TCONS_00057554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057554
Unique NameTCONS_00057554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057554 ID=TCONS_00057554|Name=TCONS_00057554|organism=Clytia hemisphaerica|type=transcript|length=584bp
AGTTTGTACGCTATGAAAAAGACCGTCGCCGCGGTATTATTTCACTCCAC
TGCAGACCCAGACCCCGAGAAacgtcatcggttttgcccTCGCACAAAGG
GCTCCTGGTGTAAATACAAGAGTGACAAAATCACTGGTGAGAAAACCTAC
AAAGGTAAACTCAATATTGACAAAACAGTCTCAGATGTAATTGCTGatgt
attttcaaataaagatttggGAAATGAAGAACTTTTGAAGAAGTGTTTGC
ACGGTCAAACTCAGAACGTTAACGAGTCGTTGAACAATTTGATTTGGACA
AGGTGTCCGAAAAGGATTTATGTTGGCAACACAACCTTTAAAACAGCAGT
TGCCTCAGCAGTGATTANGGATTCGGACAAGGTGTCCGAAAAGGATTTAT
GTTGGTAACACAACCTTTAAAACAGCAGTTGCCTCAGCAGTGATTAGTTT
TAATGAAGGTGAATATGGACTCATTTCTGTTTTTACAAACTTGGAATCGA
ACCAGGTGTTCTTCATTCTATCTAGCATGTGGTGAATTGAACACTTTTTT
GATTAAGGTCCTACTTTTTTACCAACTGACTCTA
Run BLAST on NCBI

protein sequence of TCONS_00057554-protein

>TCONS_00057554-protein ID=TCONS_00057554-protein|Name=TCONS_00057554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
SLYAMKKTVAAVLFHSTADPDPEKRHRFCPRTKGSWCKYKSDKITGEKTY
KGKLNIDKTVSDVIADVFSNKDLGNEELLKKCLHGQTQNVNESLNNLIWT
RCPKRIYVGNTTFKTAVASAVIXDSDKVSEKDLCW
Run BLAST on NCBI

transcript from alignment at scaffold_292:101305..101888

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057554 ID=TCONS_00057554|Name=TCONS_00057554|organism=Clytia hemisphaerica|type=transcript|length=584bp|location=Sequence derived from alignment at scaffold_292:101305..101888 (Clytia hemisphaerica)
TAGAGTCAGTTGGTAAAAAAGTAGGACCTTAATCAAAAAAGTGTTCAATT
CACCACATGCTAGATAGAATGAAGAACACCTGGTTCGATTCCAAGTTTGT
AAAAACAGAAATGAGTCCATATTCACCTTCATTAAAACTAATCACTGCTG
AGGCAACTGCTGTTTTAAAGGTTGTGTTACCAACATAAATCCTTTTCGGA
CACCTTGTCCGAATCCNTAATCACTGCTGAGGCAACTGCTGTTTTAAAGG
TTGTGTTGCCAACATAAATCCTTTTCGGACACCTTGTCCAAATCAAATTG
TTCAACGACTCGTTAACGTTCTGAGTTTGACCGTGCAAACACTTCTTCAA
AAGTTCTTCATTTCccaaatctttatttgaaaatacatCAGCAATTACAT
CTGAGACTGTTTTGTCAATATTGAGTTTACCTTTGTAGGTTTTCTCACCA
GTGATTTTGTCACTCTTGTATTTACACCAGGAGCCCTTTGTGCGAgggca
aaaccgatgacgtTTCTCGGGGTCTGGGTCTGCAGTGGAGTGAAATAATA
CCGCGGCGACGGTCTTTTTCATAGCGTACAAACT

Coding sequence (CDS) from alignment at scaffold_292:101305..101888

>TCONS_00057554 ID=TCONS_00057554|Name=TCONS_00057554|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_292:101305..101888 (Clytia hemisphaerica)
TTACCAACATAAATCCTTTTCGGACACCTTGTCCGAATCCNTAATCACTG
CTGAGGCAACTGCTGTTTTAAAGGTTGTGTTGCCAACATAAATCCTTTTC
GGACACCTTGTCCAAATCAAATTGTTCAACGACTCGTTAACGTTCTGAGT
TTGACCGTGCAAACACTTCTTCAAAAGTTCTTCATTTCccaaatctttat
ttgaaaatacatCAGCAATTACATCTGAGACTGTTTTGTCAATATTGAGT
TTACCTTTGTAGGTTTTCTCACCAGTGATTTTGTCACTCTTGTATTTACA
CCAGGAGCCCTTTGTGCGAgggcaaaaccgatgacgtTTCTCGGGGTCTG
GGTCTGCAGTGGAGTGAAATAATACCGCGGCGACGGTCTTTTTCATAGCG
TACAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036291XLOC_036291Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057554-exon-scaffold_292-1491911889:101305..101888TCONS_00057554-exon-scaffold_292-1491911889:101305..101888Clytia hemisphaericaexon
TCONS_00057554-exon-scaffold_292-1510915933:101305..101888TCONS_00057554-exon-scaffold_292-1510915933:101305..101888Clytia hemisphaericaexon
TCONS_00057554-exon-scaffold_292-1575043694:101305..101888TCONS_00057554-exon-scaffold_292-1575043694:101305..101888Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057554-proteinTCONS_00057554-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_292supercontigscaffold_292:101305..101888 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68682	1.84514	1.35301	0.642376	2.16892	3.17218	3.52735	2.04968	0.63779	1.28376	0.670949	1.30342	1.32133	2.28702	0.583257	2.13309	1.56247	1.3103	3.16228	1.86189	1.00619	0.858637	1.82073	1.87955	1.21891	1.54112	2.28986	0.969125	1.05007	1.49779
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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