TCONS_00057593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057593
Unique NameTCONS_00057593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057593 ID=TCONS_00057593|Name=TCONS_00057593|organism=Clytia hemisphaerica|type=transcript|length=264bp
tcatcctAAAATTACTGCCCACATAACGCAAAACCATCCGTAGATCAAAC
GTCCTCAATGTCATCATTTAGATTTCTTCGCCTGAACAAATAGTACCAAA
AGGATTTACAAAATTGAAACATCTAATTATAAAAAAggcaaaagaagaag
aaattttgagATGTACCTTGCTCTATACTTCAAAATATCACGAATTAACA
GACCCAATATCAATAGCACAGTGCACGCCACATGAAGATACAATATCAAT
TTCCAACAAATATG
Run BLAST on NCBI

transcript from alignment at scaffold_293:168566..168829

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057593 ID=TCONS_00057593|Name=TCONS_00057593|organism=Clytia hemisphaerica|type=transcript|length=264bp|location=Sequence derived from alignment at scaffold_293:168566..168829 (Clytia hemisphaerica)
CATATTTGTTGGAAATTGATATTGTATCTTCATGTGGCGTGCACTGTGCT
ATTGATATTGGGTCTGTTAATTCGTGATATTTTGAAGTATAGAGCAAGGT
ACATctcaaaatttcttcttcttttgccTTTTTTATAATTAGATGTTTCA
ATTTTGTAAATCCTTTTGGTACTATTTGTTCAGGCGAAGAAATCTAAATG
ATGACATTGAGGACGTTTGATCTACGGATGGTTTTGCGTTATGTGGGCAG
TAATTTTaggatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036319XLOC_036319Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057593-exon-scaffold_293-1491911889:168566..168829TCONS_00057593-exon-scaffold_293-1491911889:168566..168829Clytia hemisphaericaexon
TCONS_00057593-exon-scaffold_293-1510915933:168566..168829TCONS_00057593-exon-scaffold_293-1510915933:168566..168829Clytia hemisphaericaexon
TCONS_00057593-exon-scaffold_293-1575043694:168566..168829TCONS_00057593-exon-scaffold_293-1575043694:168566..168829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:168566..168829 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23658	1.20586	1.40012	0	0	0	0	0	0	0	0	0	0	0	0.351086	0	0.928297	0	0	0	0.597798	0	1.41784	1.28902	0	1.18491	0	0	1.37251	2.09755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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