TCONS_00057558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057558
Unique NameTCONS_00057558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057558 ID=TCONS_00057558|Name=TCONS_00057558|organism=Clytia hemisphaerica|type=transcript|length=489bp
AGAAGCTCAATTCTTTGTTGACATGTTGTCAGTCAGAGTCAAACTTAAAC
TTTATTAAATTGGTAAATGGAATCTGCTGAATTGAATATTTAATAATAAT
TTGCATTTCACTGTGGATTTACCCAGCTGGTAATCCACTCATTTCACTGG
TCATTTTCACAGCAATcactttttgttgttgtttcaaCTCCAGTGTGTTG
GCAAATGGAATGGTTCCAGTGAATGTCGAGAGCGATACTGAAAGCGATAG
GTGAGTGATTGCTGAGTACAGGTACGCAGAAGGTATCGTTTGAGAGGTCT
TTCATTGTTGAGGTGAATTTTCCAATGATTGATACTTCATCTGATGGAAG
AATTCTACCAGTATAATGTAGAATACCATTCTTTTCTTGAGTGATCTTGT
CGAATTTCTTTGGCTGAATGAATTGAAGTACTTCTCTTGTCCCAATTCTG
AAGAAATATTGCTCTGAATCCTTAATTTCCTCATCTGAC
Run BLAST on NCBI

protein sequence of TCONS_00057558-protein

>TCONS_00057558-protein ID=TCONS_00057558-protein|Name=TCONS_00057558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
SDEEIKDSEQYFFRIGTREVLQFIQPKKFDKITQEKNGILHYTGRILPSD
EVSIIGKFTSTMKDLSNDTFCVPVLSNHSPIAFSIALDIHWNHSICQHTG
VETTTKSDCCENDQ
Run BLAST on NCBI

transcript from alignment at scaffold_292:128734..129222

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057558 ID=TCONS_00057558|Name=TCONS_00057558|organism=Clytia hemisphaerica|type=transcript|length=489bp|location=Sequence derived from alignment at scaffold_292:128734..129222 (Clytia hemisphaerica)
GTCAGATGAGGAAATTAAGGATTCAGAGCAATATTTCTTCAGAATTGGGA
CAAGAGAAGTACTTCAATTCATTCAGCCAAAGAAATTCGACAAGATCACT
CAAGAAAAGAATGGTATTCTACATTATACTGGTAGAATTCTTCCATCAGA
TGAAGTATCAATCATTGGAAAATTCACCTCAACAATGAAAGACCTCTCAA
ACGATACCTTCTGCGTACCTGTACTCAGCAATCACTCACCTATCGCTTTC
AGTATCGCTCTCGACATTCACTGGAACCATTCCATTTGCCAACACACTGG
AGttgaaacaacaacaaaaagtgATTGCTGTGAAAATGACCAGTGAAATG
AGTGGATTACCAGCTGGGTAAATCCACAGTGAAATGCAAATTATTATTAA
ATATTCAATTCAGCAGATTCCATTTACCAATTTAATAAAGTTTAAGTTTG
ACTCTGACTGACAACATGTCAACAAAGAATTGAGCTTCT

Coding sequence (CDS) from alignment at scaffold_292:128734..129222

>TCONS_00057558 ID=TCONS_00057558|Name=TCONS_00057558|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_292:128734..129222 (Clytia hemisphaerica)
TCAGATGAGGAAATTAAGGATTCAGAGCAATATTTCTTCAGAATTGGGAC
AAGAGAAGTACTTCAATTCATTCAGCCAAAGAAATTCGACAAGATCACTC
AAGAAAAGAATGGTATTCTACATTATACTGGTAGAATTCTTCCATCAGAT
GAAGTATCAATCATTGGAAAATTCACCTCAACAATGAAAGACCTCTCAAA
CGATACCTTCTGCGTACCTGTACTCAGCAATCACTCACCTATCGCTTTCA
GTATCGCTCTCGACATTCACTGGAACCATTCCATTTGCCAACACACTGGA
GttgaaacaacaacaaaaagtgATTGCTGTGAAAATGACCAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036295XLOC_036295Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057558-proteinTCONS_00057558-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057558-exon-scaffold_292-1491911889:128734..129222TCONS_00057558-exon-scaffold_292-1491911889:128734..129222Clytia hemisphaericaexon
TCONS_00057558-exon-scaffold_292-1510915933:128734..129222TCONS_00057558-exon-scaffold_292-1510915933:128734..129222Clytia hemisphaericaexon
TCONS_00057558-exon-scaffold_292-1575043694:128734..129222TCONS_00057558-exon-scaffold_292-1575043694:128734..129222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_292supercontigscaffold_292:128734..129222 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.831482	0.475928	0.430505	0	0.271215	0.270048	0.189536	0.209849	2.64334	3.32294	4.25009	2.82361	0.12865	0	0.273912	0.341985	0.190236	0.0681587	0.244723	0	0.0747036	0	0.135542	0	0	0.14786	0	0	0.0844824	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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