCAAAATGTCTCAATTTGGA
TATATCATTTTTCgaaagtttctatatacccACTCTGACCCCTCCAATTT
ATTCTCTATTAAATTCTAGATCCAATGAGGgttcaacgacctcccaaccg
CTATTCAATCGCGCGATATCAcaattttcctgttttgatgacgtcttcaa
ctgaaaacgcctgaaaatttagtcaaattataaagtcacactcaagcctt
ataaaacCTCTCATcatattctccataaaattttcgatcaaatgaggggt
caccaacttgaatgaaaatatgaaatagaTCGCCGTATCTTTTGCCGaac
gaaaaatatatttttgggaaattttttcgtttcaaaatcttgaaaataat
ggttattgaccaatttttcattcgAGTATTTTCGTAAAAAGAATCATACC
TTTTGATACATCAATTAAGAAAATTGttccaaaatattttagatggtctt
tagaaaaaatttggaacaaaaaggttaattacccaatAAAACTAAGCACT
TATAGTAAAAGAGGGTACAAAATTTTTTAAGgttataacgtcatttttgt
aaattgttAATGACTCCTGATAGAACAAATTCAGAAACAAATTATATaga
caattttttgttaaaagtgtcaaggagctcaaaacaaaagttttgtcCTC
AAAACTCATAACCAGCTCATAACCGATCTCTTGaccatggtcagagccct
taaatgtgATTTCATTGTTCTTTGTTTCGAGGAATTTTCATTAAGAGCTT
TCATATGACCAAATATATTAATTGAATTGCATCAATCATCATTTTACTGT
GTCTTTAATGGAACAGATTAATTAGGCCTAGAAAATGCTTTGAAGAGTTT
TTGTTTTATGTAAGTGTAGTATTAGAAACATCAAATGAATTAGATGAGTC
ACTGATCggcttgtatttttgaagaaatctCTCATCGTCAAATGTTAAAG
CTGAATCTAAGATAACTGGATGTCATAAATCTTTCTCTTTAATGTGGTAA
AACAACCAGGCTATATAGTTGCGATGTGTCCagataaaaaagtgaaattc
gtGAAATTTTCATAACTTCATTGGGAATTATAGTTTTTTATCTACTCTAT
AAATCAAAGCAGAAAAATTTGTGgatgaagtaaagaaaatgtATAAGATG
TGGAATGCAATGTTAGACAGAGATCTTTGAAATAATTTAGCGTGGAACCG
TTCAAGTAACGAagtcaacttttcaaaaagtaaCTTTACAGTGGTTGCTT
TCTGGCTATTACATAAATCTATCATCAATATTGTTGTTGATTTCTCGGAA
TAAAAGAGTCAACAAATGATCATATTCATCTAAATCTGAGGTTCGGGACT
TACCAAGTAAAATCCTTCTAGGTACACCTCCAAATGTAGATTGTAGACAT
ATAAGACAAAAGATTTTACTCAGGACCATATAANTCAACAAATGATCATA
TTCATCTAAATCTGAGGTTCGGGACTTAAAAGTAAAATCCTTCTAGGTAC
ACCTCCAAATGTAGATTGTAGACATATAAGACAAAACATTCTACTCAGGA
CCATATAGAAGGAATCCTAACTTGATAAATATTCAATACCTTAAACTATT
TGATATTGTAACCTTCTAatatgattttcttttcttttcaaaaggtTTTG
CTGGAATACACGACATTGAGAAGTATTTCAAGTCAAACAATTTGAAACTT
GGTCAGAAACGAGTAGGGAAAGGTAAAATTATCTCCATACAAATATTTTT
CCAGCCACTTTAATCTTTCCCAAAAGCCAAATTTCAATGTAGGTAGTCTA
TCAGGGAAATGCACCAGACGAATTTTACTTCCTTATGTATCCTATGAGTT
TCCATCTTTCAGCTTTCGTTGTTTTTGGGATTCCAACCGTCAAGAGAAGT
AAAGCCTATTACGTCATCCAAACGGTATCCTCTTTGCTCAAACACATGAA
CAtttcagaaaagaaaaatgcTGTCATCGTCATTTTTGTGGCAGATCTTG
ACGATAGTTTTCTTAGGAAAGTCGTAAAAGATGTTCGACAGAACTTTACA
GGCGAAGTTAAAGACGGTATCATTCAAGTGGTCGCTCCTGATAAAGCCTA
CTATCCTaataatctgaataatttgCCAAGACTTTTTGGCGATGAAAAAA
ATCGAGTCCGCTGGAGATCGAAGCAGTGCCTCGATTATTCATATTTGTAT
TATTACTGTAAGGATATGGCGCAAAATTTTGTTCAACTTGAAGATGATAT
AATTGCTGTTGATCATTATATGGGGAAAATGCGGGAATTTATAACGAAAA
ACGAGAAACGCAGTTGGTCGGTCCTTGAGTTCGGTGCCCGAGGATTTATC
GGAATGACTTATCGGGGTGAACATTTAGAATCGTTAGCAAAATTTGTCAG
ATATTTCTTTTGGACCATGCCAGTTGATTTACTTTTTCGAGTTTATAATG
ATATCTACTTGtataaaaatccaaagaatTTTCGCATAAAGAAACCTGTT
TTCTTGCATGTCGGTAAATTCTCATCCTTGGATGGTCAAGTGAGAAAACT
CGAGGATTTATAGGATATCCCGATAGTTGGTCGACGACAATTCCAATCGG
TAAAAGGAAATCCCGTTGCCGAAATAGAATCGGATTTATCGGGATTCTAT
AAAAGCAATGTGTTAGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057657-exon-scaffold_297-1491911889:93114..93288 | TCONS_00057657-exon-scaffold_297-1491911889:93114..93288 | Clytia hemisphaerica | exon |
| TCONS_00057657-exon-scaffold_297-1510915933:93114..93288 | TCONS_00057657-exon-scaffold_297-1510915933:93114..93288 | Clytia hemisphaerica | exon |
| TCONS_00057657-exon-scaffold_297-1575043694:93114..93288 | TCONS_00057657-exon-scaffold_297-1575043694:93114..93288 | Clytia hemisphaerica | exon |
| TCONS_00057657-exon-scaffold_297-1491911889:98258..98335 | TCONS_00057657-exon-scaffold_297-1491911889:98258..98335 | Clytia hemisphaerica | exon |
| TCONS_00057657-exon-scaffold_297-1510915933:98258..98335 | TCONS_00057657-exon-scaffold_297-1510915933:98258..98335 | Clytia hemisphaerica | exon |
| TCONS_00057657-exon-scaffold_297-1575043694:98258..98335 | TCONS_00057657-exon-scaffold_297-1575043694:98258..98335 | Clytia hemisphaerica | exon |
| TCONS_00057657-exon-scaffold_297-1491911889:98476..99284 | TCONS_00057657-exon-scaffold_297-1491911889:98476..99284 | Clytia hemisphaerica | exon |
| TCONS_00057657-exon-scaffold_297-1510915933:98476..99284 | TCONS_00057657-exon-scaffold_297-1510915933:98476..99284 | Clytia hemisphaerica | exon |
| TCONS_00057657-exon-scaffold_297-1575043694:98476..99284 | TCONS_00057657-exon-scaffold_297-1575043694:98476..99284 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_297 | supercontig | scaffold_297:93114..99284 + |
Blast
BLAST of TCONS_00057657 vs. Swiss-Prot (Human)
Match: MGT4B (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B OS=Homo sapiens GN=MGAT4B PE=1 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 6.605e-44 Identity = 95/284 (33.45%), Postives = 157/284 (55.28%), Query Frame = 1
Query: 223 LKLGQKRVGKAFVVFGIPTVKRSKAYYVIQTVSSLLKHMNISEKKNAVIVIFVADLDDSFLRKVVKDVRQNFTGEVKDGIIQVVAPDKAXXXXXXXXXXRLFGDEKNRVRWRSKQCLDYSYLYYYCKDMAQNFVQLEDDIIAVDHYMGKMREFITKNEKRSWSVLEFGARGFIGMTYRGEHLESLAKFVRYFFWTMPVDLLF------RVYND----IYLYKNPKNFRIK-KP-VFLHVGKFSSLDGQVRKLEDL*DIPIVGRRQFQSVKGNPVAEIESDLSGF 1038
+++GQ R G + VV GIP+V+R Y+ T+ SL+ ++ EK+++VIV+ +A+ D + V ++++ F E+ G+++V++P +YP+ FGD K RVRWR+KQ LDY +L Y + +VQLEDDI+A +Y+ M+ F + W +LEF GFIG ++ L + +F+ F+ P+D L +V N + + N RI+ KP +F HVG SSL G+++KL+D G++ + NP AE+ + L +
Sbjct: 133 VRVGQGRTGVS-VVMGIPSVRREVHSYLTDTLHSLISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLLEVISPSPHFYPDFSRLRES-FGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFYRDKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKD----KDFGKQALRKEHVNPPAEVSTSLKTY 410
The following BLAST results are available for this feature:
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