TCONS_00057651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057651
Unique NameTCONS_00057651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length954

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057651 ID=TCONS_00057651|Name=TCONS_00057651|organism=Clytia hemisphaerica|type=transcript|length=954bp
CTTTACCAAACCTTGtgtcaaatgaaaaataaaaggaGATAGTGTTCATC
TTTACCAATTCCAAATTACGTCATATTTCTAAAGCCTTATGAATGGGCGC
TTGACAAAAAAAGACATTTGCCATTGTTGAACTTTGGTCATCCCTAAGCC
AATTTTCTCATGGTATCAGGATTGTTATAACAAGTGTGTAATATTACTTt
cgtactttttattttttaggagATTACAGTATTCACACAATCAAGGCAGA
TGGGGACTGTGGTTTCACGTACAGTAGTGTCAATCACTGTTGTCACTTCA
TCATTCTTAATTCCAAAACCTGAGCCTTACAAACCAGAAACAGCAGGTGA
GCTGAAGGCTTACGATCCACCCAGATATAAACTCATCAAAGGTCCAGACA
ATTCTATGGCTACAAATGTAATCCCACCAAATTATCAAGAAGGCTGGCAA
CAATCTCTAGTCAATAGAGACCTCCCAGAAGTAACTGAAATACAAATATT
AGAAGAAATCGATTAATCAAGCCAAACTGAATGAGTATCACATTGGATCT
AAAACTTCAAGCTAGCGCTTTTGGACCAAATGCTTTCGAAGTTTCCAGAA
AGTTAAGTTTAAATCAGCCATTCCATAAAGTAATAAGAAAagacaaaaag
ttttattttattttcagcaaaagcttttcggtaAAACCATCTTCAGTGCT
AGATGTTTAGAAAGAAGGTATTCAGATTCGGAAAGTATTCGATTCGGAAA
TGGCTTTTATAACATCTTTTATATAATTATACATAAGGACACAcaacaat
ataaaaaaaataaaaataaaatacaaacaggAAGAGATAGAGAGAAGAAT
TGTACAGATCTTATAAATTTTATACCATCTGAGAATTTTGTATACGAAAT
CTTTATGAAAAGAAGTATTATGTAAAATTTGtagcttttgtaaaaaatta
tttc
Run BLAST on NCBI

transcript from alignment at scaffold_297:81304..82516+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057651 ID=TCONS_00057651|Name=TCONS_00057651|organism=Clytia hemisphaerica|type=transcript|length=1213bp|location=Sequence derived from alignment at scaffold_297:81304..82516+ (Clytia hemisphaerica)
CTTTACCAAACCTTGtgtcaaatgaaaaataaaaggaGATAGTGTTCATC
TTTACCAATTCCAAATTACGTCATATTTCTAAAGCCTTATGAATGGGCGC
TTGACAAAAAAAGACATTTGCCATTGTTGAACTTTGGTCATCCCTAAGCC
AATTTTCTCATGGTATCAGGATTGTTATAACAAGTGTGTAATATTACTTt
cgtactttttattttttaggagATTACAGTATTCACACAATCAAGGCAGA
TGGGGACTGTGGTTTCACGTACAGTAGTGTCAATCACTGTTGTCACTTCA
TCATTCTTAATTCCAAAACCTGAGCCTTACAAACCAGAAACAGCAGGTAC
CTCTTCAAATTGTATTTCCTAATAAATTTTTTCTAACCCTTATATAAATT
GGGtctatgaaaaaaatgaatgtgaaaaatggatttttagttaaaaagtt
gatttttttcaaatagtaCATTTTCCTCGACAGCTCCTTTGACTTTAACA
GCTAAAAAACAATCCCACCTTTCTGTAGATCAGAagagatttaaaaaata
atttgatgattTAATGTGAAGTATGAAGAAgttcttttgtattttcataA
TATAGGTGAGCTGAAGGCTTACGATCCACCCAGATATAAACTCATCAAAG
GTCCAGACAATTCTATGGCTACAAATGTAATCCCACCAAATTATCAAGAA
GGCTGGCAACAATCTCTAGTCAATAGAGACCTCCCAGAAGTAACTGAAAT
ACAAATATTAGAAGAAATCGATTAATCAAGCCAAACTGAATGAGTATCAC
ATTGGATCTAAAACTTCAAGCTAGCGCTTTTGGACCAAATGCTTTCGAAG
TTTCCAGAAAGTTAAGTTTAAATCAGCCATTCCATAAAGTAATAAGAAAa
gacaaaaagttttattttattttcagcaaaagcttttcggtaAAACCATC
TTCAGTGCTAGATGTTTAGAAAGAAGGTATTCAGATTCGGAAAGTATTCG
ATTCGGAAATGGCTTTTATAACATCTTTTATATAATTATACATAAGGACA
CAcaacaatataaaaaaaataaaaataaaatacaaacaggAAGAGATAGA
GAGAAGAATTGTACAGATCTTATAAATTTTATACCATCTGAGAATTTTGT
ATACGAAATCTTTATGAAAAGAAGTATTATGTAAAATTTGtagcttttgt
aaaaaattatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036365XLOC_036365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057651-exon-scaffold_297-1491911889:81304..81649TCONS_00057651-exon-scaffold_297-1491911889:81304..81649Clytia hemisphaericaexon
TCONS_00057651-exon-scaffold_297-1510915933:81304..81649TCONS_00057651-exon-scaffold_297-1510915933:81304..81649Clytia hemisphaericaexon
TCONS_00057651-exon-scaffold_297-1575043694:81304..81649TCONS_00057651-exon-scaffold_297-1575043694:81304..81649Clytia hemisphaericaexon
TCONS_00057651-exon-scaffold_297-1491911889:81909..82516TCONS_00057651-exon-scaffold_297-1491911889:81909..82516Clytia hemisphaericaexon
TCONS_00057651-exon-scaffold_297-1510915933:81909..82516TCONS_00057651-exon-scaffold_297-1510915933:81909..82516Clytia hemisphaericaexon
TCONS_00057651-exon-scaffold_297-1575043694:81909..82516TCONS_00057651-exon-scaffold_297-1575043694:81909..82516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:81304..82516 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.211006	0	0	0	0	0	0.198827	0	0	1.06445	0.481876	0	0	0	0	0.856797	0.607048	0.638228	0	0	0	0.906926	0	0	0	0.468147	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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