TCONS_00057641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057641
Unique NameTCONS_00057641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057641 ID=TCONS_00057641|Name=TCONS_00057641|organism=Clytia hemisphaerica|type=transcript|length=814bp
AGTTCTGGACAGTCCAGTGCATTTACATGGTCATGGTCTTTTTTCATCTA
GAAATTGAGTATAAGGTAATTGCCATTTTTTTAGACCCCAACTTTGGACC
TCTTGTTAAGGGGTCTATTGATGATGTAAAGAGCATTGAGCAGTTTGGAT
ATGAACTTAAAGTTAATGTTATAAGAAAGAGAAAGCTGtcttaacttaaa
ttttgagctgtttcttttcaaatttggtTTAGTAGTTTTTGAGTAGTCGA
TTTTGAAAATAAGATTCCACTTTTTAAAATGAGTGAAAGTGGTTGAAAAA
AGGGTGATCTAAATTAACAAGGAGAAAGAGATGAAACTAAAATAGACATG
TCTTAATAATGATTGTACTGgcacattttttttatcatttttggatCTAC
CTTGAGGTAGTCCTATATATTAACTCTtgctgtccgtccgtccgttcatT
ACCAGCCTTTCTTGAGAATGTctcatttagttttttctgattttttgcac
aatgNAATCATTTTTGGATCTACCTTGAGGTAGTCCTATATATTAACTCT
tgctgtccgtccgtccgttcatTACCAGCCTTTCTTGAGAACGTctcatt
tagttttttctgattttttgcacaatgatgcaaaatgataatgcccaaaa
tgtgatggagctcGATTTTTCTAGATAAATCATGCGATCCTTCCCCCCCC
CCAGGAAGATCAACTTTTGTCCTGGAGGGAGAAGTGAATATTGTCCTTGA
TAAGGGGGACTAATTTCAGGATACTTTATGGGAAGTGGGATAGAAATTCC
TGAAGATGGATATA
Run BLAST on NCBI

transcript from alignment at scaffold_295:36695..37508

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057641 ID=TCONS_00057641|Name=TCONS_00057641|organism=Clytia hemisphaerica|type=transcript|length=814bp|location=Sequence derived from alignment at scaffold_295:36695..37508 (Clytia hemisphaerica)
TATATCCATCTTCAGGAATTTCTATCCCACTTCCCATAAAGTATCCTGAA
ATTAGTCCCCCTTATCAAGGACAATATTCACTTCTCCCTCCAGGACAAAA
GTTGATCTTCCTGGGGGGGGGGAAGGATCGCATGATTTATCTAGAAAAAT
Cgagctccatcacattttgggcattatcattttgcatcattgtgcaaaaa
atcagaaaaaactaaatgagACGTTCTCAAGAAAGGCTGGTAatgaacgg
acggacggacagcaAGAGTTAATATATAGGACTACCTCAAGGTAGATCCA
AAAATGATTNcattgtgcaaaaaatcagaaaaaactaaatgagACATTCT
CAAGAAAGGCTGGTAatgaacggacggacggacagcaAGAGTTAATATAT
AGGACTACCTCAAGGTAGatccaaaaatgataaaaaaaatgtgcCAGTAC
AATCATTATTAAGACATGTCTATTTTAGTTTCATCTCTTTCTCCTTGTTA
ATTTAGATCACCCTTTTTTCAACCACTTTCACTCATTTTAAAAAGTGGAA
TCTTATTTTCAAAATCGACTACTCAAAAACTACTAAaccaaatttgaaaa
gaaacagctcaaaatttaagttaagaCAGCTTTCTCTTTCTTATAACATT
AACTTTAAGTTCATATCCAAACTGCTCAATGCTCTTTACATCATCAATAG
ACCCCTTAACAAGAGGTCCAAAGTTGGGGTCTAAAAAAATGGCAATTACC
TTATACTCAATTTCTAGATGAAAAAAGACCATGACCATGTAAATGCACTG
GACTGTCCAGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036356XLOC_036356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057641-exon-scaffold_295-1491911889:36695..37508TCONS_00057641-exon-scaffold_295-1491911889:36695..37508Clytia hemisphaericaexon
TCONS_00057641-exon-scaffold_295-1510915933:36695..37508TCONS_00057641-exon-scaffold_295-1510915933:36695..37508Clytia hemisphaericaexon
TCONS_00057641-exon-scaffold_295-1575043694:36695..37508TCONS_00057641-exon-scaffold_295-1575043694:36695..37508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_295supercontigscaffold_295:36695..37508 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0588505	0	0.332279	0.133629	0.161527	0	0.0754552	0	0.0494787	0.123275	0	0	0.0780203	0	0.0673651	0	0.308229	0.136008	0	0.0652706	0.170092	0.166064	0.0672365	0.061162	0	0.0577199	0.080679	0	0.0666774	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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