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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057556 ID=TCONS_00057556|Name=TCONS_00057556|organism=Clytia hemisphaerica|type=transcript|length=1257bp
NNGTGGTCTTTCTCCAGTTCTCTCTTGGTGTACTCTCGATGGACAGCAGT
ATTGAAGTCGAGTTTTTTCGAGTTGAGCTTGATGAGAAGTGCACCCATAT
TCATGATGGTTTCTGAAGCATCACTATCGGTGATTGGTGATTGAAGAAGT
TTCTCGTACTTGATGGATAACCTGTCAAGATTGTCGGAGAGTTTGGATTA
TTCGTCCTTGAGTTGGGTAAGTTGTTTATCGTCCAACTTTTGAAGATCTT
GAGTGATAGTTGAATTGATTTCGAAAGACTTTGTTGCATAACCTCGATAC
TGAATGCAATAGATTTCTCATTACTGATAGTTGTTTGTGATGTCACTTGG
GTATTGGCGAGATTTAGTTTGGATTTGTGATATCGAGCTGATATATTGTA
CGTCTTGATTGATGTTTCTGCTCTCAGGGCTGATAGAATGAGGTCATCTT
GATCATCCAAGTTCGATTCTATGCACAGGAGTCTCAGCTCATCTCGTCTT
GAATTCATTTGTGAAATAGTTGGATCGACTTCAGTGGCAGTCAAACCATT
GATTGTTGTCTCATCGATTGCATCATTAATAGCTGCAATTAggagttttg
attattttgattttattgatggTGCTTTCATTTGTCGAAGGCATGATGGT
TTCACGAAGTGAAAGATTTGAAAGTTGACTGGAAAGATGGTCCTCGACGT
GGATACTCCGACCAGAGTTGTGAAGTTCCTTATGGTTTATACGAGGAAGA
TTTCTCTTTGATATAAATGTTTGGCTGAATTGATGAAGTTGATTGAGTTG
AGTGTGATTGGAGGGTGTGGCTCCGTTTGAATGTGGAGCCACACTTCCAC
CATCACAGTAGAGCTTCTTCGGATATCCATGGTCGCAAGCAAATCGAGTG
AATGATAATATGAACGAATCAGTAGAATAACCGTCCATCACTTTAATAGA
TATAGCTGAGGTTGCAGAACAGCAGATAACAGCAAGCCAAATCTTCACAG
TTGTGCGCTTGTGACTAGGTGAAGAGGATAAATATGGACTGGACAGATCA
ACTTGTGATGCATAGAAGGCTCGTGCAACTGTTAGATTTGATTCTGATAT
GGGCCCCATGACAACTTCAACTGATTTCTTCATTAGGAAACGACATCTTT
GACAGTTTTTACGAATGACCTTGATCATGGACCGATATTCGATAATGTAG
GCTTTCTTTAGAAGATATCGAATTGTTGTTTCAACTCCAGTGTGTTGGCA
AATGGAA Run BLAST on NCBI protein sequence of TCONS_00057556-protein >TCONS_00057556-protein ID=TCONS_00057556-protein|Name=TCONS_00057556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
SICQHTGVETTIRYLLKKAYIIEYRSMIKVIRKNCQRCRFLMKKSVEVVM
GPISESNLTVARAFYASQVDLSSPYLSSSPSHKRTTVKIWLAVICCSATS
AISIKVMDGYSTDSFILSFTRFACDHGYPKKLYCDGGSVAPHSNGATPSN
HTQLNQLHQFSQTFISKRNLPRINHKELHNSGRSIHVEDHLSSQLSNLSL
RETIMPSTNESTINKIKIIKTPNCSY Run BLAST on NCBI transcript from alignment at scaffold_292:123835..125091 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057556 ID=TCONS_00057556|Name=TCONS_00057556|organism=Clytia hemisphaerica|type=transcript|length=1257bp|location=Sequence derived from alignment at scaffold_292:123835..125091 (Clytia hemisphaerica)
TTCCATTTGCCAACACACTGGAGTTGAAACAACAATTCGATATCTTCTAA
AGAAAGCCTACATTATCGAATATCGGTCCATGATCAAGGTCATTCGTAAA
AACTGTCAAAGATGTCGTTTCCTAATGAAGAAATCAGTTGAAGTTGTCAT
GGGGCCCATATCAGAATCAAATCTAACAGTTGCACGAGCCTTCTATGCAT
CACAAGTTGATCTGTCCAGTCCATATTTATCCTCTTCACCTAGTCACAAG
CGCACAACTGTGAAGATTTGGCTTGCTGTTATCTGCTGTTCTGCAACCTC
