TCONS_00057588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057588
Unique NameTCONS_00057588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057588 ID=TCONS_00057588|Name=TCONS_00057588|organism=Clytia hemisphaerica|type=transcript|length=507bp
ATTTGAataaattagtcattccattaGAAATTGTAGAGTGTGACATCTTT
TCTCTAACGCTGCTCAATAGAAACAAATATCTCTCGTTGAGTGGAAGGCC
GGCATCGTTGGTGCTAGCTATCTTTGGTCGGAAGTGAACAGCAAATTTGT
TCAAATGTGAGAAAATCATTTCGGAGCAGACAATTGCCTTCTTTCCATAA
AGCAGGTTTTATATTTAGTGCTTGATATCACCATTGCATCGTATTCATTA
TCGTGTACAGCATTTTGCAAATCAGctattgaaatgctaatgagGTTGGA
TGCCCTCAAGGCATTTGTTATGCAAAGCATAAACATCAGGTAGTTTTGAC
AATCTATGGCTTGTTCTGACATATACTTCGGAGATGTGAAGTGATCAATA
CCATTGATAAAATCATTAATAAAATCTCTTTTTGCCCTGTCACTATTGCC
AAAGATCTTGCAATCAGTGTTCGTTATCAAATTCTCCAATTTAGAATCTT
ACATTGC
Run BLAST on NCBI

transcript from alignment at scaffold_293:145981..146487

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057588 ID=TCONS_00057588|Name=TCONS_00057588|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at scaffold_293:145981..146487 (Clytia hemisphaerica)
GCAATGTAAGATTCTAAATTGGAGAATTTGATAACGAACACTGATTGCAA
GATCTTTGGCAATAGTGACAGGGCAAAAAGAGATTTTATTAATGATTTTA
TCAATGGTATTGATCACTTCACATCTCCGAAGTATATGTCAGAACAAGCC
ATAGATTGTCAAAACTACCTGATGTTTATGCTTTGCATAACAAATGCCTT
GAGGGCATCCAACctcattagcatttcaatagCTGATTTGCAAAATGCTG
TACACGATAATGAATACGATGCAATGGTGATATCAAGCACTAAATATAAA
ACCTGCTTTATGGAAAGAAGGCAATTGTCTGCTCCGAAATGATTTTCTCA
CATTTGAACAAATTTGCTGTTCACTTCCGACCAAAGATAGCTAGCACCAA
CGATGCCGGCCTTCCACTCAACGAGAGATATTTGTTTCTATTGAGCAGCG
TTAGAGAAAAGATGTCACACTCTACAATTTCtaatggaatgactaattta
tTCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036314XLOC_036314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057588-exon-scaffold_293-1491911889:145981..146487TCONS_00057588-exon-scaffold_293-1491911889:145981..146487Clytia hemisphaericaexon
TCONS_00057588-exon-scaffold_293-1510915933:145981..146487TCONS_00057588-exon-scaffold_293-1510915933:145981..146487Clytia hemisphaericaexon
TCONS_00057588-exon-scaffold_293-1575043694:145981..146487TCONS_00057588-exon-scaffold_293-1575043694:145981..146487Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:145981..146487 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.40495	4.29552	0.808786	0.527514	0.160549	0	0	0	0.300971	0	0	0.396443	0.395891	0	0.0676021	0	0.0893725	0.366416	0.379667	0.264863	0.115107	0	1.91105	2.97844	0.255643	1.25486	0.163245	0	1.98209	1.75018
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top