AGCTATATCTATTAAAGTGATGGACGGTTATTCTACTGATTCGTTCATAT
TATCATTCACTCGATTTGCTTGCGACCATGGATATCCGAAGAAGCTCTAC
TGTGATGGTGGAAGTGTGGCTCCACATTCAAACGGAGCCACACCCTCCAA
TCACACTCAACTCAATCAACTTCATCAATTCAGCCAAACATTTATATCAA
AGAGAAATCTTCCTCGTATAAACCATAAGGAACTTCACAACTCTGGTCGG
AGTATCCACGTCGAGGACCATCTTTCCAGTCAACTTTCAAATCTTTCACT
TCGTGAAACCATCATGCCTTCGACAAATGAAAGCAccatcaataaaatca
aaataatcaaaactccTAATTGCAGCTATTAATGATGCAATCGATGAGAC
AACAATCAATGGTTTGACTGCCACTGAAGTCGATCCAACTATTTCACAAA
TGAATTCAAGACGAGATGAGCTGAGACTCCTGTGCATAGAATCGAACTTG
GATGATCAAGATGACCTCATTCTATCAGCCCTGAGAGCAGAAACATCAAT
CAAGACGTACAATATATCAGCTCGATATCACAAATCCAAACTAAATCTCG
CCAATACCCAAGTGACATCACAAACAACTATCAGTAATGAGAAATCTATT
GCATTCAGTATCGAGGTTATGCAACAAAGTCTTTCGAAATCAATTCAACT
ATCACTCAAGATCTTCAAAAGTTGGACGATAAACAACTTACCCAACTCAA
GGACGAATAATCCAAACTCTCCGACAATCTTGACAGGTTATCCATCAAGT
ACGAGAAACTTCTTCAATCACCAATCACCGATAGTGATGCTTCAGAAACC
ATCATGAATATGGGTGCACTTCTCATCAAGCTCAACTCGAAAAAACTCGA
CTTCAATACTGCTGTCCATCGAGAGTACACCAAGAGAGAACTGGAGAAAG
ACCACNN Coding sequence (CDS) from alignment at scaffold_292:123835..125091 >TCONS_00057556 ID=TCONS_00057556|Name=TCONS_00057556|organism=Clytia hemisphaerica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_292:123835..125091 (Clytia hemisphaerica)
TCCATTTGCCAACACACTGGAGTTGAAACAACAATTCGATATCTTCTAAA
GAAAGCCTACATTATCGAATATCGGTCCATGATCAAGGTCATTCGTAAAA
ACTGTCAAAGATGTCGTTTCCTAATGAAGAAATCAGTTGAAGTTGTCATG
GGGCCCATATCAGAATCAAATCTAACAGTTGCACGAGCCTTCTATGCATC
ACAAGTTGATCTGTCCAGTCCATATTTATCCTCTTCACCTAGTCACAAGC
GCACAACTGTGAAGATTTGGCTTGCTGTTATCTGCTGTTCTGCAACCTCA
GCTATATCTATTAAAGTGATGGACGGTTATTCTACTGATTCGTTCATATT
ATCATTCACTCGATTTGCTTGCGACCATGGATATCCGAAGAAGCTCTACT
GTGATGGTGGAAGTGTGGCTCCACATTCAAACGGAGCCACACCCTCCAAT
CACACTCAACTCAATCAACTTCATCAATTCAGCCAAACATTTATATCAAA
GAGAAATCTTCCTCGTATAAACCATAAGGAACTTCACAACTCTGGTCGGA
GTATCCACGTCGAGGACCATCTTTCCAGTCAACTTTCAAATCTTTCACTT
CGTGAAACCATCATGCCTTCGACAAATGAAAGCAccatcaataaaatcaa
aataatcaaaactccTAATTGCAGCTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057556-exon-scaffold_292-1491911889:123835..125091 | TCONS_00057556-exon-scaffold_292-1491911889:123835..125091 | Clytia hemisphaerica | exon |
| TCONS_00057556-exon-scaffold_292-1510915933:123835..125091 | TCONS_00057556-exon-scaffold_292-1510915933:123835..125091 | Clytia hemisphaerica | exon |
| TCONS_00057556-exon-scaffold_292-1575043694:123835..125091 | TCONS_00057556-exon-scaffold_292-1575043694:123835..125091 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_292 | supercontig | scaffold_292:123835..125091 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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